Wall clock time and date at job start Sat Apr 11 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99936 * 2 1 4 4 C 1.54323 * 109.77395 * 121.15530 * 2 1 3 5 5 H 1.09004 * 110.92142 * 23.46737 * 4 2 1 6 6 N 1.46498 * 110.58908 * 260.14541 * 4 2 1 7 7 C 1.36936 * 119.99713 * 160.19305 * 6 4 2 8 8 H 1.07991 * 120.00300 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99602 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00371 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00074 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46807 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47411 * 119.99541 * 11 9 7 14 14 H 1.48493 * 109.47184 * 240.00075 * 11 9 7 15 15 C 1.55151 * 102.86224 * 141.88086 * 4 2 1 16 16 C 1.54907 * 101.58813 * 324.30608 * 15 4 2 17 17 N 1.47019 * 109.88218 * 238.90261 * 2 1 3 18 18 C 1.34776 * 125.65049 * 61.68206 * 17 2 1 19 19 O 1.21575 * 119.99906 * 5.47239 * 18 17 2 20 20 C 1.47717 * 120.00244 * 185.47952 * 18 17 2 21 21 C 1.39713 * 120.02360 * 204.59809 * 20 18 17 22 22 C 1.37657 * 119.97437 * 179.97438 * 21 20 18 23 23 C 1.39505 * 120.02853 * 0.02562 * 22 21 20 24 24 C 1.48288 * 119.97838 * 179.97438 * 23 22 21 25 25 N 1.34022 * 125.65455 * 0.30620 * 24 23 22 26 26 C 1.30639 * 109.78569 * 180.17710 * 25 24 23 27 27 N 1.34570 * 108.30314 * 359.56596 * 26 25 24 28 28 H 0.97003 * 126.74359 * 180.26002 * 27 26 25 29 29 N 1.31552 * 125.65507 * 180.02562 * 24 23 22 30 30 C 1.39502 * 120.04640 * 0.23536 * 23 22 21 31 31 C 1.37667 * 120.02221 * 359.48315 * 30 23 22 32 32 H 1.08995 * 109.47359 * 179.64253 * 1 2 3 33 33 H 1.09002 * 109.47154 * 299.64271 * 1 2 3 34 34 H 1.09002 * 109.47096 * 59.64350 * 1 2 3 35 35 H 0.96996 * 120.00175 * 340.19187 * 6 4 2 36 36 H 0.96998 * 119.99546 * 179.97438 * 10 9 7 37 37 H 1.09000 * 111.00822 * 206.22724 * 15 4 2 38 38 H 1.09008 * 111.03521 * 82.39261 * 15 4 2 39 39 H 1.09003 * 110.36246 * 278.17149 * 16 15 4 40 40 H 1.08993 * 110.37255 * 155.84798 * 16 15 4 41 41 H 1.08005 * 120.01326 * 359.95909 * 21 20 18 42 42 H 1.08003 * 119.98814 * 179.97438 * 22 21 20 43 43 H 1.07997 * 125.84820 * 179.83050 * 26 25 24 44 44 H 1.08001 * 119.98526 * 179.74008 * 30 23 22 45 45 H 1.08003 * 120.00794 * 180.25547 * 31 30 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0521 -0.7513 1.2428 5 1 1.3049 -1.4513 1.6169 6 7 2.4473 0.1952 2.2887 7 6 2.5495 -0.2240 3.5883 8 1 2.3385 -1.2522 3.8423 9 6 2.9245 0.6728 4.5793 10 7 3.1822 1.9259 4.2698 11 14 3.0647 0.1009 6.3521 12 1 2.7252 -1.3424 6.4349 13 1 4.4542 0.3113 6.8318 14 1 2.1255 0.8792 7.1991 15 6 3.2888 -1.5102 0.6933 16 6 2.8191 -1.8764 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8086 -0.3613 -2.4657 19 8 1.2297 0.6773 -2.7190 20 6 2.2691 -1.2367 -3.5628 21 6 2.5212 -0.6988 -4.8274 22 6 2.9508 -1.5154 -5.8489 23 6 3.1340 -2.8797 -5.6220 24 6 3.5963 -3.7584 -6.7234 25 7 3.8761 -3.3632 -7.9731 26 6 4.2524 -4.3900 -8.6878 27 7 4.2322 -5.4821 -7.9019 28 1 4.4666 -6.3873 -8.1601 29 7 3.8048 -5.0543 -6.6344 30 6 2.8775 -3.4187 -4.3612 31 6 2.4533 -2.6029 -3.3366 32 1 -0.3634 -1.0276 -0.0064 33 1 -0.3633 0.5083 0.8932 34 1 -0.3633 0.5194 -0.8868 35 1 2.6365 1.1188 2.0607 36 1 3.4438 2.5526 4.9624 37 1 3.4896 -2.4066 1.2801 38 1 4.1642 -0.8615 0.6628 39 1 2.1971 -2.7712 -0.7141 40 1 3.6776 -2.0266 -1.3912 41 1 2.3787 0.3572 -5.0035 42 1 3.1453 -1.1000 -6.8266 43 1 4.5356 -4.3657 -9.7297 44 1 3.0156 -4.4757 -4.1878 45 1 2.2587 -3.0199 -2.3595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987309576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:17 Heat of formation + Delta-G solvation = 106.271263 kcal Electronic energy + Delta-G solvation = -28410.662125 eV Core-core repulsion = 24430.650799 eV Total energy + Delta-G solvation = -3980.011326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.49939 -40.46186 -38.75262 -37.28141 -34.25011 -33.58344 -32.34489 -31.93095 -31.08709 -30.82521 -30.25009 -28.94371 -25.32704 -25.06224 -23.68666 -23.15387 -22.51098 -22.06671 -20.81586 -20.23889 -19.25021 -18.90502 -17.30476 -17.12177 -16.38765 -16.13209 -15.92179 -15.81505 -15.10496 -14.70946 -14.52592 -14.35097 -13.88445 -13.69502 -13.58269 -13.37886 -13.10123 -12.89802 -12.72363 -12.64217 -12.25504 -12.11644 -11.88605 -11.64527 -11.26739 -11.12311 -11.01899 -10.88247 -10.80985 -10.57949 -10.52754 -10.42945 -10.24113 -10.01060 -9.78848 -9.65322 -9.19987 -8.95153 -8.83137 -8.39902 -7.03283 -5.81818 -3.12315 0.29682 1.19064 1.28153 2.14456 2.38229 3.02004 3.11662 3.40784 3.46407 3.48804 3.51107 3.75276 4.12233 4.42387 4.50756 4.54587 4.71335 4.76205 5.01128 5.14157 5.19911 5.29811 5.33846 5.42058 5.48540 5.57220 5.61142 5.67698 5.72690 5.78282 5.82962 5.92709 6.07995 6.11667 6.13277 6.18563 6.19706 6.29843 6.45020 6.52358 6.57110 6.59714 6.61410 6.74143 6.92425 7.54555 7.65933 7.71943 8.29645 8.35586 9.47048 10.01550 10.36188 11.40346 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.002064 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.832714 B =13565.806350 C =14294.775056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.080 0.920 4 C 0.177 3.823 5 H 0.066 0.934 6 N -0.715 5.715 7 C -0.243 4.243 8 H 0.073 0.927 9 C -0.011 4.011 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.157 4.157 16 C 0.093 3.907 17 N -0.602 5.602 18 C 0.568 3.432 19 O -0.536 6.536 20 C -0.106 4.106 21 C -0.068 4.068 22 C -0.083 4.083 23 C -0.003 4.003 24 C 0.270 3.730 25 N -0.533 5.533 26 C 0.265 3.735 27 N -0.484 5.484 28 H 0.444 0.556 29 N -0.302 5.302 30 C -0.091 4.091 31 C -0.101 4.101 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.226 0.774 44 H 0.136 0.864 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.655 -15.720 -26.234 30.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.098 0.902 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.091 0.909 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.218 1.218 15 C -0.199 4.199 16 C -0.030 4.030 17 N -0.335 5.335 18 C 0.357 3.643 19 O -0.415 6.415 20 C -0.109 4.109 21 C -0.087 4.087 22 C -0.103 4.103 23 C -0.006 4.006 24 C -0.009 4.009 25 N -0.261 5.261 26 C -0.034 4.034 27 N -0.203 5.203 28 H 0.290 0.710 29 N -0.131 5.131 30 C -0.111 4.111 31 C -0.120 4.120 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.242 0.758 44 H 0.153 0.847 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.197 -15.263 -25.724 29.935 hybrid contribution 0.580 -0.764 0.352 1.022 sum 1.776 -16.027 -25.372 30.063 Atomic orbital electron populations 1.22045 0.94785 1.01661 1.02750 1.21934 0.94425 0.97088 0.84185 0.90198 1.21251 0.93523 0.91633 0.87099 0.91638 1.42356 1.81131 1.08954 1.03085 1.19238 1.39256 0.95068 0.83795 0.90920 1.24777 1.02142 0.95646 0.98175 1.69678 1.52671 1.02901 1.32417 0.86110 0.77264 0.77687 0.85041 1.20499 1.21858 1.21834 1.23618 1.01518 1.01861 0.92859 1.22693 0.94595 0.88299 0.97426 1.48455 1.51472 1.28739 1.04826 1.17890 0.79807 0.85253 0.81374 1.90777 1.42918 1.24466 1.83299 1.20143 1.02117 0.94089 0.94598 1.21199 0.95867 1.00848 0.90791 1.21136 0.97632 0.91668 0.99836 1.17613 1.01241 0.91756 0.89984 1.22362 0.97707 0.88992 0.91868 1.70533 1.21719 1.30551 1.03265 1.26137 0.95988 0.81969 0.99281 1.48151 1.52234 1.12018 1.07870 0.71050 1.78268 1.22324 1.12892 0.99628 1.21111 0.98300 1.00458 0.91227 1.21799 0.97426 0.92567 1.00159 0.92999 0.90957 0.92136 0.77942 0.93421 0.90443 0.90501 0.91329 0.90698 0.84165 0.84106 0.75807 0.84652 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.10 37.16 0.34 -2.23 16 2 C 0.13 2.25 3.18 -66.95 -0.21 2.03 16 3 H 0.08 1.60 7.68 -51.93 -0.40 1.20 16 4 C 0.18 3.32 3.11 -66.10 -0.21 3.12 16 5 H 0.07 1.22 7.84 -51.93 -0.41 0.82 16 6 N -0.71 -17.18 5.25 -51.66 -0.27 -17.45 16 7 C -0.24 -6.45 9.98 -15.06 -0.15 -6.60 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 11 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 C -0.16 -2.53 6.76 -24.59 -0.17 -2.69 16 16 C 0.09 1.20 4.99 -2.53 -0.01 1.19 16 17 N -0.60 -9.38 3.06 -164.17 -0.50 -9.88 16 18 C 0.57 9.16 7.39 -12.39 -0.09 9.07 16 19 O -0.54 -10.32 15.85 5.30 0.08 -10.23 16 20 C -0.11 -1.38 5.67 -104.93 -0.60 -1.98 16 21 C -0.07 -0.82 9.57 -39.24 -0.38 -1.19 16 22 C -0.08 -0.89 9.67 -39.32 -0.38 -1.27 16 23 C 0.00 -0.03 5.88 -104.82 -0.62 -0.65 16 24 C 0.27 2.92 7.77 -156.59 -1.22 1.70 16 25 N -0.53 -5.06 10.81 -12.39 -0.13 -5.20 16 26 C 0.27 1.36 13.11 -90.69 -1.19 0.17 16 27 N -0.48 -2.62 7.44 29.52 0.22 -2.40 16 28 H 0.44 0.64 8.96 -182.34 -1.63 -0.99 16 29 N -0.30 -2.97 12.42 32.09 0.40 -2.57 16 30 C -0.09 -0.94 9.66 -39.32 -0.38 -1.32 16 31 C -0.10 -1.11 8.06 -39.24 -0.32 -1.43 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.04 7.07 -51.93 -0.37 0.67 16 35 H 0.39 10.07 7.50 -40.82 -0.31 9.77 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 39 H 0.07 0.74 6.82 -51.93 -0.35 0.38 16 40 H 0.07 0.87 6.83 -51.93 -0.35 0.51 16 41 H 0.14 1.64 7.83 -52.48 -0.41 1.23 16 42 H 0.14 1.36 7.82 -52.48 -0.41 0.95 16 43 H 0.23 -0.06 8.06 -52.49 -0.42 -0.48 16 44 H 0.14 1.23 7.82 -52.49 -0.41 0.82 16 45 H 0.15 1.41 4.59 -52.48 -0.24 1.17 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -35.16 375.69 -11.46 -46.62 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.96 Total: 7.92 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -5.67 Total: -2.48 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 0.43 Total: -64.34 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.16 -11.46 -46.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987309576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.896 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds