Wall clock time and date at job start Sat Apr 11 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.87500 * 2 1 4 4 C 1.54323 * 109.88520 * 121.01077 * 2 1 3 5 5 H 1.09002 * 110.72521 * 260.13231 * 4 2 1 6 6 N 1.46500 * 110.71686 * 23.23009 * 4 2 1 7 7 C 1.36947 * 119.99956 * 204.99810 * 6 4 2 8 8 H 1.07996 * 119.99441 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00095 * 179.97438 * 7 6 4 10 10 N 1.31621 * 119.99878 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00002 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46950 * 60.00157 * 11 9 7 13 13 H 1.48499 * 109.46934 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47006 * 300.00217 * 11 9 7 15 15 C 1.55161 * 102.94201 * 141.76343 * 4 2 1 16 16 C 1.54907 * 101.58400 * 324.50532 * 15 4 2 17 17 N 1.47018 * 110.01465 * 238.90194 * 2 1 3 18 18 C 1.34776 * 125.65000 * 61.54064 * 17 2 1 19 19 O 1.21602 * 120.00037 * 358.64821 * 18 17 2 20 20 C 1.47428 * 120.00135 * 178.64173 * 18 17 2 21 21 C 1.41358 * 126.40470 * 8.35551 * 20 18 17 22 22 N 1.30454 * 108.07382 * 179.87877 * 21 20 18 23 23 N 1.39933 * 108.91589 * 0.38482 * 22 21 20 24 24 C 1.39915 * 125.77752 * 179.77554 * 23 22 21 25 25 C 1.39329 * 120.85369 * 179.70067 * 24 23 22 26 26 C 1.38012 * 119.07780 * 179.75046 * 25 24 23 27 27 N 1.31936 * 120.82845 * 0.52882 * 26 25 24 28 28 C 1.31937 * 121.88740 * 359.71934 * 27 26 25 29 29 C 1.37999 * 120.83437 * 0.02562 * 28 27 26 30 30 C 1.34610 * 108.44690 * 359.75194 * 23 22 21 31 31 H 1.08999 * 109.46820 * 299.29812 * 1 2 3 32 32 H 1.08999 * 109.46978 * 59.30063 * 1 2 3 33 33 H 1.08999 * 109.46926 * 179.30176 * 1 2 3 34 34 H 0.96993 * 120.00590 * 24.99201 * 6 4 2 35 35 H 0.97000 * 119.99733 * 179.97438 * 10 9 7 36 36 H 1.09004 * 111.00150 * 82.58012 * 15 4 2 37 37 H 1.08996 * 111.00462 * 206.42596 * 15 4 2 38 38 H 1.08992 * 110.36794 * 155.84844 * 16 15 4 39 39 H 1.09003 * 110.36363 * 278.06208 * 16 15 4 40 40 H 1.08000 * 125.96795 * 0.03806 * 21 20 18 41 41 H 1.07993 * 120.46044 * 359.96810 * 25 24 23 42 42 H 1.07997 * 119.58395 * 180.26686 * 26 25 24 43 43 H 1.08001 * 119.58285 * 180.02562 * 28 27 26 44 44 H 1.07999 * 120.46404 * 179.97438 * 29 28 27 45 45 H 1.08000 * 126.31311 * 180.02562 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2438 5 1 2.3504 -0.0431 2.0212 6 7 1.0471 -1.6826 1.7501 7 6 1.0607 -2.0568 3.0674 8 1 1.8147 -1.6630 3.7328 9 6 0.1055 -2.9423 3.5473 10 7 -0.8131 -3.4226 2.7361 11 14 0.1245 -3.4533 5.3439 12 1 -0.0367 -2.2520 6.2019 13 1 -0.9916 -4.3984 5.6016 14 1 1.4165 -4.1152 5.6566 15 6 3.2901 -1.5100 0.6954 16 6 2.8197 -1.8769 -0.7342 17 7 2.0332 -0.7135 -1.1829 18 6 1.8117 -0.3625 -2.4651 19 8 1.1237 0.6072 -2.7199 20 6 2.4036 -1.1542 -3.5589 21 6 3.0806 -2.3884 -3.4300 22 7 3.4528 -2.7721 -4.6200 23 7 3.0464 -1.8124 -5.5538 24 6 3.2680 -1.8690 -6.9341 25 6 2.8110 -0.8550 -7.7733 26 6 3.0545 -0.9455 -9.1288 27 7 3.7010 -1.9796 -9.6321 28 6 4.1448 -2.9617 -8.8710 29 6 3.9464 -2.9434 -7.5055 30 6 2.4056 -0.8260 -4.8994 31 1 -0.3633 0.5029 0.8962 32 1 -0.3633 0.5247 -0.8836 33 1 -0.3633 -1.0276 -0.0125 34 1 0.3701 -2.0366 1.1525 35 1 -1.4804 -4.0417 3.0714 36 1 4.1665 -0.8627 0.6643 37 1 3.4888 -2.4060 1.2834 38 1 3.6779 -2.0298 -1.3884 39 1 2.1973 -2.7714 -0.7108 40 1 3.2565 -2.9221 -2.5077 41 1 2.2768 -0.0083 -7.3684 42 1 2.7077 -0.1620 -9.7863 43 1 4.6701 -3.7904 -9.3225 44 1 4.3119 -3.7508 -6.8883 45 1 1.9725 0.0590 -5.3419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987267258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:08 Heat of formation + Delta-G solvation = 123.563379 kcal Electronic energy + Delta-G solvation = -28814.954338 eV Core-core repulsion = 24835.692855 eV Total energy + Delta-G solvation = -3979.261483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.13693 -40.43316 -39.63315 -37.35716 -34.89871 -33.97643 -32.00582 -31.80756 -30.92233 -30.79680 -30.16981 -28.71308 -25.51572 -24.98324 -24.27417 -23.55559 -23.15382 -21.55730 -21.29702 -19.84167 -19.21711 -18.30001 -17.50196 -16.84671 -16.41709 -16.23644 -16.02628 -15.84065 -15.54063 -14.85174 -14.65901 -14.47682 -14.25305 -14.17195 -13.87079 -13.76721 -13.38729 -13.16737 -12.73796 -12.63071 -12.29840 -12.19557 -11.77402 -11.41713 -11.32360 -11.21862 -10.98269 -10.93894 -10.73067 -10.64279 -10.26461 -10.12794 -10.08714 -9.77528 -9.68760 -9.66978 -9.59229 -8.97929 -8.86043 -8.31856 -7.05712 -5.84029 -3.13822 0.16799 0.55648 1.57672 1.74267 1.95599 3.17469 3.29643 3.39650 3.44696 3.45567 3.45682 3.88397 3.93345 4.16007 4.41470 4.43515 4.52533 4.61620 4.69994 4.91809 4.98881 5.00671 5.10916 5.23688 5.25125 5.29871 5.44805 5.52388 5.56989 5.62584 5.72708 5.80699 5.95552 5.98638 6.02608 6.12433 6.31386 6.40698 6.49857 6.50850 6.60861 6.70495 6.86034 7.02263 7.10237 7.42943 7.63767 7.80378 8.34018 8.39156 9.45845 10.00773 10.35697 11.37962 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.002191 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.811634 B =12773.646606 C =13256.621353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.128 3.872 3 H 0.071 0.929 4 C 0.172 3.828 5 H 0.071 0.929 6 N -0.713 5.713 7 C -0.245 4.245 8 H 0.071 0.929 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.286 1.286 15 C -0.160 4.160 16 C 0.091 3.909 17 N -0.600 5.600 18 C 0.605 3.395 19 O -0.550 6.550 20 C -0.260 4.260 21 C 0.085 3.915 22 N -0.289 5.289 23 N -0.322 5.322 24 C 0.207 3.793 25 C -0.197 4.197 26 C 0.129 3.871 27 N -0.494 5.494 28 C 0.124 3.876 29 C -0.172 4.172 30 C 0.123 3.877 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.388 0.612 35 H 0.257 0.743 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.214 0.786 41 H 0.145 0.855 42 H 0.167 0.833 43 H 0.166 0.834 44 H 0.151 0.849 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.603 3.918 -20.371 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 H 0.089 0.911 4 C 0.059 3.941 5 H 0.089 0.911 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.218 1.218 14 H -0.213 1.213 15 C -0.202 4.202 16 C -0.031 4.031 17 N -0.332 5.332 18 C 0.394 3.606 19 O -0.430 6.430 20 C -0.274 4.274 21 C -0.104 4.104 22 N -0.105 5.105 23 N -0.096 5.096 24 C 0.106 3.894 25 C -0.219 4.219 26 C -0.029 4.029 27 N -0.204 5.204 28 C -0.032 4.032 29 C -0.194 4.194 30 C -0.022 4.022 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.230 0.770 41 H 0.163 0.837 42 H 0.185 0.815 43 H 0.184 0.816 44 H 0.169 0.831 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 10.953 3.458 -22.006 24.824 hybrid contribution -0.805 0.050 2.320 2.457 sum 10.148 3.508 -19.686 22.424 Atomic orbital electron populations 1.21926 0.94130 1.03003 1.01693 1.22029 0.95510 0.95581 0.84372 0.91062 1.21198 0.89066 0.91695 0.92094 0.91112 1.42549 1.32608 1.51490 1.08849 1.19188 1.10831 1.21429 0.86129 0.91066 1.24747 0.97889 1.00069 0.97886 1.69649 1.18343 1.35463 1.34309 0.86270 0.76955 0.78052 0.84870 1.21248 1.21765 1.21252 1.23543 0.99401 1.02517 0.94691 1.22719 0.94589 0.89261 0.96544 1.48360 1.51633 1.28597 1.04606 1.16681 0.79984 0.83347 0.80636 1.90752 1.40068 1.28781 1.83367 1.20434 1.13284 1.00067 0.93603 1.25204 0.93951 0.94461 0.96766 1.77307 1.23404 1.11922 0.97895 1.45615 1.42447 1.16703 1.04787 1.17837 0.96484 0.95919 0.79200 1.21964 1.04903 0.99995 0.95078 1.22690 0.92901 0.95446 0.91819 1.67724 1.10430 1.01892 1.40309 1.22773 0.94875 0.96314 0.89270 1.21981 1.01363 0.99021 0.97058 1.23002 0.93841 0.93602 0.91771 0.91446 0.92652 0.91564 0.77511 0.93357 0.91895 0.89269 0.90942 0.90589 0.77042 0.83706 0.81547 0.81638 0.83085 0.78988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.50 37.16 0.32 -2.46 16 2 C 0.13 2.18 3.43 -66.95 -0.23 1.95 16 3 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 4 C 0.17 3.10 3.47 -66.09 -0.23 2.87 16 5 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 6 N -0.71 -16.24 4.56 -51.65 -0.24 -16.47 16 7 C -0.24 -6.29 9.96 -15.06 -0.15 -6.44 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -26.85 13.06 55.49 0.72 -26.12 16 11 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 C -0.16 -2.41 6.78 -24.58 -0.17 -2.57 16 16 C 0.09 1.26 5.25 -2.53 -0.01 1.25 16 17 N -0.60 -9.39 3.07 -164.28 -0.50 -9.89 16 18 C 0.60 9.69 7.64 -12.52 -0.10 9.60 16 19 O -0.55 -10.21 15.91 5.28 0.08 -10.13 16 20 C -0.26 -3.48 6.06 -105.05 -0.64 -4.11 16 21 C 0.08 1.03 10.29 -16.95 -0.17 0.86 16 22 N -0.29 -3.59 11.87 30.88 0.37 -3.22 16 23 N -0.32 -3.65 3.76 -10.03 -0.04 -3.69 16 24 C 0.21 1.98 6.73 -83.36 -0.56 1.42 16 25 C -0.20 -1.45 9.52 -39.26 -0.37 -1.83 16 26 C 0.13 0.89 11.18 -17.59 -0.20 0.70 16 27 N -0.49 -4.21 10.36 -13.32 -0.14 -4.35 16 28 C 0.12 0.93 11.17 -17.59 -0.20 0.73 16 29 C -0.17 -1.47 9.73 -39.27 -0.38 -1.86 16 30 C 0.12 1.41 10.65 -16.42 -0.17 1.23 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 1.03 6.85 -51.93 -0.36 0.67 16 33 H 0.07 1.37 6.22 -51.93 -0.32 1.05 16 34 H 0.39 9.58 5.68 -40.82 -0.23 9.35 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.07 0.80 5.27 -51.93 -0.27 0.53 16 39 H 0.08 1.13 8.02 -51.93 -0.42 0.72 16 40 H 0.21 2.20 4.80 -52.49 -0.25 1.94 16 41 H 0.15 0.77 6.85 -52.49 -0.36 0.41 16 42 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 43 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.15 1.24 7.78 -52.49 -0.41 0.83 16 45 H 0.19 1.69 7.09 -52.49 -0.37 1.32 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -32.49 370.78 -8.03 -40.52 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.50 Total: 10.35 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -3.36 Total: 0.98 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: 0.18 Total: -63.75 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.49 -8.03 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987267258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.085 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds