Wall clock time and date at job start Sat Apr 11 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.87290 * 2 1 4 4 C 1.54372 * 110.03031 * 121.06584 * 2 1 3 5 5 H 1.09005 * 110.75582 * 260.01858 * 4 2 1 6 6 N 1.46496 * 110.70391 * 23.30795 * 4 2 1 7 7 C 1.36944 * 119.99768 * 235.94171 * 6 4 2 8 8 H 1.07995 * 120.00031 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99839 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99875 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99772 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46806 * 60.00517 * 11 9 7 13 13 H 1.48506 * 109.46884 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47508 * 300.00188 * 11 9 7 15 15 C 1.55162 * 102.92056 * 141.65240 * 4 2 1 16 16 C 1.54911 * 101.61573 * 324.54498 * 15 4 2 17 17 N 1.47023 * 109.88561 * 238.98589 * 2 1 3 18 18 C 1.34776 * 125.64833 * 61.52192 * 17 2 1 19 19 O 1.21573 * 119.99705 * 172.77651 * 18 17 2 20 20 C 1.47691 * 119.99879 * 352.76791 * 18 17 2 21 21 C 1.39689 * 120.07822 * 17.20257 * 20 18 17 22 22 C 1.37746 * 119.92017 * 179.69339 * 21 20 18 23 23 C 1.39026 * 120.07440 * 0.57713 * 22 21 20 24 24 N 1.39934 * 119.92064 * 179.69985 * 23 22 21 25 25 C 1.36322 * 126.86183 * 359.72382 * 24 23 22 26 26 C 1.34968 * 106.77513 * 179.90782 * 25 24 23 27 27 N 1.33374 * 109.01686 * 0.37164 * 26 25 24 28 28 N 1.28766 * 109.92636 * 359.76658 * 27 26 25 29 29 C 1.39024 * 120.16211 * 359.71863 * 23 22 21 30 30 C 1.37743 * 120.08222 * 359.97438 * 29 23 22 31 31 H 1.09000 * 109.46840 * 203.80316 * 1 2 3 32 32 H 1.08992 * 109.47107 * 323.80314 * 1 2 3 33 33 H 1.09000 * 109.46760 * 83.80639 * 1 2 3 34 34 H 0.96994 * 120.00416 * 55.94487 * 6 4 2 35 35 H 0.97002 * 119.99999 * 180.02562 * 10 9 7 36 36 H 1.09002 * 110.99915 * 206.45609 * 15 4 2 37 37 H 1.08999 * 111.00675 * 82.63908 * 15 4 2 38 38 H 1.08995 * 110.36541 * 155.83177 * 16 15 4 39 39 H 1.09000 * 110.36885 * 278.04619 * 16 15 4 40 40 H 1.08010 * 120.04316 * 359.97123 * 21 20 18 41 41 H 1.07994 * 119.96123 * 180.29324 * 22 21 20 42 42 H 1.07992 * 126.61111 * 0.04659 * 25 24 23 43 43 H 1.07998 * 125.48802 * 180.13651 * 26 25 24 44 44 H 1.08005 * 119.96136 * 179.97438 * 29 23 22 45 45 H 1.07999 * 120.04299 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0588 -0.7484 1.2423 5 1 2.3571 -0.0446 2.0194 6 7 1.0538 -1.6864 1.7486 7 6 0.6342 -1.6040 3.0496 8 1 1.0439 -0.8474 3.7022 9 6 -0.3185 -2.4925 3.5291 10 7 -0.8181 -3.4143 2.7336 11 14 -0.8913 -2.3797 5.3036 12 1 -1.4927 -1.0437 5.5455 13 1 -1.9043 -3.4338 5.5646 14 1 0.2681 -2.5724 6.2112 15 6 3.2919 -1.5107 0.6894 16 6 2.8178 -1.8763 -0.7394 17 7 2.0301 -0.7124 -1.1849 18 6 1.8062 -0.3594 -2.4662 19 8 2.3763 -0.9447 -3.3664 20 6 0.8681 0.7383 -2.7767 21 6 0.4905 1.6397 -1.7786 22 6 -0.3797 2.6661 -2.0733 23 6 -0.8913 2.7981 -3.3592 24 7 -1.7800 3.8382 -3.6535 25 6 -2.2390 4.7900 -2.7921 26 6 -3.0681 5.5872 -3.4983 27 7 -3.1315 5.1441 -4.7547 28 7 -2.3818 4.1063 -4.8924 29 6 -0.5225 1.8991 -4.3535 30 6 0.3521 0.8741 -4.0677 31 1 -0.3633 -0.9403 0.4148 32 1 -0.3633 0.8293 0.6069 33 1 -0.3633 0.1109 -1.0217 34 1 0.6855 -2.3658 1.1624 35 1 -1.4841 -4.0349 3.0686 36 1 3.4921 -2.4074 1.2759 37 1 4.1687 -0.8639 0.6565 38 1 3.6743 -2.0285 -1.3960 39 1 2.1954 -2.7708 -0.7153 40 1 0.8838 1.5349 -0.7782 41 1 -0.6684 3.3662 -1.3034 42 1 -1.9860 4.8885 -1.7469 43 1 -3.5980 6.4434 -3.1078 44 1 -0.9223 2.0045 -5.3513 45 1 0.6379 0.1759 -4.8404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987331207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:35 Heat of formation + Delta-G solvation = 159.475350 kcal Electronic energy + Delta-G solvation = -29461.483002 eV Core-core repulsion = 25483.778779 eV Total energy + Delta-G solvation = -3977.704223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.50113 -40.91249 -38.91144 -37.65212 -34.90550 -34.12541 -32.65016 -31.56493 -31.10489 -30.78686 -29.49674 -28.94509 -25.75369 -24.92851 -23.77223 -23.63934 -22.84647 -21.60125 -21.39567 -20.07910 -19.44576 -18.76492 -17.76619 -17.09009 -16.26429 -16.14821 -15.62628 -15.48196 -15.36303 -14.84685 -14.67712 -14.44223 -14.20500 -14.03612 -13.63632 -13.55156 -13.28857 -13.20053 -12.71975 -12.51945 -12.43612 -12.21398 -11.80564 -11.53477 -11.40431 -11.35464 -11.19893 -11.05200 -10.90122 -10.75242 -10.65668 -10.45642 -10.26915 -9.89719 -9.75381 -9.73761 -9.23301 -9.09861 -8.68545 -8.40277 -7.19993 -5.96019 -3.27224 0.02925 1.02023 1.35814 1.79055 2.21650 2.77757 3.08363 3.31553 3.36915 3.38686 3.62058 4.04736 4.13518 4.41028 4.41986 4.46919 4.60008 4.69868 4.86922 4.91482 4.96642 5.06796 5.16450 5.22785 5.28338 5.41427 5.47559 5.55695 5.65058 5.65748 5.71867 5.78153 5.93300 5.96229 6.00655 6.04764 6.12196 6.18319 6.22164 6.30675 6.45551 6.53721 6.59092 6.61355 7.02227 7.51587 7.68273 7.78863 8.20067 8.22992 9.32633 9.84356 10.19222 11.25202 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011468 B = 0.003072 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.987321 B = 9113.716092 C =10939.955231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.093 3.907 3 H 0.076 0.924 4 C 0.173 3.827 5 H 0.085 0.915 6 N -0.704 5.704 7 C -0.253 4.253 8 H 0.073 0.927 9 C -0.005 4.005 10 N -0.927 5.927 11 Si 0.908 3.092 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.110 3.890 17 N -0.598 5.598 18 C 0.572 3.428 19 O -0.546 6.546 20 C -0.130 4.130 21 C -0.071 4.071 22 C -0.146 4.146 23 C 0.158 3.842 24 N -0.316 5.316 25 C 0.025 3.975 26 C -0.074 4.074 27 N -0.233 5.233 28 N -0.063 5.063 29 C -0.125 4.125 30 C -0.038 4.038 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.388 0.612 35 H 0.258 0.742 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.178 0.822 41 H 0.138 0.862 42 H 0.198 0.802 43 H 0.191 0.809 44 H 0.144 0.856 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 14.491 -7.843 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.013 4.013 3 H 0.093 0.907 4 C 0.059 3.941 5 H 0.103 0.897 6 N -0.343 5.343 7 C -0.383 4.383 8 H 0.091 0.909 9 C -0.202 4.202 10 N -0.574 5.574 11 Si 0.738 3.262 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.012 4.012 17 N -0.330 5.330 18 C 0.361 3.639 19 O -0.425 6.425 20 C -0.134 4.134 21 C -0.090 4.090 22 C -0.167 4.167 23 C 0.066 3.934 24 N -0.098 5.098 25 C -0.125 4.125 26 C -0.229 4.229 27 N -0.103 5.103 28 N -0.041 5.041 29 C -0.145 4.145 30 C -0.057 4.057 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.223 0.777 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.194 0.806 41 H 0.155 0.845 42 H 0.214 0.786 43 H 0.208 0.792 44 H 0.162 0.838 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.229 13.790 -9.659 16.983 hybrid contribution -0.514 0.117 1.950 2.020 sum 1.715 13.907 -7.709 15.992 Atomic orbital electron populations 1.22753 0.93807 1.06169 1.00875 1.22876 0.95764 0.95542 0.87107 0.90713 1.21221 0.88762 0.92096 0.92014 0.89721 1.42435 1.45136 1.35878 1.10849 1.19215 1.18430 1.13285 0.87419 0.90895 1.24765 0.99419 0.97964 0.98093 1.69642 1.32190 1.20485 1.35076 0.86273 0.78219 0.77132 0.84531 1.21151 1.21683 1.21158 1.23457 0.98945 1.02276 0.94972 1.22227 0.95057 0.88267 0.95626 1.48458 1.51345 1.28630 1.04618 1.17737 0.81595 0.83026 0.81557 1.90763 1.50617 1.55813 1.45327 1.20068 1.00752 0.97816 0.94760 1.22725 0.93955 0.90831 1.01444 1.20813 1.00843 1.00926 0.94116 1.17813 0.92180 0.88261 0.95163 1.48053 1.31577 1.20518 1.09611 1.23641 0.98852 0.91058 0.98929 1.23278 1.05014 1.04723 0.89909 1.74351 1.13020 1.04681 1.18245 1.82136 1.09298 1.12576 1.00083 1.20818 0.99684 0.94614 0.99429 1.21155 0.92915 0.95920 0.95714 0.88126 0.91892 0.92630 0.77716 0.93169 0.89309 0.91481 0.91013 0.91096 0.80576 0.84456 0.78554 0.79220 0.83823 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 7.52 37.16 0.28 -2.40 16 2 C 0.09 1.29 2.72 -66.93 -0.18 1.11 16 3 H 0.08 0.86 6.25 -51.93 -0.32 0.53 16 4 C 0.17 2.76 3.59 -66.07 -0.24 2.53 16 5 H 0.08 1.30 7.85 -51.93 -0.41 0.89 16 6 N -0.70 -14.75 3.34 -51.62 -0.17 -14.92 16 7 C -0.25 -6.06 9.94 -15.05 -0.15 -6.21 16 8 H 0.07 1.68 7.68 -52.49 -0.40 1.28 16 9 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 10 N -0.93 -25.62 13.06 55.49 0.72 -24.89 16 11 Si 0.91 20.50 29.55 -169.99 -5.02 15.48 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 15 C -0.16 -2.23 6.77 -24.58 -0.17 -2.40 16 16 C 0.11 1.67 6.92 -2.53 -0.02 1.65 16 17 N -0.60 -8.99 3.07 -164.14 -0.50 -9.49 16 18 C 0.57 9.03 7.58 -12.40 -0.09 8.94 16 19 O -0.55 -10.13 16.70 5.30 0.09 -10.04 16 20 C -0.13 -1.72 5.00 -104.95 -0.52 -2.24 16 21 C -0.07 -0.79 6.28 -39.22 -0.25 -1.04 16 22 C -0.15 -1.41 9.46 -39.47 -0.37 -1.78 16 23 C 0.16 1.74 6.70 -83.58 -0.56 1.18 16 24 N -0.32 -3.51 3.85 -10.50 -0.04 -3.55 16 25 C 0.03 0.20 10.92 -16.72 -0.18 0.02 16 26 C -0.07 -0.65 11.86 -18.04 -0.21 -0.86 16 27 N -0.23 -2.89 12.33 30.09 0.37 -2.52 16 28 N -0.06 -0.83 13.15 60.35 0.79 -0.04 16 29 C -0.13 -1.42 9.66 -39.47 -0.38 -1.81 16 30 C -0.04 -0.46 9.58 -39.22 -0.38 -0.83 16 31 H 0.10 1.95 5.78 -51.93 -0.30 1.65 16 32 H 0.06 0.86 8.01 -51.93 -0.42 0.44 16 33 H 0.06 0.80 4.50 -51.93 -0.23 0.56 16 34 H 0.39 9.00 7.27 -40.82 -0.30 8.70 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.05 7.97 -51.93 -0.41 0.64 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.18 1.86 2.51 -52.48 -0.13 1.73 16 41 H 0.14 0.91 6.82 -52.49 -0.36 0.55 16 42 H 0.20 0.77 7.16 -52.49 -0.38 0.40 16 43 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.14 1.53 7.72 -52.48 -0.41 1.13 16 45 H 0.15 1.71 7.75 -52.49 -0.41 1.30 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -30.91 364.44 -7.09 -38.00 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.30 Total: 10.85 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -3.52 Total: -4.37 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 1.17 Total: -55.41 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.91 -7.09 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987331207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.480 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds