Wall clock time and date at job start Sat Apr 11 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.87500 * 2 1 4 4 C 1.54323 * 109.88520 * 121.01077 * 2 1 3 5 5 H 1.09002 * 110.72521 * 260.13231 * 4 2 1 6 6 N 1.46500 * 110.71686 * 23.23009 * 4 2 1 7 7 C 1.36947 * 119.99956 * 204.99810 * 6 4 2 8 8 H 1.07996 * 119.99441 * 359.97438 * 7 6 4 9 9 C 1.38809 * 120.00095 * 179.97438 * 7 6 4 10 10 N 1.31621 * 119.99878 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00002 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46950 * 60.00157 * 11 9 7 13 13 H 1.48499 * 109.46934 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47006 * 300.00217 * 11 9 7 15 15 C 1.55161 * 102.94201 * 141.76343 * 4 2 1 16 16 C 1.54907 * 101.58400 * 324.50532 * 15 4 2 17 17 N 1.47018 * 110.01465 * 238.90194 * 2 1 3 18 18 C 1.34776 * 125.65000 * 61.54064 * 17 2 1 19 19 O 1.21602 * 120.00037 * 358.64821 * 18 17 2 20 20 C 1.47428 * 120.00135 * 178.64173 * 18 17 2 21 21 C 1.41358 * 126.40470 * 8.35551 * 20 18 17 22 22 N 1.30454 * 108.07382 * 179.87877 * 21 20 18 23 23 N 1.39933 * 108.91589 * 0.38482 * 22 21 20 24 24 C 1.39915 * 125.77752 * 179.77554 * 23 22 21 25 25 C 1.39329 * 120.85369 * 179.70067 * 24 23 22 26 26 C 1.38012 * 119.07780 * 179.75046 * 25 24 23 27 27 N 1.31936 * 120.82845 * 0.52882 * 26 25 24 28 28 C 1.31937 * 121.88740 * 359.71934 * 27 26 25 29 29 C 1.37999 * 120.83437 * 0.02562 * 28 27 26 30 30 C 1.34610 * 108.44690 * 359.75194 * 23 22 21 31 31 H 1.08999 * 109.46820 * 299.29812 * 1 2 3 32 32 H 1.08999 * 109.46978 * 59.30063 * 1 2 3 33 33 H 1.08999 * 109.46926 * 179.30176 * 1 2 3 34 34 H 0.96993 * 120.00590 * 24.99201 * 6 4 2 35 35 H 0.97000 * 119.99733 * 179.97438 * 10 9 7 36 36 H 1.09004 * 111.00150 * 82.58012 * 15 4 2 37 37 H 1.08996 * 111.00462 * 206.42596 * 15 4 2 38 38 H 1.08992 * 110.36794 * 155.84844 * 16 15 4 39 39 H 1.09003 * 110.36363 * 278.06208 * 16 15 4 40 40 H 1.08000 * 125.96795 * 0.03806 * 21 20 18 41 41 H 1.07993 * 120.46044 * 359.96810 * 25 24 23 42 42 H 1.07997 * 119.58395 * 180.26686 * 26 25 24 43 43 H 1.08001 * 119.58285 * 180.02562 * 28 27 26 44 44 H 1.07999 * 120.46404 * 179.97438 * 29 28 27 45 45 H 1.08000 * 126.31311 * 180.02562 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2438 5 1 2.3504 -0.0431 2.0212 6 7 1.0471 -1.6826 1.7501 7 6 1.0607 -2.0568 3.0674 8 1 1.8147 -1.6630 3.7328 9 6 0.1055 -2.9423 3.5473 10 7 -0.8131 -3.4226 2.7361 11 14 0.1245 -3.4533 5.3439 12 1 -0.0367 -2.2520 6.2019 13 1 -0.9916 -4.3984 5.6016 14 1 1.4165 -4.1152 5.6566 15 6 3.2901 -1.5100 0.6954 16 6 2.8197 -1.8769 -0.7342 17 7 2.0332 -0.7135 -1.1829 18 6 1.8117 -0.3625 -2.4651 19 8 1.1237 0.6072 -2.7199 20 6 2.4036 -1.1542 -3.5589 21 6 3.0806 -2.3884 -3.4300 22 7 3.4528 -2.7721 -4.6200 23 7 3.0464 -1.8124 -5.5538 24 6 3.2680 -1.8690 -6.9341 25 6 2.8110 -0.8550 -7.7733 26 6 3.0545 -0.9455 -9.1288 27 7 3.7010 -1.9796 -9.6321 28 6 4.1448 -2.9617 -8.8710 29 6 3.9464 -2.9434 -7.5055 30 6 2.4056 -0.8260 -4.8994 31 1 -0.3633 0.5029 0.8962 32 1 -0.3633 0.5247 -0.8836 33 1 -0.3633 -1.0276 -0.0125 34 1 0.3701 -2.0366 1.1525 35 1 -1.4804 -4.0417 3.0714 36 1 4.1665 -0.8627 0.6643 37 1 3.4888 -2.4060 1.2834 38 1 3.6779 -2.0298 -1.3884 39 1 2.1973 -2.7714 -0.7108 40 1 3.2565 -2.9221 -2.5077 41 1 2.2768 -0.0083 -7.3684 42 1 2.7077 -0.1620 -9.7863 43 1 4.6701 -3.7904 -9.3225 44 1 4.3119 -3.7508 -6.8883 45 1 1.9725 0.0590 -5.3419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987267258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:07 Heat of formation + Delta-G solvation = 103.172517 kcal Electronic energy + Delta-G solvation = -28815.838552 eV Core-core repulsion = 24835.692855 eV Total energy + Delta-G solvation = -3980.145697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.01133 -41.26566 -40.71085 -38.71473 -35.89768 -35.45841 -33.40908 -32.61288 -32.29667 -31.62122 -31.28493 -30.18444 -26.90484 -26.03023 -25.31726 -24.94483 -24.18102 -22.48409 -22.26905 -21.01514 -20.36237 -19.42323 -19.23330 -17.79583 -17.54259 -17.08288 -16.83817 -16.73948 -16.49512 -16.26097 -15.98453 -15.60758 -15.41158 -15.20625 -14.81266 -14.78155 -14.67086 -14.30192 -14.15806 -14.00547 -13.62720 -13.21078 -12.96440 -12.90736 -12.80339 -12.51014 -12.35672 -12.22606 -12.16254 -12.08131 -12.06668 -11.59649 -11.40645 -10.93773 -10.86957 -10.69137 -10.56290 -10.32126 -9.79192 -9.53347 -8.95776 -7.88801 -5.16491 -0.56539 0.00623 0.68474 0.93716 1.04426 1.52193 1.53703 1.59451 1.98417 2.29225 2.60522 2.72266 3.08710 3.41180 3.43447 3.47755 3.60862 3.69352 3.79113 3.80768 3.92755 3.99931 4.03299 4.14110 4.22467 4.32210 4.38507 4.40971 4.45705 4.58861 4.63235 4.74635 4.75964 4.85347 4.86796 4.96955 5.11072 5.17238 5.24574 5.39158 5.41343 5.42486 5.50809 5.60753 5.74985 6.21178 6.32536 6.57608 6.86855 7.15125 7.40176 8.14587 8.37818 9.34181 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.002191 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.811634 B =12773.646606 C =13256.621353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.134 3.866 3 H 0.084 0.916 4 C 0.163 3.837 5 H 0.076 0.924 6 N -0.723 5.723 7 C -0.232 4.232 8 H 0.081 0.919 9 C -0.074 4.074 10 N -0.969 5.969 11 Si 0.968 3.032 12 H -0.281 1.281 13 H -0.303 1.303 14 H -0.277 1.277 15 C -0.147 4.147 16 C 0.095 3.905 17 N -0.601 5.601 18 C 0.605 3.395 19 O -0.582 6.582 20 C -0.286 4.286 21 C 0.087 3.913 22 N -0.304 5.304 23 N -0.319 5.319 24 C 0.177 3.823 25 C -0.191 4.191 26 C 0.128 3.872 27 N -0.512 5.512 28 C 0.124 3.876 29 C -0.179 4.179 30 C 0.137 3.863 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.376 0.624 35 H 0.248 0.752 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.225 0.775 41 H 0.166 0.834 42 H 0.197 0.803 43 H 0.191 0.809 44 H 0.149 0.851 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.522 4.661 -21.740 25.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.030 3.970 3 H 0.102 0.898 4 C 0.053 3.947 5 H 0.094 0.906 6 N -0.365 5.365 7 C -0.364 4.364 8 H 0.099 0.901 9 C -0.267 4.267 10 N -0.620 5.620 11 Si 0.798 3.202 12 H -0.207 1.207 13 H -0.230 1.230 14 H -0.203 1.203 15 C -0.188 4.188 16 C -0.027 4.027 17 N -0.333 5.333 18 C 0.395 3.605 19 O -0.464 6.464 20 C -0.300 4.300 21 C -0.102 4.102 22 N -0.121 5.121 23 N -0.091 5.091 24 C 0.077 3.923 25 C -0.213 4.213 26 C -0.029 4.029 27 N -0.221 5.221 28 C -0.032 4.032 29 C -0.200 4.200 30 C -0.011 4.011 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.211 0.789 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.241 0.759 41 H 0.184 0.816 42 H 0.214 0.786 43 H 0.207 0.793 44 H 0.167 0.833 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 12.949 4.211 -23.396 27.070 hybrid contribution -1.347 -0.098 2.561 2.896 sum 11.602 4.113 -20.835 24.199 Atomic orbital electron populations 1.21767 0.95697 1.00996 1.01055 1.21868 0.94134 0.96271 0.84724 0.89780 1.21424 0.89242 0.91384 0.92671 0.90632 1.42671 1.33616 1.52262 1.07908 1.19591 1.09759 1.19676 0.87375 0.90089 1.25469 0.98404 1.01363 1.01415 1.69813 1.19499 1.36875 1.35828 0.85288 0.76643 0.77427 0.80826 1.20740 1.23017 1.20301 1.23394 0.98735 1.02018 0.94656 1.22771 0.95249 0.88049 0.96629 1.48361 1.51724 1.28844 1.04330 1.17009 0.79406 0.83071 0.80985 1.90726 1.41542 1.30282 1.83813 1.20241 1.15279 1.00830 0.93613 1.25330 0.93564 0.94057 0.97215 1.77271 1.24021 1.12700 0.98121 1.45731 1.41792 1.16203 1.05386 1.18223 0.98148 0.97370 0.78577 1.22248 1.04168 0.99880 0.95024 1.23223 0.91962 0.95599 0.92087 1.67791 1.10911 1.02557 1.40887 1.23155 0.94491 0.96763 0.88804 1.22081 1.01457 0.98891 0.97602 1.23365 0.92514 0.93909 0.91263 0.92282 0.92950 0.94145 0.78898 0.94331 0.88901 0.90328 0.87536 0.91955 0.75929 0.81602 0.78591 0.79250 0.83278 0.76628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 8.50 71.98 0.61 -4.59 16 2 C 0.13 4.46 3.43 45.34 0.16 4.62 16 3 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 4 C 0.16 5.72 3.47 46.18 0.16 5.88 16 5 H 0.08 2.59 8.09 -2.39 -0.02 2.57 16 6 N -0.72 -33.18 4.56 -317.32 -1.45 -34.63 16 7 C -0.23 -11.90 9.96 84.03 0.84 -11.06 16 8 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 9 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 10 N -0.97 -57.53 13.06 21.65 0.28 -57.25 16 11 Si 0.97 44.56 29.55 68.60 2.03 46.59 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 15 C -0.15 -4.13 6.78 31.99 0.22 -3.92 16 16 C 0.09 2.49 5.25 86.85 0.46 2.94 16 17 N -0.60 -18.26 3.07 -791.90 -2.43 -20.69 16 18 C 0.60 18.90 7.64 86.66 0.66 19.56 16 19 O -0.58 -21.32 15.91 -4.04 -0.06 -21.39 16 20 C -0.29 -7.29 6.06 -20.14 -0.12 -7.41 16 21 C 0.09 1.99 10.29 85.67 0.88 2.88 16 22 N -0.30 -7.20 11.87 -56.23 -0.67 -7.87 16 23 N -0.32 -6.73 3.76 -185.65 -0.70 -7.43 16 24 C 0.18 3.09 6.73 38.37 0.26 3.35 16 25 C -0.19 -2.36 9.52 22.48 0.21 -2.14 16 26 C 0.13 1.44 11.18 84.62 0.95 2.38 16 27 N -0.51 -7.62 10.36 -196.07 -2.03 -9.65 16 28 C 0.12 1.63 11.17 84.62 0.95 2.57 16 29 C -0.18 -2.82 9.73 22.47 0.22 -2.60 16 30 C 0.14 2.88 10.65 84.21 0.90 3.78 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 32 H 0.05 1.99 6.85 -2.39 -0.02 1.97 16 33 H 0.04 1.73 6.22 -2.39 -0.01 1.72 16 34 H 0.38 19.11 5.68 -92.71 -0.53 18.59 16 35 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.11 2.10 5.27 -2.39 -0.01 2.09 16 39 H 0.06 1.83 8.02 -2.39 -0.02 1.81 16 40 H 0.22 4.29 4.80 -2.91 -0.01 4.28 16 41 H 0.17 1.24 6.85 -2.91 -0.02 1.22 16 42 H 0.20 0.88 8.06 -2.91 -0.02 0.85 16 43 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.15 2.34 7.78 -2.91 -0.02 2.32 16 45 H 0.22 3.28 7.09 -2.91 -0.02 3.26 16 Total: -1.00 -70.98 370.78 3.29 -67.69 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.52 Total: 31.98 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 7.80 Total: 12.64 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -6.99 Total: -137.51 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.06 Total: -21.39 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -70.98 3.29 -67.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987267258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.862 kcal (2) G-P(sol) polarization free energy of solvation -70.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds