Wall clock time and date at job start Sat Apr 11 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.99630 * 2 1 4 4 C 1.54338 * 109.98762 * 238.96407 * 2 1 3 5 5 H 1.09003 * 110.84896 * 100.20141 * 4 2 1 6 6 N 1.46497 * 110.66722 * 337.04729 * 4 2 1 7 7 C 1.36938 * 120.00045 * 95.94530 * 6 4 2 8 8 H 1.07995 * 119.99789 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99812 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99797 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00093 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47195 * 90.00140 * 11 9 7 13 13 H 1.48501 * 109.47037 * 210.00343 * 11 9 7 14 14 H 1.48503 * 109.47296 * 329.99965 * 11 9 7 15 15 C 1.55159 * 103.01501 * 218.66319 * 4 2 1 16 16 C 1.54906 * 101.58241 * 35.30828 * 15 4 2 17 17 N 1.47016 * 109.88165 * 121.09682 * 2 1 3 18 18 C 1.34780 * 125.64832 * 298.39411 * 17 2 1 19 19 O 1.21572 * 119.99708 * 186.03320 * 18 17 2 20 20 C 1.47692 * 119.99922 * 6.02557 * 18 17 2 21 21 C 1.39694 * 120.07408 * 163.20804 * 20 18 17 22 22 C 1.37745 * 119.91483 * 180.02562 * 21 20 18 23 23 C 1.39028 * 120.08107 * 0.02562 * 22 21 20 24 24 N 1.39935 * 119.91942 * 179.97438 * 23 22 21 25 25 C 1.36311 * 126.86416 * 179.97438 * 24 23 22 26 26 C 1.34960 * 106.77885 * 179.74264 * 25 24 23 27 27 N 1.33379 * 109.01498 * 0.02562 * 26 25 24 28 28 N 1.28763 * 109.92530 * 359.97438 * 27 26 25 29 29 C 1.39028 * 120.15838 * 0.25386 * 23 22 21 30 30 C 1.37742 * 120.08039 * 359.48697 * 29 23 22 31 31 H 1.08999 * 109.47115 * 283.48987 * 1 2 3 32 32 H 1.09000 * 109.47298 * 43.48461 * 1 2 3 33 33 H 1.09001 * 109.47006 * 163.48786 * 1 2 3 34 34 H 0.96995 * 119.99771 * 275.93617 * 6 4 2 35 35 H 0.96994 * 120.00176 * 180.02562 * 10 9 7 36 36 H 1.08995 * 111.00658 * 277.23016 * 15 4 2 37 37 H 1.08999 * 111.00037 * 153.38279 * 15 4 2 38 38 H 1.08996 * 110.36695 * 204.14970 * 16 15 4 39 39 H 1.09007 * 110.36944 * 81.82527 * 16 15 4 40 40 H 1.07997 * 120.04362 * 0.04912 * 21 20 18 41 41 H 1.08003 * 119.95802 * 179.97438 * 22 21 20 42 42 H 1.07997 * 126.60810 * 359.74486 * 25 24 23 43 43 H 1.07998 * 125.49538 * 180.02562 * 26 25 24 44 44 H 1.07997 * 119.95929 * 179.72947 * 29 23 22 45 45 H 1.07994 * 120.04146 * 180.26029 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 2.3598 -0.0449 -2.0192 6 7 1.0482 -1.6788 -1.7532 7 6 0.2209 -1.2985 -2.7760 8 1 0.3124 -0.3121 -3.2061 9 6 -0.7352 -2.1808 -3.2600 10 7 -1.5306 -1.8151 -4.2428 11 14 -0.8928 -3.8872 -2.5165 12 1 -1.8585 -3.8486 -1.3891 13 1 -1.3778 -4.8352 -3.5516 14 1 0.4326 -4.3343 -2.0179 15 6 3.2864 -1.5183 -0.6915 16 6 2.8099 -1.8825 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.8074 -0.3620 2.4657 19 8 2.3608 -0.9631 3.3660 20 6 0.8913 0.7540 2.7765 21 6 0.3831 0.9032 4.0692 22 6 -0.4714 1.9449 4.3554 23 6 -0.8287 2.8468 3.3595 24 7 -1.6975 3.9035 3.6538 25 6 -2.1386 4.8637 2.7926 26 6 -2.9584 5.6719 3.4969 27 7 -3.0268 5.2325 4.7543 28 7 -2.2933 4.1834 4.8930 29 6 -0.3295 2.6979 2.0705 30 6 0.5297 1.6618 1.7783 31 1 -0.3633 0.2397 0.9993 32 1 -0.3634 0.7456 -0.7072 33 1 -0.3633 -0.9853 -0.2921 34 1 0.9659 -2.5646 -1.3667 35 1 -2.1989 -2.4315 -4.5808 36 1 4.1669 -0.8769 -0.6580 37 1 3.4807 -2.4155 -1.2792 38 1 3.6655 -2.0411 1.3931 39 1 2.1801 -2.7718 0.7115 40 1 0.6602 0.2029 4.8433 41 1 -0.8650 2.0607 5.3544 42 1 -1.8815 4.9591 1.7480 43 1 -3.4758 6.5353 3.1054 44 1 -0.6126 3.3979 1.2983 45 1 0.9205 1.5492 0.7778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987331202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:29 Heat of formation + Delta-G solvation = 142.884100 kcal Electronic energy + Delta-G solvation = -29661.557686 eV Core-core repulsion = 25683.134013 eV Total energy + Delta-G solvation = -3978.423674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.26191 -42.03747 -39.95239 -38.98691 -35.98898 -35.64345 -33.79258 -33.27270 -31.94563 -31.72373 -30.85531 -30.40955 -27.19102 -25.93756 -24.95875 -24.57593 -23.86950 -22.52275 -22.23773 -21.55394 -20.54474 -19.76338 -19.50724 -18.43299 -17.48639 -16.94142 -16.78669 -16.48781 -16.38717 -16.18733 -15.82211 -15.63830 -15.28153 -15.15154 -14.98158 -14.66885 -14.58609 -14.29100 -14.10055 -13.73614 -13.65756 -13.42749 -13.10322 -12.97273 -12.78549 -12.47594 -12.40577 -12.30243 -12.22230 -12.06647 -11.84528 -11.73985 -11.71311 -11.58629 -11.17439 -10.89655 -10.46433 -10.08129 -9.77262 -9.48804 -9.24392 -7.96106 -5.27756 -0.83530 0.15564 0.51218 1.04494 1.38993 1.40769 1.47322 1.51946 1.69398 1.92562 2.51335 2.64300 3.24841 3.32055 3.35064 3.50577 3.57630 3.67388 3.78331 3.82118 3.88280 4.01991 4.11379 4.16906 4.24425 4.29538 4.33921 4.40412 4.51264 4.56457 4.73186 4.80001 4.82822 4.91991 4.98293 5.06002 5.07818 5.12448 5.20749 5.22604 5.26873 5.34946 5.39928 5.70351 5.77774 5.87824 6.27570 6.46473 7.00873 7.02764 7.13559 7.89198 8.05256 9.24616 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011889 B = 0.003289 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.532263 B = 8511.848819 C = 9973.439900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.095 3.905 3 H 0.114 0.886 4 C 0.167 3.833 5 H 0.098 0.902 6 N -0.736 5.736 7 C -0.205 4.205 8 H 0.077 0.923 9 C -0.054 4.054 10 N -0.979 5.979 11 Si 0.929 3.071 12 H -0.291 1.291 13 H -0.305 1.305 14 H -0.253 1.253 15 C -0.132 4.132 16 C 0.103 3.897 17 N -0.599 5.599 18 C 0.569 3.431 19 O -0.582 6.582 20 C -0.150 4.150 21 C -0.042 4.042 22 C -0.131 4.131 23 C 0.157 3.843 24 N -0.325 5.325 25 C 0.039 3.961 26 C -0.078 4.078 27 N -0.262 5.262 28 N -0.110 5.110 29 C -0.133 4.133 30 C -0.066 4.066 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.362 0.638 35 H 0.253 0.747 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.243 0.757 43 H 0.226 0.774 44 H 0.176 0.824 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 12.766 10.556 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.010 4.010 3 H 0.131 0.869 4 C 0.057 3.943 5 H 0.115 0.885 6 N -0.376 5.376 7 C -0.336 4.336 8 H 0.095 0.905 9 C -0.245 4.245 10 N -0.630 5.630 11 Si 0.759 3.241 12 H -0.219 1.219 13 H -0.233 1.233 14 H -0.178 1.178 15 C -0.171 4.171 16 C -0.019 4.019 17 N -0.330 5.330 18 C 0.360 3.640 19 O -0.464 6.464 20 C -0.154 4.154 21 C -0.062 4.062 22 C -0.152 4.152 23 C 0.065 3.935 24 N -0.107 5.107 25 C -0.111 4.111 26 C -0.233 4.233 27 N -0.130 5.130 28 N -0.086 5.086 29 C -0.154 4.154 30 C -0.084 4.084 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.195 0.805 35 H 0.062 0.938 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.259 0.741 43 H 0.242 0.758 44 H 0.194 0.806 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.096 12.185 12.409 18.429 hybrid contribution -0.683 -1.352 -0.596 1.628 sum 5.413 10.832 11.813 16.917 Atomic orbital electron populations 1.22586 0.94585 1.03968 1.00973 1.23014 0.95112 0.97059 0.85810 0.86857 1.21501 0.87780 0.92066 0.92947 0.88460 1.42800 1.39935 1.14439 1.40472 1.18987 1.08159 0.99109 1.07325 0.90518 1.25201 0.99197 1.00891 0.99244 1.69815 1.24957 1.37018 1.31187 0.85813 0.78457 0.82597 0.77249 1.21853 1.23277 1.17785 1.23143 0.98258 1.02269 0.93436 1.22287 0.95257 0.87817 0.96512 1.48521 1.51371 1.28352 1.04780 1.18117 0.81122 0.83465 0.81269 1.90738 1.52292 1.57065 1.46260 1.19963 1.01851 0.97885 0.95677 1.21116 0.93321 0.96173 0.95558 1.20839 0.99862 0.94580 0.99873 1.17992 0.92353 0.87663 0.95540 1.48162 1.32404 1.20248 1.09885 1.24501 0.97292 0.88946 1.00334 1.23993 1.05036 1.05559 0.88756 1.74325 1.13431 1.04965 1.20319 1.82126 1.11619 1.13421 1.01474 1.21160 0.99355 1.00676 0.94189 1.22722 0.93915 0.90630 1.01099 0.91830 0.90782 0.92952 0.80542 0.93763 0.87503 0.89220 0.90087 0.92852 0.84121 0.83943 0.74059 0.75802 0.80632 0.79791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 6.98 71.98 0.50 -4.09 16 2 C 0.09 2.27 2.71 45.35 0.12 2.39 16 3 H 0.11 1.99 6.17 -2.39 -0.01 1.97 16 4 C 0.17 4.50 3.53 46.19 0.16 4.67 16 5 H 0.10 2.49 8.06 -2.39 -0.02 2.48 16 6 N -0.74 -27.28 3.35 -317.30 -1.06 -28.34 16 7 C -0.20 -9.61 9.25 84.03 0.78 -8.83 16 8 H 0.08 3.85 8.06 -2.91 -0.02 3.83 16 9 C -0.05 -2.82 5.50 84.86 0.47 -2.36 16 10 N -0.98 -57.47 13.97 21.65 0.30 -57.17 16 11 Si 0.93 42.33 27.73 68.60 1.90 44.23 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.31 -14.59 7.11 99.48 0.71 -13.89 16 14 H -0.25 -10.35 6.52 99.48 0.65 -9.71 16 15 C -0.13 -2.88 6.69 31.99 0.21 -2.67 16 16 C 0.10 2.62 6.88 86.85 0.60 3.22 16 17 N -0.60 -15.81 3.06 -791.58 -2.43 -18.24 16 18 C 0.57 16.68 7.61 86.74 0.66 17.34 16 19 O -0.58 -20.69 16.69 -3.94 -0.07 -20.76 16 20 C -0.15 -3.66 5.07 -20.08 -0.10 -3.76 16 21 C -0.04 -0.99 9.58 22.51 0.22 -0.78 16 22 C -0.13 -2.89 9.66 22.34 0.22 -2.67 16 23 C 0.16 3.14 6.70 38.23 0.26 3.39 16 24 N -0.33 -6.59 3.85 -187.13 -0.72 -7.31 16 25 C 0.04 0.50 10.92 83.24 0.91 1.41 16 26 C -0.08 -1.16 11.86 83.70 0.99 -0.17 16 27 N -0.26 -6.29 12.33 -58.72 -0.72 -7.02 16 28 N -0.11 -2.85 13.15 37.02 0.49 -2.36 16 29 C -0.13 -2.10 9.46 22.34 0.21 -1.89 16 30 C -0.07 -1.24 6.21 22.50 0.14 -1.10 16 31 H 0.06 1.66 4.24 -2.39 -0.01 1.65 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 1.91 6.19 -2.39 -0.01 1.89 16 34 H 0.36 13.85 5.71 -92.71 -0.53 13.32 16 35 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.08 1.99 7.98 -2.39 -0.02 1.97 16 39 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.14 3.34 7.74 -2.91 -0.02 3.32 16 41 H 0.14 3.10 7.72 -2.91 -0.02 3.07 16 42 H 0.24 0.60 7.16 -2.91 -0.02 0.58 16 43 H 0.23 1.46 8.06 -2.91 -0.02 1.44 16 44 H 0.18 1.41 6.82 -2.91 -0.02 1.39 16 45 H 0.19 3.12 2.60 -2.91 -0.01 3.11 16 Total: -1.00 -72.72 360.88 4.50 -68.22 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.47 Total: 24.65 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 6.34 Total: 4.09 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -4.14 Total: -120.43 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.07 Total: -20.76 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.90 Total: 44.23 kcal Total: -72.72 4.50 -68.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987331202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.101 kcal (2) G-P(sol) polarization free energy of solvation -72.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds