Wall clock time and date at job start Sat Apr 11 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99936 * 2 1 4 4 C 1.54323 * 109.77395 * 121.15530 * 2 1 3 5 5 H 1.09004 * 110.92142 * 23.46737 * 4 2 1 6 6 N 1.46498 * 110.58908 * 260.14541 * 4 2 1 7 7 C 1.36936 * 119.99713 * 160.19305 * 6 4 2 8 8 H 1.07991 * 120.00300 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99602 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00371 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00074 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46807 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47411 * 119.99541 * 11 9 7 14 14 H 1.48493 * 109.47184 * 240.00075 * 11 9 7 15 15 C 1.55151 * 102.86224 * 141.88086 * 4 2 1 16 16 C 1.54907 * 101.58813 * 324.30608 * 15 4 2 17 17 N 1.47019 * 109.88218 * 238.90261 * 2 1 3 18 18 C 1.34776 * 125.65049 * 61.68206 * 17 2 1 19 19 O 1.21575 * 119.99906 * 5.47239 * 18 17 2 20 20 C 1.47717 * 120.00244 * 185.47952 * 18 17 2 21 21 C 1.39713 * 120.02360 * 204.59809 * 20 18 17 22 22 C 1.37657 * 119.97437 * 179.97438 * 21 20 18 23 23 C 1.39505 * 120.02853 * 0.02562 * 22 21 20 24 24 C 1.48288 * 119.97838 * 179.97438 * 23 22 21 25 25 N 1.34022 * 125.65455 * 0.30620 * 24 23 22 26 26 C 1.30639 * 109.78569 * 180.17710 * 25 24 23 27 27 N 1.34570 * 108.30314 * 359.56596 * 26 25 24 28 28 H 0.97003 * 126.74359 * 180.26002 * 27 26 25 29 29 N 1.31552 * 125.65507 * 180.02562 * 24 23 22 30 30 C 1.39502 * 120.04640 * 0.23536 * 23 22 21 31 31 C 1.37667 * 120.02221 * 359.48315 * 30 23 22 32 32 H 1.08995 * 109.47359 * 179.64253 * 1 2 3 33 33 H 1.09002 * 109.47154 * 299.64271 * 1 2 3 34 34 H 1.09002 * 109.47096 * 59.64350 * 1 2 3 35 35 H 0.96996 * 120.00175 * 340.19187 * 6 4 2 36 36 H 0.96998 * 119.99546 * 179.97438 * 10 9 7 37 37 H 1.09000 * 111.00822 * 206.22724 * 15 4 2 38 38 H 1.09008 * 111.03521 * 82.39261 * 15 4 2 39 39 H 1.09003 * 110.36246 * 278.17149 * 16 15 4 40 40 H 1.08993 * 110.37255 * 155.84798 * 16 15 4 41 41 H 1.08005 * 120.01326 * 359.95909 * 21 20 18 42 42 H 1.08003 * 119.98814 * 179.97438 * 22 21 20 43 43 H 1.07997 * 125.84820 * 179.83050 * 26 25 24 44 44 H 1.08001 * 119.98526 * 179.74008 * 30 23 22 45 45 H 1.08003 * 120.00794 * 180.25547 * 31 30 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0521 -0.7513 1.2428 5 1 1.3049 -1.4513 1.6169 6 7 2.4473 0.1952 2.2887 7 6 2.5495 -0.2240 3.5883 8 1 2.3385 -1.2522 3.8423 9 6 2.9245 0.6728 4.5793 10 7 3.1822 1.9259 4.2698 11 14 3.0647 0.1009 6.3521 12 1 2.7252 -1.3424 6.4349 13 1 4.4542 0.3113 6.8318 14 1 2.1255 0.8792 7.1991 15 6 3.2888 -1.5102 0.6933 16 6 2.8191 -1.8764 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8086 -0.3613 -2.4657 19 8 1.2297 0.6773 -2.7190 20 6 2.2691 -1.2367 -3.5628 21 6 2.5212 -0.6988 -4.8274 22 6 2.9508 -1.5154 -5.8489 23 6 3.1340 -2.8797 -5.6220 24 6 3.5963 -3.7584 -6.7234 25 7 3.8761 -3.3632 -7.9731 26 6 4.2524 -4.3900 -8.6878 27 7 4.2322 -5.4821 -7.9019 28 1 4.4666 -6.3873 -8.1601 29 7 3.8048 -5.0543 -6.6344 30 6 2.8775 -3.4187 -4.3612 31 6 2.4533 -2.6029 -3.3366 32 1 -0.3634 -1.0276 -0.0064 33 1 -0.3633 0.5083 0.8932 34 1 -0.3633 0.5194 -0.8868 35 1 2.6365 1.1188 2.0607 36 1 3.4438 2.5526 4.9624 37 1 3.4896 -2.4066 1.2801 38 1 4.1642 -0.8615 0.6628 39 1 2.1971 -2.7712 -0.7141 40 1 3.6776 -2.0266 -1.3912 41 1 2.3787 0.3572 -5.0035 42 1 3.1453 -1.1000 -6.8266 43 1 4.5356 -4.3657 -9.7297 44 1 3.0156 -4.4757 -4.1878 45 1 2.2587 -3.0199 -2.3595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987309576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:16 Heat of formation + Delta-G solvation = 83.855209 kcal Electronic energy + Delta-G solvation = -28411.634158 eV Core-core repulsion = 24430.650799 eV Total energy + Delta-G solvation = -3980.983359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.05009 -41.64518 -39.79299 -38.62400 -35.97192 -34.40009 -33.43940 -32.92122 -32.45041 -31.84092 -31.27468 -30.37046 -26.92512 -26.02690 -25.00800 -24.21886 -23.61013 -22.88127 -21.73085 -21.49073 -20.53016 -19.39077 -19.15509 -18.31511 -17.55476 -17.14958 -16.81624 -16.51212 -16.46014 -15.92526 -15.58087 -15.44758 -15.32275 -15.07472 -14.74671 -14.56597 -14.47666 -14.11301 -13.84078 -13.57942 -13.28660 -13.27217 -13.15319 -13.03804 -12.92260 -12.64515 -12.51369 -12.21259 -12.05386 -11.98414 -11.66046 -11.59307 -11.45196 -11.14791 -11.04123 -11.01460 -10.88529 -10.04572 -9.78983 -9.56129 -9.00795 -7.92300 -5.22241 -0.56596 0.35052 0.72180 1.50588 1.51219 1.55993 1.61105 1.74678 1.84477 2.09358 2.58793 2.85090 2.96153 3.34433 3.44297 3.52607 3.70227 3.79356 3.92895 3.94131 4.01914 4.17556 4.19176 4.27840 4.34942 4.40625 4.46615 4.50734 4.65441 4.67869 4.72394 4.92129 4.94067 5.01492 5.04988 5.12283 5.20247 5.24233 5.25286 5.35013 5.38753 5.41706 5.47619 5.57548 5.75437 6.23585 6.27950 6.48808 7.00808 7.04444 7.34373 8.06542 8.30113 9.31466 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.002064 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.832714 B =13565.806350 C =14294.775056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.132 3.868 3 H 0.045 0.955 4 C 0.172 3.828 5 H 0.076 0.924 6 N -0.730 5.730 7 C -0.232 4.232 8 H 0.086 0.914 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.260 1.260 13 H -0.297 1.297 14 H -0.298 1.298 15 C -0.149 4.149 16 C 0.098 3.902 17 N -0.602 5.602 18 C 0.566 3.434 19 O -0.578 6.578 20 C -0.124 4.124 21 C -0.073 4.073 22 C -0.081 4.081 23 C -0.003 4.003 24 C 0.249 3.751 25 N -0.570 5.570 26 C 0.282 3.718 27 N -0.471 5.471 28 H 0.461 0.539 29 N -0.325 5.325 30 C -0.087 4.087 31 C -0.090 4.090 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.134 0.866 42 H 0.149 0.851 43 H 0.277 0.723 44 H 0.152 0.848 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 -19.659 -28.018 34.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.063 0.937 4 C 0.062 3.938 5 H 0.094 0.906 6 N -0.369 5.369 7 C -0.364 4.364 8 H 0.104 0.896 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.184 1.184 13 H -0.225 1.225 14 H -0.226 1.226 15 C -0.190 4.190 16 C -0.023 4.023 17 N -0.334 5.334 18 C 0.357 3.643 19 O -0.460 6.460 20 C -0.128 4.128 21 C -0.092 4.092 22 C -0.101 4.101 23 C -0.006 4.006 24 C -0.031 4.031 25 N -0.299 5.299 26 C -0.016 4.016 27 N -0.192 5.192 28 H 0.311 0.689 29 N -0.156 5.156 30 C -0.107 4.107 31 C -0.108 4.108 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.202 0.798 36 H 0.058 0.942 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.152 0.848 42 H 0.167 0.833 43 H 0.292 0.708 44 H 0.170 0.830 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.680 -19.312 -27.549 33.686 hybrid contribution 0.464 0.341 0.674 0.886 sum 2.144 -18.972 -26.876 32.967 Atomic orbital electron populations 1.21939 0.93946 1.02689 1.01675 1.21660 0.95019 0.95528 0.84985 0.93658 1.21453 0.95015 0.91085 0.86247 0.90611 1.42542 1.81490 1.09154 1.03696 1.19666 1.36658 0.95329 0.84725 0.89621 1.25597 1.03390 0.95885 1.02224 1.69848 1.55080 1.04180 1.33184 0.85067 0.76424 0.78051 0.80172 1.18399 1.22483 1.22589 1.23439 0.99013 1.01516 0.95035 1.22889 0.95679 0.88283 0.95455 1.48472 1.51547 1.29226 1.04168 1.18387 0.79000 0.85044 0.81874 1.90749 1.44869 1.26447 1.83895 1.19947 1.04430 0.94676 0.93775 1.21204 0.96186 1.00862 0.90952 1.21156 0.97451 0.91735 0.99759 1.17851 1.00169 0.91883 0.90691 1.22331 0.98977 0.89361 0.92425 1.70504 1.23397 1.32663 1.03287 1.27094 0.93348 0.80590 1.00580 1.48107 1.51243 1.13191 1.06612 0.68936 1.78143 1.22846 1.12569 1.02027 1.21265 0.97647 1.01099 0.90707 1.21887 0.96477 0.91361 1.01051 0.90811 0.92060 0.93146 0.79772 0.94205 0.88727 0.92810 0.87623 0.88604 0.84801 0.83316 0.70771 0.83023 0.81921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.10 71.98 0.66 -4.17 16 2 C 0.13 4.75 3.18 45.34 0.14 4.89 16 3 H 0.05 1.94 7.68 -2.39 -0.02 1.92 16 4 C 0.17 6.36 3.11 46.18 0.14 6.50 16 5 H 0.08 2.68 7.84 -2.39 -0.02 2.66 16 6 N -0.73 -35.67 5.25 -317.35 -1.67 -37.34 16 7 C -0.23 -12.30 9.98 84.03 0.84 -11.47 16 8 H 0.09 4.24 7.83 -2.92 -0.02 4.22 16 9 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 10 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 11 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 12 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 13 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 14 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 15 C -0.15 -4.55 6.76 31.98 0.22 -4.33 16 16 C 0.10 2.29 4.99 86.85 0.43 2.72 16 17 N -0.60 -18.33 3.06 -791.57 -2.43 -20.76 16 18 C 0.57 18.30 7.39 86.75 0.64 18.94 16 19 O -0.58 -23.11 15.85 -3.95 -0.06 -23.18 16 20 C -0.12 -3.17 5.67 -20.06 -0.11 -3.28 16 21 C -0.07 -1.76 9.57 22.49 0.22 -1.54 16 22 C -0.08 -1.70 9.67 22.44 0.22 -1.48 16 23 C 0.00 -0.06 5.88 -19.99 -0.12 -0.18 16 24 C 0.25 4.92 7.77 137.40 1.07 5.99 16 25 N -0.57 -9.60 10.81 -193.13 -2.09 -11.68 16 26 C 0.28 1.93 13.11 180.37 2.36 4.29 16 27 N -0.47 -3.64 7.44 -60.51 -0.45 -4.09 16 28 H 0.46 -0.20 8.96 -213.10 -1.91 -2.11 16 29 N -0.33 -5.64 12.42 -52.39 -0.65 -6.29 16 30 C -0.09 -1.60 9.66 22.44 0.22 -1.38 16 31 C -0.09 -1.75 8.06 22.49 0.18 -1.57 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 1.78 7.07 -2.39 -0.02 1.76 16 35 H 0.37 20.23 7.50 -92.71 -0.70 19.53 16 36 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 37 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.11 1.77 6.82 -2.39 -0.02 1.75 16 40 H 0.10 1.91 6.83 -2.39 -0.02 1.89 16 41 H 0.13 3.29 7.83 -2.91 -0.02 3.27 16 42 H 0.15 2.80 7.82 -2.91 -0.02 2.78 16 43 H 0.28 -1.49 8.06 -2.91 -0.02 -1.52 16 44 H 0.15 2.29 7.82 -2.91 -0.02 2.27 16 45 H 0.16 2.51 4.59 -2.91 -0.01 2.50 16 Total: -1.00 -79.69 375.69 0.99 -78.70 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -1.55 Total: 26.63 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 7.57 Total: 9.95 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -7.00 Total: -139.44 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.06 Total: -23.18 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -79.69 0.99 -78.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987309576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.554 kcal (2) G-P(sol) polarization free energy of solvation -79.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds