Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.99980 * 2 1 4 4 C 1.54328 * 109.99176 * 238.95681 * 2 1 3 5 5 H 1.08998 * 110.67283 * 337.05760 * 4 2 1 6 6 N 1.46501 * 110.84873 * 100.20366 * 4 2 1 7 7 C 1.36941 * 120.00103 * 200.14839 * 6 4 2 8 8 H 1.07997 * 120.00081 * 359.97438 * 7 6 4 9 9 C 1.38814 * 119.99949 * 180.02562 * 7 6 4 10 10 N 1.31617 * 120.00122 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00034 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47014 * 359.97438 * 11 9 7 13 13 H 1.48490 * 109.47470 * 119.99526 * 11 9 7 14 14 H 1.48502 * 109.46764 * 239.99592 * 11 9 7 15 15 C 1.55158 * 103.02486 * 218.66882 * 4 2 1 16 16 C 1.54907 * 101.57657 * 35.30882 * 15 4 2 17 17 N 1.47024 * 109.87697 * 121.09422 * 2 1 3 18 18 C 1.34777 * 125.65286 * 298.39516 * 17 2 1 19 19 O 1.21563 * 120.00365 * 186.00694 * 18 17 2 20 20 C 1.47693 * 119.99450 * 6.00122 * 18 17 2 21 21 C 1.39699 * 120.07546 * 163.78080 * 20 18 17 22 22 C 1.37734 * 119.91744 * 180.02562 * 21 20 18 23 23 C 1.39030 * 120.08139 * 0.02562 * 22 21 20 24 24 N 1.39935 * 119.92027 * 179.97438 * 23 22 21 25 25 C 1.36313 * 126.86745 * 180.02562 * 24 23 22 26 26 C 1.34961 * 106.77773 * 179.73959 * 25 24 23 27 27 N 1.33368 * 109.02152 * 0.25990 * 26 25 24 28 28 N 1.28765 * 109.92149 * 0.02562 * 27 26 25 29 29 C 1.39029 * 120.15915 * 0.23293 * 23 22 21 30 30 C 1.37741 * 120.07932 * 359.48500 * 29 23 22 31 31 H 1.08994 * 109.47567 * 278.79596 * 1 2 3 32 32 H 1.09004 * 109.46307 * 38.78987 * 1 2 3 33 33 H 1.08996 * 109.46993 * 158.78582 * 1 2 3 34 34 H 0.97001 * 120.00126 * 20.14146 * 6 4 2 35 35 H 0.97004 * 120.00310 * 180.02562 * 10 9 7 36 36 H 1.08991 * 111.00544 * 277.23715 * 15 4 2 37 37 H 1.09001 * 111.03756 * 153.39370 * 15 4 2 38 38 H 1.09008 * 110.36810 * 204.14946 * 16 15 4 39 39 H 1.09005 * 110.37060 * 81.82957 * 16 15 4 40 40 H 1.07994 * 120.03794 * 0.04144 * 21 20 18 41 41 H 1.08005 * 119.95839 * 179.97438 * 22 21 20 42 42 H 1.08001 * 126.60694 * 0.02562 * 25 24 23 43 43 H 1.08009 * 125.48781 * 180.28573 * 26 25 24 44 44 H 1.07999 * 119.95998 * 179.74600 * 29 23 22 45 45 H 1.07997 * 120.04226 * 180.23202 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 1.3067 -1.4405 -1.6225 6 7 2.4638 0.1966 -2.2862 7 6 2.5656 -0.2215 -3.5862 8 1 2.3469 -1.2476 -3.8421 9 6 2.9510 0.6734 -4.5750 10 7 3.2181 1.9239 -4.2631 11 14 3.0892 0.1032 -6.3485 12 1 2.7373 -1.3370 -6.4342 13 1 2.1590 0.8917 -7.1958 14 1 4.4816 0.3014 -6.8250 15 6 3.2864 -1.5185 -0.6913 16 6 2.8098 -1.8826 0.7369 17 7 2.0299 -0.7141 1.1840 18 6 1.8072 -0.3621 2.4658 19 8 2.3601 -0.9634 3.3661 20 6 0.8916 0.7543 2.7765 21 6 0.3926 0.9107 4.0720 22 6 -0.4615 1.9527 4.3580 23 6 -0.8277 2.8478 3.3592 24 7 -1.6961 3.9049 3.6534 25 6 -2.1459 4.8585 2.7894 26 6 -2.9616 5.6699 3.4949 27 7 -3.0151 5.2418 4.7569 28 7 -2.2750 4.1975 4.8977 29 6 -0.3373 2.6922 2.0676 30 6 0.5218 1.6559 1.7756 31 1 -0.3634 0.1571 1.0155 32 1 -0.3632 0.8011 -0.6439 33 1 -0.3633 -0.9580 -0.3719 34 1 2.6606 1.1183 -2.0564 35 1 3.4870 2.5493 -4.9540 36 1 4.1669 -0.8771 -0.6577 37 1 3.4813 -2.4158 -1.2787 38 1 3.6654 -2.0413 1.3934 39 1 2.1799 -2.7718 0.7116 40 1 0.6765 0.2156 4.8482 41 1 -0.8480 2.0740 5.3592 42 1 -1.9008 4.9450 1.7412 43 1 -3.4869 6.5274 3.1009 44 1 -0.6271 3.3870 1.2933 45 1 0.9053 1.5377 0.7729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987331200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = 153.673618 kcal Electronic energy + Delta-G solvation = -29188.695720 eV Core-core repulsion = 25210.739915 eV Total energy + Delta-G solvation = -3977.955805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.53097 -41.00729 -38.95747 -37.70124 -34.96433 -34.26225 -32.71125 -31.63837 -31.16038 -30.85423 -29.72491 -29.09659 -25.68424 -25.07118 -23.76793 -23.29807 -22.98792 -21.65523 -21.51722 -20.43041 -19.61870 -18.80026 -17.73351 -17.13179 -16.28884 -16.18049 -15.71366 -15.61361 -15.48113 -14.87990 -14.64182 -14.49057 -14.32235 -14.06529 -13.72222 -13.55657 -13.32286 -13.20723 -12.81365 -12.74924 -12.34213 -12.19997 -12.07827 -11.74100 -11.56595 -11.44222 -11.36988 -11.15804 -11.02987 -10.95030 -10.74011 -10.38523 -10.18917 -9.96749 -9.83306 -9.76666 -9.33521 -9.07896 -8.79096 -8.54242 -7.18449 -5.95558 -3.26405 -0.03114 0.94535 1.30387 1.75501 2.19680 2.69188 2.92803 3.32144 3.38862 3.40614 3.52118 4.00566 4.11612 4.28118 4.42054 4.44042 4.55946 4.68032 4.76286 4.83411 4.87596 4.98310 5.07667 5.18116 5.18677 5.34641 5.36065 5.47604 5.55313 5.60323 5.65305 5.69366 5.75028 5.80461 5.92087 6.01310 6.02637 6.10520 6.12677 6.13763 6.28575 6.36896 6.49009 6.52876 6.76897 7.51935 7.55322 7.76173 8.10403 8.21384 9.33740 9.85042 10.19692 11.26489 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011928 B = 0.002883 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.779907 B = 9711.447581 C =11755.507426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 H 0.090 0.910 4 C 0.178 3.822 5 H 0.069 0.931 6 N -0.715 5.715 7 C -0.245 4.245 8 H 0.073 0.927 9 C -0.008 4.008 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.156 4.156 16 C 0.106 3.894 17 N -0.601 5.601 18 C 0.573 3.427 19 O -0.542 6.542 20 C -0.133 4.133 21 C -0.037 4.037 22 C -0.125 4.125 23 C 0.160 3.840 24 N -0.318 5.318 25 C 0.026 3.974 26 C -0.074 4.074 27 N -0.232 5.232 28 N -0.064 5.064 29 C -0.143 4.143 30 C -0.077 4.077 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.385 0.615 35 H 0.257 0.743 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.199 0.801 43 H 0.191 0.809 44 H 0.140 0.860 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.171 1.789 12.351 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.003 3.997 3 H 0.107 0.893 4 C 0.066 3.934 5 H 0.086 0.914 6 N -0.356 5.356 7 C -0.376 4.376 8 H 0.091 0.909 9 C -0.204 4.204 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.198 4.198 16 C -0.017 4.017 17 N -0.334 5.334 18 C 0.363 3.637 19 O -0.421 6.421 20 C -0.137 4.137 21 C -0.057 4.057 22 C -0.145 4.145 23 C 0.068 3.932 24 N -0.099 5.099 25 C -0.123 4.123 26 C -0.229 4.229 27 N -0.102 5.102 28 N -0.042 5.042 29 C -0.164 4.164 30 C -0.095 4.095 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.219 0.781 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.216 0.784 43 H 0.208 0.792 44 H 0.158 0.842 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.056 1.037 14.199 16.873 hybrid contribution 0.302 0.444 -2.157 2.223 sum -8.754 1.481 12.041 14.961 Atomic orbital electron populations 1.22775 0.94548 1.03713 1.02393 1.22343 0.94369 0.96798 0.86199 0.89283 1.21298 0.93903 0.91521 0.86636 0.91351 1.42327 1.80903 1.09130 1.03208 1.19222 1.39330 0.95355 0.83645 0.90868 1.24753 1.01816 0.95657 0.98223 1.69653 1.52293 1.03134 1.32623 0.86118 0.77370 0.77781 0.84877 1.20456 1.21760 1.21769 1.23598 1.01169 1.01911 0.93077 1.22326 0.95240 0.87534 0.96551 1.48419 1.51857 1.28567 1.04547 1.17737 0.81358 0.83215 0.81412 1.90769 1.50690 1.55477 1.45173 1.20061 1.01062 0.97764 0.94800 1.21150 0.92966 0.95939 0.95625 1.20831 0.99782 0.94464 0.99400 1.17831 0.92561 0.87789 0.95051 1.48050 1.32618 1.19912 1.09359 1.23678 0.98815 0.90817 0.99028 1.23291 1.05136 1.04645 0.89781 1.74350 1.12727 1.04904 1.18230 1.82129 1.10092 1.12153 0.99783 1.20866 1.00676 1.00660 0.94156 1.22780 0.93775 0.91123 1.01829 0.91314 0.90476 0.91645 0.78094 0.93348 0.90507 0.90279 0.90690 0.91576 0.83559 0.83757 0.78426 0.79158 0.84193 0.80508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 7.75 37.16 0.29 -1.78 16 2 C 0.11 1.46 2.49 -66.95 -0.17 1.29 16 3 H 0.09 1.24 5.75 -51.93 -0.30 0.95 16 4 C 0.18 2.94 3.11 -66.09 -0.21 2.74 16 5 H 0.07 1.14 7.50 -51.93 -0.39 0.75 16 6 N -0.72 -15.33 5.25 -51.65 -0.27 -15.60 16 7 C -0.24 -6.04 9.98 -15.06 -0.15 -6.19 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 10 N -0.93 -25.64 13.06 55.49 0.72 -24.92 16 11 Si 0.91 20.73 29.55 -169.99 -5.02 15.71 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 C -0.16 -2.40 6.77 -24.58 -0.17 -2.56 16 16 C 0.11 1.46 6.94 -2.53 -0.02 1.44 16 17 N -0.60 -8.48 3.06 -164.17 -0.50 -8.98 16 18 C 0.57 8.48 7.59 -12.40 -0.09 8.39 16 19 O -0.54 -9.49 16.68 5.31 0.09 -9.41 16 20 C -0.13 -1.63 5.03 -104.95 -0.53 -2.16 16 21 C -0.04 -0.42 9.58 -39.22 -0.38 -0.79 16 22 C -0.12 -1.31 9.66 -39.47 -0.38 -1.69 16 23 C 0.16 1.67 6.70 -83.57 -0.56 1.11 16 24 N -0.32 -3.39 3.85 -10.50 -0.04 -3.43 16 25 C 0.03 0.21 10.92 -16.72 -0.18 0.03 16 26 C -0.07 -0.63 11.86 -18.05 -0.21 -0.84 16 27 N -0.23 -2.80 12.33 30.09 0.37 -2.43 16 28 N -0.06 -0.81 13.15 60.35 0.79 -0.02 16 29 C -0.14 -1.33 9.46 -39.47 -0.37 -1.71 16 30 C -0.08 -0.83 6.28 -39.22 -0.25 -1.07 16 31 H 0.07 0.76 4.46 -51.93 -0.23 0.53 16 32 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 33 H 0.06 0.77 7.61 -51.93 -0.39 0.38 16 34 H 0.38 8.78 7.51 -40.82 -0.31 8.47 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.05 7.98 -51.92 -0.41 0.64 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.15 1.54 7.73 -52.49 -0.41 1.14 16 41 H 0.14 1.41 7.72 -52.48 -0.41 1.01 16 42 H 0.20 0.80 7.16 -52.49 -0.38 0.42 16 43 H 0.19 0.92 8.06 -52.48 -0.42 0.50 16 44 H 0.14 0.95 6.82 -52.49 -0.36 0.59 16 45 H 0.18 1.94 2.52 -52.49 -0.13 1.81 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -31.35 367.34 -7.16 -38.52 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.37 Total: 9.12 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -3.47 Total: -4.09 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 1.07 Total: -55.38 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.35 -7.16 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987331200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.189 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds