Wall clock time and date at job start Sat Apr 11 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.99944 * 2 1 4 4 C 1.54328 * 109.99066 * 238.95880 * 2 1 3 5 5 H 1.09007 * 110.84991 * 100.20037 * 4 2 1 6 6 N 1.46498 * 110.67231 * 337.05123 * 4 2 1 7 7 C 1.36945 * 120.00094 * 95.94004 * 6 4 2 8 8 H 1.07996 * 119.99760 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99799 * 180.02562 * 7 6 4 10 10 N 1.31611 * 120.00014 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99864 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47098 * 60.00168 * 11 9 7 13 13 H 1.48495 * 109.47375 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47320 * 300.00304 * 11 9 7 15 15 C 1.55156 * 103.02366 * 218.66756 * 4 2 1 16 16 C 1.54911 * 101.58026 * 35.30605 * 15 4 2 17 17 N 1.47023 * 109.88180 * 121.09501 * 2 1 3 18 18 C 1.34783 * 125.64878 * 298.39571 * 17 2 1 19 19 O 1.21565 * 119.99778 * 186.05848 * 18 17 2 20 20 C 1.47712 * 119.99574 * 6.05978 * 18 17 2 21 21 C 1.39712 * 120.02062 * 163.19800 * 20 18 17 22 22 C 1.37664 * 119.97583 * 180.02562 * 21 20 18 23 23 C 1.39504 * 120.02383 * 359.97438 * 22 21 20 24 24 C 1.48293 * 119.97595 * 180.02562 * 23 22 21 25 25 N 1.34020 * 125.65318 * 359.97438 * 24 23 22 26 26 C 1.30637 * 109.78395 * 180.02562 * 25 24 23 27 27 N 1.34573 * 108.30647 * 0.02562 * 26 25 24 28 28 H 0.97002 * 126.73792 * 180.25963 * 27 26 25 29 29 N 1.31543 * 125.65518 * 180.02562 * 24 23 22 30 30 C 1.39498 * 120.05111 * 0.27251 * 23 22 21 31 31 C 1.37669 * 120.02283 * 359.45468 * 30 23 22 32 32 H 1.09000 * 109.47024 * 283.46744 * 1 2 3 33 33 H 1.09005 * 109.47201 * 43.46579 * 1 2 3 34 34 H 1.08999 * 109.47470 * 163.47070 * 1 2 3 35 35 H 0.97004 * 119.99943 * 275.94947 * 6 4 2 36 36 H 0.97006 * 119.99815 * 179.97438 * 10 9 7 37 37 H 1.09001 * 111.00189 * 277.23268 * 15 4 2 38 38 H 1.09000 * 111.00590 * 153.38267 * 15 4 2 39 39 H 1.08995 * 110.36315 * 204.15144 * 16 15 4 40 40 H 1.09001 * 110.36427 * 81.83205 * 16 15 4 41 41 H 1.08001 * 120.01809 * 0.03766 * 21 20 18 42 42 H 1.08002 * 119.98993 * 180.02562 * 22 21 20 43 43 H 1.08005 * 125.84699 * 180.02562 * 26 25 24 44 44 H 1.07994 * 119.99182 * 179.73126 * 30 23 22 45 45 H 1.07998 * 120.01781 * 180.25417 * 31 30 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2426 5 1 2.3598 -0.0450 -2.0192 6 7 1.0483 -1.6789 -1.7531 7 6 0.2211 -1.2986 -2.7761 8 1 0.3130 -0.3124 -3.2067 9 6 -0.7357 -2.1806 -3.2595 10 7 -0.8480 -3.3822 -2.7343 11 14 -1.8636 -1.6621 -4.6553 12 1 -1.0493 -1.3257 -5.8507 13 1 -2.7890 -2.7760 -4.9837 14 1 -2.6494 -0.4722 -4.2408 15 6 3.2863 -1.5185 -0.6914 16 6 2.8099 -1.8825 0.7370 17 7 2.0300 -0.7141 1.1839 18 6 1.8073 -0.3620 2.4658 19 8 2.3611 -0.9627 3.3660 20 6 0.8905 0.7536 2.7766 21 6 0.3828 0.9016 4.0698 22 6 -0.4720 1.9414 4.3583 23 6 -0.8309 2.8475 3.3601 24 6 -1.7514 3.9675 3.6722 25 7 -2.3031 4.2151 4.8683 26 6 -3.0615 5.2761 4.7942 27 7 -3.0153 5.7415 3.5324 28 1 -3.4769 6.5203 3.1839 29 7 -2.1625 4.8821 2.8209 30 6 -0.3287 2.6977 2.0673 31 6 0.5307 1.6619 1.7779 32 1 -0.3633 0.2393 0.9994 33 1 -0.3634 0.7459 -0.7070 34 1 -0.3634 -0.9852 -0.2924 35 1 0.9658 -2.5647 -1.3665 36 1 -1.5169 -3.9984 -3.0718 37 1 4.1669 -0.8770 -0.6579 38 1 3.4806 -2.4157 -1.2791 39 1 3.6655 -2.0412 1.3932 40 1 2.1801 -2.7718 0.7116 41 1 0.6610 0.2007 4.8429 42 1 -0.8642 2.0563 5.3580 43 1 -3.6286 5.7062 5.6066 44 1 -0.6107 3.3971 1.2943 45 1 0.9227 1.5485 0.7779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987309573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:09 Heat of formation + Delta-G solvation = 119.956021 kcal Electronic energy + Delta-G solvation = -29446.544392 eV Core-core repulsion = 25467.126482 eV Total energy + Delta-G solvation = -3979.417910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.06614 -41.94198 -39.67623 -38.85890 -35.77404 -34.64325 -33.42662 -33.01623 -32.91677 -31.42921 -30.72323 -30.36901 -27.08239 -25.80187 -25.28919 -24.18578 -23.66909 -22.74407 -21.66436 -21.33953 -20.45806 -19.42566 -19.28776 -18.24049 -17.49803 -17.24536 -16.61642 -16.51093 -16.40392 -16.05500 -15.71321 -15.50830 -15.23220 -15.12995 -14.90903 -14.58569 -14.40684 -14.05479 -13.85948 -13.46487 -13.31719 -13.16772 -13.03375 -12.89290 -12.63443 -12.35860 -12.25752 -12.22106 -12.00420 -11.81674 -11.71356 -11.47640 -11.33813 -11.15742 -11.09811 -11.02671 -10.80508 -9.91182 -9.70576 -9.45910 -8.93352 -7.87267 -5.14951 -0.56841 0.37622 0.71601 1.52712 1.53365 1.56004 1.58853 1.73846 1.94110 2.14439 2.61092 2.88144 2.95778 3.39028 3.43234 3.53062 3.76166 3.87688 3.91114 3.92892 4.01844 4.14981 4.23519 4.31108 4.35849 4.43157 4.53029 4.60401 4.70099 4.79901 4.87859 4.97335 4.98575 5.03702 5.11009 5.13185 5.23638 5.25506 5.30822 5.37307 5.38679 5.47519 5.62260 5.76081 5.79220 6.22976 6.32848 6.52481 6.99704 7.06176 7.41166 8.13726 8.36812 9.35613 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010295 B = 0.003329 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.049444 B = 8408.095032 C =10505.115559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 H 0.106 0.894 4 C 0.162 3.838 5 H 0.093 0.907 6 N -0.716 5.716 7 C -0.223 4.223 8 H 0.084 0.916 9 C -0.072 4.072 10 N -0.969 5.969 11 Si 0.961 3.039 12 H -0.278 1.278 13 H -0.306 1.306 14 H -0.280 1.280 15 C -0.129 4.129 16 C 0.108 3.892 17 N -0.597 5.597 18 C 0.567 3.433 19 O -0.583 6.583 20 C -0.139 4.139 21 C -0.068 4.068 22 C -0.090 4.090 23 C 0.001 3.999 24 C 0.250 3.750 25 N -0.568 5.568 26 C 0.282 3.718 27 N -0.472 5.472 28 H 0.461 0.539 29 N -0.327 5.327 30 C -0.105 4.105 31 C -0.093 4.093 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.372 0.628 36 H 0.247 0.753 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.138 0.862 42 H 0.151 0.849 43 H 0.279 0.721 44 H 0.145 0.855 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 20.208 13.184 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.008 4.008 3 H 0.123 0.877 4 C 0.051 3.949 5 H 0.111 0.889 6 N -0.353 5.353 7 C -0.354 4.354 8 H 0.102 0.898 9 C -0.264 4.264 10 N -0.620 5.620 11 Si 0.791 3.209 12 H -0.204 1.204 13 H -0.233 1.233 14 H -0.206 1.206 15 C -0.168 4.168 16 C -0.014 4.014 17 N -0.329 5.329 18 C 0.358 3.642 19 O -0.465 6.465 20 C -0.143 4.143 21 C -0.087 4.087 22 C -0.110 4.110 23 C -0.001 4.001 24 C -0.030 4.030 25 N -0.297 5.297 26 C -0.016 4.016 27 N -0.192 5.192 28 H 0.310 0.690 29 N -0.158 5.158 30 C -0.125 4.125 31 C -0.110 4.110 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.204 0.796 36 H 0.055 0.945 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.156 0.844 42 H 0.169 0.831 43 H 0.294 0.706 44 H 0.163 0.837 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.212 19.845 13.097 23.778 hybrid contribution -1.472 -0.099 -0.658 1.615 sum -1.684 19.746 12.439 23.398 Atomic orbital electron populations 1.22527 0.94795 1.03671 1.00695 1.23016 0.95028 0.96608 0.86189 0.87725 1.21536 0.88378 0.92230 0.92730 0.88910 1.42524 1.38416 1.14560 1.39808 1.19527 1.09210 0.98380 1.08310 0.89777 1.25398 1.01967 0.96483 1.02547 1.69802 1.38302 1.07695 1.46196 0.85396 0.78898 0.76381 0.80186 1.20421 1.23327 1.20636 1.23092 0.98250 1.01971 0.93506 1.22214 0.95001 0.87783 0.96425 1.48508 1.51272 1.28222 1.04849 1.18238 0.81174 0.83564 0.81244 1.90706 1.52408 1.57176 1.46209 1.19985 1.01179 0.97185 0.95920 1.21218 0.94916 0.97369 0.95152 1.21142 0.96933 0.92950 1.00001 1.17857 0.95506 0.92249 0.94526 1.22312 0.97579 0.95233 0.87880 1.70492 1.15837 1.18916 1.24414 1.27126 0.95082 0.90034 0.89365 1.48103 1.36815 1.25507 1.08796 0.68961 1.78169 1.11854 1.05809 1.19952 1.21214 0.97210 0.98320 0.95717 1.22654 0.95546 0.91907 1.00889 0.92215 0.91389 0.92755 0.79552 0.94462 0.87821 0.89696 0.90244 0.93300 0.84401 0.83113 0.70550 0.83745 0.80976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.60 6.98 71.98 0.50 -5.10 16 2 C 0.10 2.97 2.71 45.34 0.12 3.09 16 3 H 0.11 2.61 6.17 -2.39 -0.01 2.60 16 4 C 0.16 5.34 3.53 46.18 0.16 5.50 16 5 H 0.09 2.82 8.06 -2.38 -0.02 2.80 16 6 N -0.72 -31.48 3.55 -317.31 -1.13 -32.61 16 7 C -0.22 -10.93 8.77 84.03 0.74 -10.19 16 8 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 9 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 10 N -0.97 -56.94 13.06 21.65 0.28 -56.66 16 11 Si 0.96 44.05 29.55 68.60 2.03 46.08 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.31 -14.65 7.11 99.48 0.71 -13.95 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 15 C -0.13 -3.63 6.69 31.99 0.21 -3.41 16 16 C 0.11 3.45 6.88 86.86 0.60 4.05 16 17 N -0.60 -19.73 3.06 -791.57 -2.43 -22.15 16 18 C 0.57 20.11 7.61 86.75 0.66 20.77 16 19 O -0.58 -23.80 16.69 -3.92 -0.07 -23.87 16 20 C -0.14 -4.28 5.07 -20.06 -0.10 -4.38 16 21 C -0.07 -1.92 9.57 22.49 0.22 -1.70 16 22 C -0.09 -2.31 9.67 22.44 0.22 -2.09 16 23 C 0.00 0.04 5.88 -19.99 -0.12 -0.08 16 24 C 0.25 6.13 7.77 137.41 1.07 7.20 16 25 N -0.57 -11.69 10.81 -193.12 -2.09 -13.78 16 26 C 0.28 2.90 13.11 180.37 2.36 5.26 16 27 N -0.47 -5.54 7.44 -60.51 -0.45 -5.99 16 28 H 0.46 1.56 8.96 -213.10 -1.91 -0.35 16 29 N -0.33 -7.30 12.41 -52.39 -0.65 -7.95 16 30 C -0.10 -2.69 9.66 22.44 0.22 -2.47 16 31 C -0.09 -2.51 6.20 22.49 0.14 -2.37 16 32 H 0.06 2.03 4.25 -2.39 -0.01 2.02 16 33 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.05 2.42 6.19 -2.39 -0.01 2.41 16 35 H 0.37 18.52 7.85 -92.71 -0.73 17.79 16 36 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 37 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.08 2.42 7.98 -2.39 -0.02 2.40 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.14 3.83 7.73 -2.91 -0.02 3.81 16 42 H 0.15 3.40 7.82 -2.91 -0.02 3.38 16 43 H 0.28 -0.71 8.06 -2.91 -0.02 -0.74 16 44 H 0.14 3.38 7.82 -2.91 -0.02 3.35 16 45 H 0.17 4.41 2.60 -2.91 -0.01 4.40 16 Total: -1.00 -74.73 365.69 1.40 -73.33 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -1.57 Total: 32.92 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 7.47 Total: 10.68 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -6.46 Total: -139.14 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.07 Total: -23.87 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -74.73 1.40 -73.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987309573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.283 kcal (2) G-P(sol) polarization free energy of solvation -74.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds