Wall clock time and date at job start Sat Apr 11 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.99980 * 2 1 4 4 C 1.54328 * 109.99176 * 238.95681 * 2 1 3 5 5 H 1.08998 * 110.67283 * 337.05760 * 4 2 1 6 6 N 1.46501 * 110.84873 * 100.20366 * 4 2 1 7 7 C 1.36941 * 120.00103 * 200.14839 * 6 4 2 8 8 H 1.07997 * 120.00081 * 359.97438 * 7 6 4 9 9 C 1.38814 * 119.99949 * 180.02562 * 7 6 4 10 10 N 1.31617 * 120.00122 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00034 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47014 * 359.97438 * 11 9 7 13 13 H 1.48490 * 109.47470 * 119.99526 * 11 9 7 14 14 H 1.48502 * 109.46764 * 239.99592 * 11 9 7 15 15 C 1.55158 * 103.02486 * 218.66882 * 4 2 1 16 16 C 1.54907 * 101.57657 * 35.30882 * 15 4 2 17 17 N 1.47024 * 109.87697 * 121.09422 * 2 1 3 18 18 C 1.34777 * 125.65286 * 298.39516 * 17 2 1 19 19 O 1.21563 * 120.00365 * 186.00694 * 18 17 2 20 20 C 1.47693 * 119.99450 * 6.00122 * 18 17 2 21 21 C 1.39699 * 120.07546 * 163.78080 * 20 18 17 22 22 C 1.37734 * 119.91744 * 180.02562 * 21 20 18 23 23 C 1.39030 * 120.08139 * 0.02562 * 22 21 20 24 24 N 1.39935 * 119.92027 * 179.97438 * 23 22 21 25 25 C 1.36313 * 126.86745 * 180.02562 * 24 23 22 26 26 C 1.34961 * 106.77773 * 179.73959 * 25 24 23 27 27 N 1.33368 * 109.02152 * 0.25990 * 26 25 24 28 28 N 1.28765 * 109.92149 * 0.02562 * 27 26 25 29 29 C 1.39029 * 120.15915 * 0.23293 * 23 22 21 30 30 C 1.37741 * 120.07932 * 359.48500 * 29 23 22 31 31 H 1.08994 * 109.47567 * 278.79596 * 1 2 3 32 32 H 1.09004 * 109.46307 * 38.78987 * 1 2 3 33 33 H 1.08996 * 109.46993 * 158.78582 * 1 2 3 34 34 H 0.97001 * 120.00126 * 20.14146 * 6 4 2 35 35 H 0.97004 * 120.00310 * 180.02562 * 10 9 7 36 36 H 1.08991 * 111.00544 * 277.23715 * 15 4 2 37 37 H 1.09001 * 111.03756 * 153.39370 * 15 4 2 38 38 H 1.09008 * 110.36810 * 204.14946 * 16 15 4 39 39 H 1.09005 * 110.37060 * 81.82957 * 16 15 4 40 40 H 1.07994 * 120.03794 * 0.04144 * 21 20 18 41 41 H 1.08005 * 119.95839 * 179.97438 * 22 21 20 42 42 H 1.08001 * 126.60694 * 0.02562 * 25 24 23 43 43 H 1.08009 * 125.48781 * 180.28573 * 26 25 24 44 44 H 1.07999 * 119.95998 * 179.74600 * 29 23 22 45 45 H 1.07997 * 120.04226 * 180.23202 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 1.3067 -1.4405 -1.6225 6 7 2.4638 0.1966 -2.2862 7 6 2.5656 -0.2215 -3.5862 8 1 2.3469 -1.2476 -3.8421 9 6 2.9510 0.6734 -4.5750 10 7 3.2181 1.9239 -4.2631 11 14 3.0892 0.1032 -6.3485 12 1 2.7373 -1.3370 -6.4342 13 1 2.1590 0.8917 -7.1958 14 1 4.4816 0.3014 -6.8250 15 6 3.2864 -1.5185 -0.6913 16 6 2.8098 -1.8826 0.7369 17 7 2.0299 -0.7141 1.1840 18 6 1.8072 -0.3621 2.4658 19 8 2.3601 -0.9634 3.3661 20 6 0.8916 0.7543 2.7765 21 6 0.3926 0.9107 4.0720 22 6 -0.4615 1.9527 4.3580 23 6 -0.8277 2.8478 3.3592 24 7 -1.6961 3.9049 3.6534 25 6 -2.1459 4.8585 2.7894 26 6 -2.9616 5.6699 3.4949 27 7 -3.0151 5.2418 4.7569 28 7 -2.2750 4.1975 4.8977 29 6 -0.3373 2.6922 2.0676 30 6 0.5218 1.6559 1.7756 31 1 -0.3634 0.1571 1.0155 32 1 -0.3632 0.8011 -0.6439 33 1 -0.3633 -0.9580 -0.3719 34 1 2.6606 1.1183 -2.0564 35 1 3.4870 2.5493 -4.9540 36 1 4.1669 -0.8771 -0.6577 37 1 3.4813 -2.4158 -1.2787 38 1 3.6654 -2.0413 1.3934 39 1 2.1799 -2.7718 0.7116 40 1 0.6765 0.2156 4.8482 41 1 -0.8480 2.0740 5.3592 42 1 -1.9008 4.9450 1.7412 43 1 -3.4869 6.5274 3.1009 44 1 -0.6271 3.3870 1.2933 45 1 0.9053 1.5377 0.7729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987331200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:27 Heat of formation + Delta-G solvation = 134.231863 kcal Electronic energy + Delta-G solvation = -29189.538778 eV Core-core repulsion = 25210.739915 eV Total energy + Delta-G solvation = -3978.798863 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.26177 -42.05623 -39.91492 -38.93344 -36.05664 -35.65279 -33.72083 -33.19425 -31.94498 -31.70574 -30.89799 -30.28494 -27.03313 -26.04374 -24.90488 -24.55824 -23.98481 -22.53712 -22.35018 -21.64087 -20.71189 -19.60224 -19.25676 -18.39280 -17.44621 -16.99799 -16.94153 -16.55254 -16.28831 -16.12789 -15.72585 -15.62459 -15.30812 -15.06226 -14.96648 -14.73622 -14.58667 -14.20839 -13.98656 -13.75746 -13.55108 -13.15405 -13.02245 -12.97019 -12.91904 -12.67630 -12.50204 -12.30489 -12.26831 -12.10304 -12.04433 -11.89219 -11.68141 -11.51935 -11.10781 -10.89987 -10.46426 -10.13453 -9.82390 -9.51886 -8.98292 -7.91094 -5.19167 -0.85198 0.13762 0.49989 1.03925 1.51904 1.52010 1.54568 1.62036 1.68758 1.81990 2.59545 2.61055 3.22098 3.28213 3.40880 3.50594 3.58646 3.66650 3.78573 3.90322 3.93826 3.97771 4.11162 4.14437 4.20129 4.28397 4.37332 4.39701 4.45451 4.55345 4.67964 4.75885 4.80616 4.89143 4.92142 4.97231 5.04838 5.08522 5.17582 5.22468 5.27611 5.31778 5.37027 5.44101 5.60227 5.76797 6.29577 6.39573 6.96341 7.02831 7.38956 8.09008 8.32906 9.31778 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011928 B = 0.002883 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.779907 B = 9711.447581 C =11755.507426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.116 3.884 3 H 0.089 0.911 4 C 0.172 3.828 5 H 0.074 0.926 6 N -0.723 5.723 7 C -0.232 4.232 8 H 0.079 0.921 9 C -0.067 4.067 10 N -0.964 5.964 11 Si 0.963 3.037 12 H -0.267 1.267 13 H -0.296 1.296 14 H -0.301 1.301 15 C -0.149 4.149 16 C 0.110 3.890 17 N -0.602 5.602 18 C 0.571 3.429 19 O -0.576 6.576 20 C -0.148 4.148 21 C -0.038 4.038 22 C -0.127 4.127 23 C 0.159 3.841 24 N -0.325 5.325 25 C 0.038 3.962 26 C -0.077 4.077 27 N -0.261 5.261 28 N -0.107 5.107 29 C -0.130 4.130 30 C -0.074 4.074 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.376 0.624 35 H 0.250 0.750 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.241 0.759 43 H 0.225 0.775 44 H 0.173 0.827 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.566 2.045 11.554 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 H 0.107 0.893 4 C 0.063 3.937 5 H 0.092 0.908 6 N -0.363 5.363 7 C -0.364 4.364 8 H 0.097 0.903 9 C -0.260 4.260 10 N -0.614 5.614 11 Si 0.793 3.207 12 H -0.191 1.191 13 H -0.223 1.223 14 H -0.228 1.228 15 C -0.189 4.189 16 C -0.013 4.013 17 N -0.334 5.334 18 C 0.362 3.638 19 O -0.458 6.458 20 C -0.151 4.151 21 C -0.057 4.057 22 C -0.147 4.147 23 C 0.066 3.934 24 N -0.107 5.107 25 C -0.111 4.111 26 C -0.233 4.233 27 N -0.129 5.129 28 N -0.084 5.084 29 C -0.151 4.151 30 C -0.092 4.092 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.209 0.791 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.257 0.743 43 H 0.241 0.759 44 H 0.191 0.809 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.476 1.245 13.437 17.084 hybrid contribution 0.702 0.377 -1.866 2.029 sum -9.775 1.622 11.572 15.234 Atomic orbital electron populations 1.22726 0.92581 1.04167 1.03266 1.22225 0.95754 0.96139 0.84594 0.89326 1.21472 0.94395 0.91169 0.86705 0.90817 1.42421 1.81063 1.09507 1.03311 1.19555 1.36688 0.95286 0.84894 0.90313 1.25397 1.03218 0.95988 1.01424 1.69777 1.54533 1.04054 1.33085 0.85230 0.76391 0.77862 0.81190 1.19110 1.22305 1.22826 1.23429 0.99781 1.01558 0.94180 1.22305 0.95551 0.88170 0.95227 1.48457 1.51695 1.28572 1.04630 1.18113 0.81231 0.83421 0.80995 1.90746 1.52186 1.56864 1.45997 1.19928 1.01670 0.97815 0.95718 1.21135 0.93064 0.96176 0.95324 1.20871 0.99605 0.94400 0.99822 1.17974 0.92343 0.87648 0.95393 1.48160 1.32634 1.20364 1.09576 1.24481 0.97189 0.89115 1.00358 1.23975 1.05126 1.05498 0.88669 1.74326 1.13163 1.05210 1.20243 1.82122 1.11846 1.13302 1.01081 1.21113 0.99298 1.00312 0.94345 1.22708 0.94010 0.91246 1.01247 0.90340 0.89544 0.91559 0.79093 0.94116 0.92434 0.89655 0.91034 0.89808 0.83649 0.83610 0.74269 0.75876 0.80934 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 7.75 71.98 0.56 -3.00 16 2 C 0.12 3.00 2.49 45.34 0.11 3.12 16 3 H 0.09 2.35 5.75 -2.39 -0.01 2.34 16 4 C 0.17 5.46 3.11 46.18 0.14 5.61 16 5 H 0.07 2.30 7.50 -2.39 -0.02 2.28 16 6 N -0.72 -30.39 5.25 -317.32 -1.67 -32.06 16 7 C -0.23 -11.22 9.98 84.03 0.84 -10.38 16 8 H 0.08 3.66 7.83 -2.91 -0.02 3.63 16 9 C -0.07 -3.49 5.50 84.86 0.47 -3.02 16 10 N -0.96 -53.41 13.06 21.65 0.28 -53.13 16 11 Si 0.96 42.35 29.55 68.60 2.03 44.38 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 13 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 15 C -0.15 -4.42 6.77 31.99 0.22 -4.20 16 16 C 0.11 2.90 6.94 86.85 0.60 3.51 16 17 N -0.60 -16.31 3.06 -791.57 -2.43 -18.74 16 18 C 0.57 16.55 7.59 86.74 0.66 17.20 16 19 O -0.58 -20.23 16.68 -3.91 -0.07 -20.29 16 20 C -0.15 -3.46 5.03 -20.07 -0.10 -3.56 16 21 C -0.04 -0.81 9.58 22.50 0.22 -0.60 16 22 C -0.13 -2.55 9.66 22.34 0.22 -2.34 16 23 C 0.16 2.98 6.70 38.23 0.26 3.24 16 24 N -0.33 -6.25 3.85 -187.12 -0.72 -6.97 16 25 C 0.04 0.47 10.92 83.24 0.91 1.38 16 26 C -0.08 -1.10 11.86 83.71 0.99 -0.11 16 27 N -0.26 -6.00 12.33 -58.72 -0.72 -6.73 16 28 N -0.11 -2.63 13.15 37.02 0.49 -2.15 16 29 C -0.13 -2.02 9.46 22.34 0.21 -1.81 16 30 C -0.07 -1.42 6.28 22.50 0.14 -1.28 16 31 H 0.08 1.53 4.46 -2.39 -0.01 1.52 16 32 H 0.09 1.68 8.08 -2.38 -0.02 1.66 16 33 H 0.07 1.39 7.61 -2.39 -0.02 1.38 16 34 H 0.38 17.05 7.51 -92.71 -0.70 16.35 16 35 H 0.25 13.62 8.31 -92.71 -0.77 12.84 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.07 1.97 7.98 -2.38 -0.02 1.95 16 39 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.15 3.10 7.73 -2.91 -0.02 3.08 16 41 H 0.15 2.85 7.72 -2.91 -0.02 2.83 16 42 H 0.24 0.63 7.16 -2.91 -0.02 0.61 16 43 H 0.22 1.37 8.06 -2.91 -0.02 1.34 16 44 H 0.17 1.49 6.82 -2.91 -0.02 1.47 16 45 H 0.18 3.45 2.52 -2.91 -0.01 3.44 16 Total: -1.00 -68.54 367.34 3.99 -64.55 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.36 Total: 27.38 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.44 Total: 3.75 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -4.77 Total: -119.77 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.07 Total: -20.29 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -68.54 3.99 -64.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987331200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.778 kcal (2) G-P(sol) polarization free energy of solvation -68.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds