Wall clock time and date at job start Sat Apr 11 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.99944 * 2 1 4 4 C 1.54328 * 109.99066 * 238.95880 * 2 1 3 5 5 H 1.09007 * 110.84991 * 100.20037 * 4 2 1 6 6 N 1.46498 * 110.67231 * 337.05123 * 4 2 1 7 7 C 1.36945 * 120.00094 * 95.94004 * 6 4 2 8 8 H 1.07996 * 119.99760 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99799 * 180.02562 * 7 6 4 10 10 N 1.31611 * 120.00014 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99864 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47098 * 60.00168 * 11 9 7 13 13 H 1.48495 * 109.47375 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47320 * 300.00304 * 11 9 7 15 15 C 1.55156 * 103.02366 * 218.66756 * 4 2 1 16 16 C 1.54911 * 101.58026 * 35.30605 * 15 4 2 17 17 N 1.47023 * 109.88180 * 121.09501 * 2 1 3 18 18 C 1.34783 * 125.64878 * 298.39571 * 17 2 1 19 19 O 1.21565 * 119.99778 * 186.05848 * 18 17 2 20 20 C 1.47712 * 119.99574 * 6.05978 * 18 17 2 21 21 C 1.39712 * 120.02062 * 163.19800 * 20 18 17 22 22 C 1.37664 * 119.97583 * 180.02562 * 21 20 18 23 23 C 1.39504 * 120.02383 * 359.97438 * 22 21 20 24 24 C 1.48293 * 119.97595 * 180.02562 * 23 22 21 25 25 N 1.34020 * 125.65318 * 359.97438 * 24 23 22 26 26 C 1.30637 * 109.78395 * 180.02562 * 25 24 23 27 27 N 1.34573 * 108.30647 * 0.02562 * 26 25 24 28 28 H 0.97002 * 126.73792 * 180.25963 * 27 26 25 29 29 N 1.31543 * 125.65518 * 180.02562 * 24 23 22 30 30 C 1.39498 * 120.05111 * 0.27251 * 23 22 21 31 31 C 1.37669 * 120.02283 * 359.45468 * 30 23 22 32 32 H 1.09000 * 109.47024 * 283.46744 * 1 2 3 33 33 H 1.09005 * 109.47201 * 43.46579 * 1 2 3 34 34 H 1.08999 * 109.47470 * 163.47070 * 1 2 3 35 35 H 0.97004 * 119.99943 * 275.94947 * 6 4 2 36 36 H 0.97006 * 119.99815 * 179.97438 * 10 9 7 37 37 H 1.09001 * 111.00189 * 277.23268 * 15 4 2 38 38 H 1.09000 * 111.00590 * 153.38267 * 15 4 2 39 39 H 1.08995 * 110.36315 * 204.15144 * 16 15 4 40 40 H 1.09001 * 110.36427 * 81.83205 * 16 15 4 41 41 H 1.08001 * 120.01809 * 0.03766 * 21 20 18 42 42 H 1.08002 * 119.98993 * 180.02562 * 22 21 20 43 43 H 1.08005 * 125.84699 * 180.02562 * 26 25 24 44 44 H 1.07994 * 119.99182 * 179.73126 * 30 23 22 45 45 H 1.07998 * 120.01781 * 180.25417 * 31 30 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2426 5 1 2.3598 -0.0450 -2.0192 6 7 1.0483 -1.6789 -1.7531 7 6 0.2211 -1.2986 -2.7761 8 1 0.3130 -0.3124 -3.2067 9 6 -0.7357 -2.1806 -3.2595 10 7 -0.8480 -3.3822 -2.7343 11 14 -1.8636 -1.6621 -4.6553 12 1 -1.0493 -1.3257 -5.8507 13 1 -2.7890 -2.7760 -4.9837 14 1 -2.6494 -0.4722 -4.2408 15 6 3.2863 -1.5185 -0.6914 16 6 2.8099 -1.8825 0.7370 17 7 2.0300 -0.7141 1.1839 18 6 1.8073 -0.3620 2.4658 19 8 2.3611 -0.9627 3.3660 20 6 0.8905 0.7536 2.7766 21 6 0.3828 0.9016 4.0698 22 6 -0.4720 1.9414 4.3583 23 6 -0.8309 2.8475 3.3601 24 6 -1.7514 3.9675 3.6722 25 7 -2.3031 4.2151 4.8683 26 6 -3.0615 5.2761 4.7942 27 7 -3.0153 5.7415 3.5324 28 1 -3.4769 6.5203 3.1839 29 7 -2.1625 4.8821 2.8209 30 6 -0.3287 2.6977 2.0673 31 6 0.5307 1.6619 1.7779 32 1 -0.3633 0.2393 0.9994 33 1 -0.3634 0.7459 -0.7070 34 1 -0.3634 -0.9852 -0.2924 35 1 0.9658 -2.5647 -1.3665 36 1 -1.5169 -3.9984 -3.0718 37 1 4.1669 -0.8770 -0.6579 38 1 3.4806 -2.4157 -1.2791 39 1 3.6655 -2.0412 1.3932 40 1 2.1801 -2.7718 0.7116 41 1 0.6610 0.2007 4.8429 42 1 -0.8642 2.0563 5.3580 43 1 -3.6286 5.7062 5.6066 44 1 -0.6107 3.3971 1.2943 45 1 0.9227 1.5485 0.7779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987309573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:10 Heat of formation + Delta-G solvation = 140.311060 kcal Electronic energy + Delta-G solvation = -29445.661731 eV Core-core repulsion = 25467.126482 eV Total energy + Delta-G solvation = -3978.535249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.34069 -40.65079 -38.49418 -37.43856 -34.09466 -33.59798 -32.37133 -32.02186 -31.36363 -30.37630 -29.59209 -28.78170 -25.63397 -24.65141 -23.47672 -23.32804 -22.53617 -21.74921 -20.66522 -19.97701 -19.17613 -18.74244 -17.55969 -16.84910 -16.32975 -16.03117 -15.76173 -15.40412 -15.04364 -14.70996 -14.47228 -14.20617 -13.97233 -13.78098 -13.47429 -13.19085 -13.01152 -12.85174 -12.51949 -12.47346 -12.19446 -12.05422 -11.46769 -11.28963 -11.03733 -10.98355 -10.84363 -10.72277 -10.52689 -10.49949 -10.37346 -10.31005 -10.17346 -10.12148 -9.77345 -9.62517 -8.97905 -8.81571 -8.48472 -8.21579 -7.08195 -5.86682 -3.17412 0.49330 1.44154 1.45439 2.30129 2.54735 3.18120 3.33205 3.38256 3.43423 3.44592 3.68238 3.99816 4.29167 4.50002 4.58325 4.67746 4.91126 4.98639 5.13211 5.20399 5.33018 5.40264 5.48445 5.53692 5.60149 5.66152 5.74067 5.83268 5.86023 5.89387 6.04571 6.06810 6.17591 6.29054 6.35378 6.36258 6.37462 6.40683 6.52872 6.58349 6.67942 6.69436 6.76029 6.85736 7.34825 7.60899 7.70819 7.88208 8.30013 8.43342 9.42455 9.95391 10.30540 11.34820 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.003329 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.049444 B = 8408.095032 C =10505.115559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.089 3.911 3 H 0.072 0.928 4 C 0.171 3.829 5 H 0.077 0.923 6 N -0.707 5.707 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.006 4.006 10 N -0.928 5.928 11 Si 0.905 3.095 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.285 1.285 15 C -0.146 4.146 16 C 0.110 3.890 17 N -0.597 5.597 18 C 0.571 3.429 19 O -0.551 6.551 20 C -0.118 4.118 21 C -0.065 4.065 22 C -0.094 4.094 23 C 0.002 3.998 24 C 0.271 3.729 25 N -0.533 5.533 26 C 0.263 3.737 27 N -0.485 5.485 28 H 0.443 0.557 29 N -0.300 5.300 30 C -0.104 4.104 31 C -0.097 4.097 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.225 0.775 44 H 0.135 0.865 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 16.849 12.739 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 H 0.089 0.911 4 C 0.058 3.942 5 H 0.095 0.905 6 N -0.346 5.346 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.203 4.203 10 N -0.575 5.575 11 Si 0.736 3.264 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.185 4.185 16 C -0.012 4.012 17 N -0.329 5.329 18 C 0.360 3.640 19 O -0.431 6.431 20 C -0.122 4.122 21 C -0.084 4.084 22 C -0.115 4.115 23 C -0.001 4.001 24 C -0.008 4.008 25 N -0.261 5.261 26 C -0.036 4.036 27 N -0.204 5.204 28 H 0.289 0.711 29 N -0.129 5.129 30 C -0.124 4.124 31 C -0.114 4.114 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.221 0.779 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.241 0.759 44 H 0.152 0.848 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.059 16.399 12.669 20.723 hybrid contribution -1.481 0.756 -0.650 1.786 sum -1.541 17.156 12.019 21.004 Atomic orbital electron populations 1.22662 0.93493 1.06268 1.00295 1.23098 0.96234 0.95266 0.87142 0.91073 1.21242 0.88602 0.92358 0.91992 0.90520 1.42394 1.37619 1.14348 1.40197 1.19139 1.10511 0.98644 1.09324 0.91011 1.24735 0.99691 0.96095 0.99805 1.69643 1.37200 1.06452 1.44202 0.86308 0.80584 0.77301 0.82203 1.21217 1.21750 1.21188 1.23175 0.98374 1.01860 0.95091 1.22195 0.95175 0.88507 0.95290 1.48439 1.51456 1.28184 1.04798 1.17873 0.81322 0.83335 0.81446 1.90735 1.51074 1.55861 1.45410 1.20047 1.00297 0.96990 0.94895 1.21147 0.94743 0.96991 0.95497 1.21051 0.97479 0.93544 0.99385 1.17635 0.95889 0.92059 0.94530 1.22400 0.96690 0.94857 0.86850 1.70526 1.14247 1.16683 1.24637 1.26113 0.96906 0.91835 0.88771 1.48156 1.37825 1.25641 1.08754 0.71128 1.78294 1.10724 1.05163 1.18724 1.21107 0.97539 0.98454 0.95313 1.22715 0.95469 0.92017 1.01220 0.92803 0.91923 0.88397 0.77903 0.93291 0.91008 0.89386 0.91014 0.91174 0.84408 0.84369 0.75905 0.84760 0.81313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 6.98 37.16 0.26 -2.76 16 2 C 0.09 1.43 2.71 -66.95 -0.18 1.24 16 3 H 0.07 1.00 6.17 -51.93 -0.32 0.68 16 4 C 0.17 2.96 3.53 -66.09 -0.23 2.73 16 5 H 0.08 1.29 8.06 -51.92 -0.42 0.87 16 6 N -0.71 -15.56 3.55 -51.65 -0.18 -15.74 16 7 C -0.25 -6.08 8.77 -15.05 -0.13 -6.22 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 10 N -0.93 -26.40 13.06 55.49 0.72 -25.68 16 11 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 C -0.15 -2.17 6.69 -24.58 -0.16 -2.34 16 16 C 0.11 1.78 6.88 -2.53 -0.02 1.76 16 17 N -0.60 -10.02 3.06 -164.17 -0.50 -10.52 16 18 C 0.57 10.13 7.61 -12.39 -0.09 10.03 16 19 O -0.55 -11.11 16.69 5.31 0.09 -11.02 16 20 C -0.12 -1.85 5.07 -104.93 -0.53 -2.38 16 21 C -0.06 -0.92 9.57 -39.24 -0.38 -1.30 16 22 C -0.09 -1.24 9.67 -39.32 -0.38 -1.62 16 23 C 0.00 0.02 5.88 -104.82 -0.62 -0.59 16 24 C 0.27 3.54 7.77 -156.60 -1.22 2.33 16 25 N -0.53 -6.09 10.81 -12.39 -0.13 -6.22 16 26 C 0.26 1.82 13.11 -90.69 -1.19 0.63 16 27 N -0.49 -3.57 7.44 29.52 0.22 -3.35 16 28 H 0.44 1.47 8.96 -182.34 -1.63 -0.17 16 29 N -0.30 -3.63 12.41 32.09 0.40 -3.23 16 30 C -0.10 -1.40 9.66 -39.32 -0.38 -1.78 16 31 C -0.10 -1.37 6.20 -39.24 -0.24 -1.61 16 32 H 0.05 0.92 4.25 -51.93 -0.22 0.70 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.10 2.15 6.19 -51.93 -0.32 1.83 16 35 H 0.39 9.36 7.85 -40.82 -0.32 9.04 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.07 1.11 7.98 -51.93 -0.41 0.70 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.14 1.88 7.73 -52.49 -0.41 1.48 16 42 H 0.14 1.62 7.82 -52.49 -0.41 1.21 16 43 H 0.22 0.30 8.06 -52.48 -0.42 -0.13 16 44 H 0.13 1.67 7.82 -52.49 -0.41 1.26 16 45 H 0.17 2.32 2.60 -52.49 -0.14 2.19 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -33.34 365.69 -11.17 -44.51 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.67 Total: 11.67 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -5.59 Total: -2.14 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: 0.52 Total: -64.75 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.34 -11.17 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987309573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.820 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds