Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.99630 * 2 1 4 4 C 1.54338 * 109.98762 * 238.96407 * 2 1 3 5 5 H 1.09003 * 110.84896 * 100.20141 * 4 2 1 6 6 N 1.46497 * 110.66722 * 337.04729 * 4 2 1 7 7 C 1.36938 * 120.00045 * 95.94530 * 6 4 2 8 8 H 1.07995 * 119.99789 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99812 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99797 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00093 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47195 * 90.00140 * 11 9 7 13 13 H 1.48501 * 109.47037 * 210.00343 * 11 9 7 14 14 H 1.48503 * 109.47296 * 329.99965 * 11 9 7 15 15 C 1.55159 * 103.01501 * 218.66319 * 4 2 1 16 16 C 1.54906 * 101.58241 * 35.30828 * 15 4 2 17 17 N 1.47016 * 109.88165 * 121.09682 * 2 1 3 18 18 C 1.34780 * 125.64832 * 298.39411 * 17 2 1 19 19 O 1.21572 * 119.99708 * 186.03320 * 18 17 2 20 20 C 1.47692 * 119.99922 * 6.02557 * 18 17 2 21 21 C 1.39694 * 120.07408 * 163.20804 * 20 18 17 22 22 C 1.37745 * 119.91483 * 180.02562 * 21 20 18 23 23 C 1.39028 * 120.08107 * 0.02562 * 22 21 20 24 24 N 1.39935 * 119.91942 * 179.97438 * 23 22 21 25 25 C 1.36311 * 126.86416 * 179.97438 * 24 23 22 26 26 C 1.34960 * 106.77885 * 179.74264 * 25 24 23 27 27 N 1.33379 * 109.01498 * 0.02562 * 26 25 24 28 28 N 1.28763 * 109.92530 * 359.97438 * 27 26 25 29 29 C 1.39028 * 120.15838 * 0.25386 * 23 22 21 30 30 C 1.37742 * 120.08039 * 359.48697 * 29 23 22 31 31 H 1.08999 * 109.47115 * 283.48987 * 1 2 3 32 32 H 1.09000 * 109.47298 * 43.48461 * 1 2 3 33 33 H 1.09001 * 109.47006 * 163.48786 * 1 2 3 34 34 H 0.96995 * 119.99771 * 275.93617 * 6 4 2 35 35 H 0.96994 * 120.00176 * 180.02562 * 10 9 7 36 36 H 1.08995 * 111.00658 * 277.23016 * 15 4 2 37 37 H 1.08999 * 111.00037 * 153.38279 * 15 4 2 38 38 H 1.08996 * 110.36695 * 204.14970 * 16 15 4 39 39 H 1.09007 * 110.36944 * 81.82527 * 16 15 4 40 40 H 1.07997 * 120.04362 * 0.04912 * 21 20 18 41 41 H 1.08003 * 119.95802 * 179.97438 * 22 21 20 42 42 H 1.07997 * 126.60810 * 359.74486 * 25 24 23 43 43 H 1.07998 * 125.49538 * 180.02562 * 26 25 24 44 44 H 1.07997 * 119.95929 * 179.72947 * 29 23 22 45 45 H 1.07994 * 120.04146 * 180.26029 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 2.3598 -0.0449 -2.0192 6 7 1.0482 -1.6788 -1.7532 7 6 0.2209 -1.2985 -2.7760 8 1 0.3124 -0.3121 -3.2061 9 6 -0.7352 -2.1808 -3.2600 10 7 -1.5306 -1.8151 -4.2428 11 14 -0.8928 -3.8872 -2.5165 12 1 -1.8585 -3.8486 -1.3891 13 1 -1.3778 -4.8352 -3.5516 14 1 0.4326 -4.3343 -2.0179 15 6 3.2864 -1.5183 -0.6915 16 6 2.8099 -1.8825 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8074 -0.3620 2.4657 19 8 2.3608 -0.9631 3.3660 20 6 0.8913 0.7540 2.7765 21 6 0.3831 0.9032 4.0692 22 6 -0.4714 1.9449 4.3554 23 6 -0.8287 2.8468 3.3595 24 7 -1.6975 3.9035 3.6538 25 6 -2.1386 4.8637 2.7926 26 6 -2.9584 5.6719 3.4969 27 7 -3.0268 5.2325 4.7543 28 7 -2.2933 4.1834 4.8930 29 6 -0.3295 2.6979 2.0705 30 6 0.5297 1.6618 1.7783 31 1 -0.3633 0.2397 0.9993 32 1 -0.3634 0.7456 -0.7072 33 1 -0.3633 -0.9853 -0.2921 34 1 0.9659 -2.5646 -1.3667 35 1 -2.1989 -2.4315 -4.5808 36 1 4.1669 -0.8769 -0.6580 37 1 3.4807 -2.4155 -1.2792 38 1 3.6655 -2.0411 1.3931 39 1 2.1801 -2.7718 0.7115 40 1 0.6602 0.2029 4.8433 41 1 -0.8650 2.0607 5.3544 42 1 -1.8815 4.9591 1.7480 43 1 -3.4758 6.5353 3.1054 44 1 -0.6126 3.3979 1.2983 45 1 0.9205 1.5492 0.7778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987331202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = 163.309201 kcal Electronic energy + Delta-G solvation = -29660.671987 eV Core-core repulsion = 25683.134013 eV Total energy + Delta-G solvation = -3977.537975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.49449 -40.96821 -38.97480 -37.75811 -34.92439 -34.23938 -32.72556 -31.67100 -31.11116 -30.82759 -29.56861 -29.35746 -25.96062 -24.97698 -23.71998 -23.27963 -22.87068 -21.63358 -21.40949 -20.29658 -19.50464 -18.77348 -17.93336 -17.31040 -16.30973 -16.14243 -15.63911 -15.57248 -15.42788 -14.84297 -14.72982 -14.44899 -14.28902 -14.02310 -13.86957 -13.62798 -13.30909 -13.15276 -12.72962 -12.66101 -12.53423 -12.21388 -11.93741 -11.73930 -11.53252 -11.46522 -11.29807 -11.08694 -10.92887 -10.85211 -10.63058 -10.52142 -10.25146 -9.95801 -9.75371 -9.72761 -9.22456 -9.10634 -8.70681 -8.47130 -7.49882 -5.96233 -3.34454 0.02243 1.01069 1.35274 1.79656 2.22871 2.73910 3.01072 3.23953 3.27170 3.34597 3.59501 4.04935 4.14850 4.36448 4.41691 4.46481 4.59221 4.70416 4.83608 4.86340 4.90976 4.95096 5.00669 5.15483 5.22254 5.32025 5.36816 5.44805 5.54424 5.62516 5.69451 5.73174 5.79927 5.85980 5.96522 6.03627 6.05197 6.10876 6.17248 6.27170 6.30190 6.42113 6.48137 6.57864 7.01773 7.60347 7.76563 7.79706 8.16176 8.21931 8.97976 9.70557 9.88030 11.21063 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011889 B = 0.003289 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.532263 B = 8511.848819 C = 9973.439900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 H 0.077 0.923 4 C 0.178 3.822 5 H 0.087 0.913 6 N -0.732 5.732 7 C -0.251 4.251 8 H 0.093 0.907 9 C 0.013 3.987 10 N -0.926 5.926 11 Si 0.878 3.122 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.148 4.148 16 C 0.108 3.892 17 N -0.599 5.599 18 C 0.573 3.427 19 O -0.547 6.547 20 C -0.134 4.134 21 C -0.037 4.037 22 C -0.127 4.127 23 C 0.160 3.840 24 N -0.317 5.317 25 C 0.026 3.974 26 C -0.074 4.074 27 N -0.233 5.233 28 N -0.064 5.064 29 C -0.146 4.146 30 C -0.069 4.069 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.363 0.637 35 H 0.261 0.739 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.198 0.802 43 H 0.191 0.809 44 H 0.139 0.861 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 10.924 10.894 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 H 0.095 0.905 4 C 0.066 3.934 5 H 0.105 0.895 6 N -0.372 5.372 7 C -0.381 4.381 8 H 0.111 0.889 9 C -0.183 4.183 10 N -0.573 5.573 11 Si 0.708 3.292 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.187 4.187 16 C -0.014 4.014 17 N -0.332 5.332 18 C 0.362 3.638 19 O -0.426 6.426 20 C -0.137 4.137 21 C -0.057 4.057 22 C -0.147 4.147 23 C 0.068 3.932 24 N -0.098 5.098 25 C -0.124 4.124 26 C -0.229 4.229 27 N -0.103 5.103 28 N -0.042 5.042 29 C -0.167 4.167 30 C -0.087 4.087 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.197 0.803 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.215 0.785 43 H 0.208 0.792 44 H 0.157 0.843 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.765 10.333 12.686 17.041 hybrid contribution -0.322 -0.951 -0.744 1.250 sum 4.443 9.381 11.942 15.823 Atomic orbital electron populations 1.22659 0.93410 1.06234 1.00321 1.23092 0.96205 0.95577 0.87002 0.90548 1.21194 0.87912 0.92163 0.92175 0.89526 1.42773 1.39498 1.13641 1.41336 1.18993 1.09809 1.00677 1.08606 0.88878 1.24647 0.98088 0.97684 0.97930 1.69676 1.23120 1.36005 1.28452 0.86679 0.77803 0.85976 0.78788 1.20993 1.21592 1.20245 1.23212 0.98610 1.02033 0.94879 1.22217 0.95296 0.88273 0.95581 1.48465 1.51612 1.28280 1.04808 1.17760 0.81283 0.83252 0.81479 1.90761 1.50836 1.55663 1.45343 1.20032 1.01242 0.97643 0.94812 1.21140 0.92964 0.95894 0.95667 1.20812 0.99935 0.94492 0.99444 1.17821 0.92495 0.87797 0.95098 1.48047 1.32385 1.19764 1.09641 1.23655 0.98982 0.90771 0.98964 1.23284 1.05056 1.04657 0.89902 1.74350 1.13014 1.04675 1.18234 1.82129 1.09750 1.12210 1.00065 1.20833 1.00900 1.00909 0.94093 1.22700 0.93777 0.90747 1.01459 0.92885 0.91072 0.89116 0.80307 0.92833 0.90430 0.89338 0.90616 0.91550 0.83679 0.83834 0.78486 0.79184 0.84330 0.80549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 6.98 37.16 0.26 -2.30 16 2 C 0.09 1.18 2.71 -66.95 -0.18 0.99 16 3 H 0.08 0.86 6.17 -51.93 -0.32 0.54 16 4 C 0.18 2.67 3.53 -66.09 -0.23 2.44 16 5 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 6 N -0.73 -14.25 3.35 -51.64 -0.17 -14.42 16 7 C -0.25 -6.02 9.25 -15.06 -0.14 -6.16 16 8 H 0.09 2.38 8.06 -52.49 -0.42 1.96 16 9 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 10 N -0.93 -26.63 13.97 55.49 0.78 -25.85 16 11 Si 0.88 20.34 27.73 -169.99 -4.71 15.62 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.00 6.52 56.52 0.37 -5.63 16 15 C -0.15 -1.87 6.69 -24.58 -0.16 -2.03 16 16 C 0.11 1.49 6.88 -2.53 -0.02 1.47 16 17 N -0.60 -8.56 3.06 -164.17 -0.50 -9.06 16 18 C 0.57 8.74 7.61 -12.40 -0.09 8.65 16 19 O -0.55 -9.80 16.69 5.30 0.09 -9.71 16 20 C -0.13 -1.73 5.07 -104.95 -0.53 -2.26 16 21 C -0.04 -0.45 9.58 -39.22 -0.38 -0.82 16 22 C -0.13 -1.43 9.66 -39.47 -0.38 -1.82 16 23 C 0.16 1.78 6.70 -83.57 -0.56 1.22 16 24 N -0.32 -3.56 3.85 -10.50 -0.04 -3.60 16 25 C 0.03 0.22 10.92 -16.73 -0.18 0.04 16 26 C -0.07 -0.66 11.86 -18.04 -0.21 -0.87 16 27 N -0.23 -2.92 12.33 30.09 0.37 -2.55 16 28 N -0.06 -0.85 13.15 60.35 0.79 -0.05 16 29 C -0.15 -1.43 9.46 -39.47 -0.37 -1.81 16 30 C -0.07 -0.76 6.21 -39.22 -0.24 -1.00 16 31 H 0.05 0.75 4.24 -51.93 -0.22 0.53 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.71 6.19 -51.93 -0.32 1.39 16 34 H 0.36 7.29 5.71 -40.82 -0.23 7.05 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.00 7.98 -51.93 -0.41 0.59 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.15 1.67 7.74 -52.49 -0.41 1.26 16 41 H 0.14 1.53 7.72 -52.48 -0.41 1.12 16 42 H 0.20 0.84 7.16 -52.49 -0.38 0.46 16 43 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.14 0.96 6.82 -52.49 -0.36 0.61 16 45 H 0.18 1.86 2.60 -52.49 -0.14 1.73 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -31.93 360.88 -6.81 -38.74 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.32 Total: 9.45 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -3.53 Total: -4.01 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 1.22 Total: -55.54 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.71 Total: 15.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.93 -6.81 -38.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987331202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.049 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds