Wall clock time and date at job start Sat Apr 11 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.87290 * 2 1 4 4 C 1.54372 * 110.03031 * 121.06584 * 2 1 3 5 5 H 1.09005 * 110.75582 * 260.01858 * 4 2 1 6 6 N 1.46496 * 110.70391 * 23.30795 * 4 2 1 7 7 C 1.36944 * 119.99768 * 235.94171 * 6 4 2 8 8 H 1.07995 * 120.00031 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99839 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99875 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99772 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46806 * 60.00517 * 11 9 7 13 13 H 1.48506 * 109.46884 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47508 * 300.00188 * 11 9 7 15 15 C 1.55162 * 102.92056 * 141.65240 * 4 2 1 16 16 C 1.54911 * 101.61573 * 324.54498 * 15 4 2 17 17 N 1.47023 * 109.88561 * 238.98589 * 2 1 3 18 18 C 1.34776 * 125.64833 * 61.52192 * 17 2 1 19 19 O 1.21573 * 119.99705 * 172.77651 * 18 17 2 20 20 C 1.47691 * 119.99879 * 352.76791 * 18 17 2 21 21 C 1.39689 * 120.07822 * 17.20257 * 20 18 17 22 22 C 1.37746 * 119.92017 * 179.69339 * 21 20 18 23 23 C 1.39026 * 120.07440 * 0.57713 * 22 21 20 24 24 N 1.39934 * 119.92064 * 179.69985 * 23 22 21 25 25 C 1.36322 * 126.86183 * 359.72382 * 24 23 22 26 26 C 1.34968 * 106.77513 * 179.90782 * 25 24 23 27 27 N 1.33374 * 109.01686 * 0.37164 * 26 25 24 28 28 N 1.28766 * 109.92636 * 359.76658 * 27 26 25 29 29 C 1.39024 * 120.16211 * 359.71863 * 23 22 21 30 30 C 1.37743 * 120.08222 * 359.97438 * 29 23 22 31 31 H 1.09000 * 109.46840 * 203.80316 * 1 2 3 32 32 H 1.08992 * 109.47107 * 323.80314 * 1 2 3 33 33 H 1.09000 * 109.46760 * 83.80639 * 1 2 3 34 34 H 0.96994 * 120.00416 * 55.94487 * 6 4 2 35 35 H 0.97002 * 119.99999 * 180.02562 * 10 9 7 36 36 H 1.09002 * 110.99915 * 206.45609 * 15 4 2 37 37 H 1.08999 * 111.00675 * 82.63908 * 15 4 2 38 38 H 1.08995 * 110.36541 * 155.83177 * 16 15 4 39 39 H 1.09000 * 110.36885 * 278.04619 * 16 15 4 40 40 H 1.08010 * 120.04316 * 359.97123 * 21 20 18 41 41 H 1.07994 * 119.96123 * 180.29324 * 22 21 20 42 42 H 1.07992 * 126.61111 * 0.04659 * 25 24 23 43 43 H 1.07998 * 125.48802 * 180.13651 * 26 25 24 44 44 H 1.08005 * 119.96136 * 179.97438 * 29 23 22 45 45 H 1.07999 * 120.04299 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0588 -0.7484 1.2423 5 1 2.3571 -0.0446 2.0194 6 7 1.0538 -1.6864 1.7486 7 6 0.6342 -1.6040 3.0496 8 1 1.0439 -0.8474 3.7022 9 6 -0.3185 -2.4925 3.5291 10 7 -0.8181 -3.4143 2.7336 11 14 -0.8913 -2.3797 5.3036 12 1 -1.4927 -1.0437 5.5455 13 1 -1.9043 -3.4338 5.5646 14 1 0.2681 -2.5724 6.2112 15 6 3.2919 -1.5107 0.6894 16 6 2.8178 -1.8763 -0.7394 17 7 2.0301 -0.7124 -1.1849 18 6 1.8062 -0.3594 -2.4662 19 8 2.3763 -0.9447 -3.3664 20 6 0.8681 0.7383 -2.7767 21 6 0.4905 1.6397 -1.7786 22 6 -0.3797 2.6661 -2.0733 23 6 -0.8913 2.7981 -3.3592 24 7 -1.7800 3.8382 -3.6535 25 6 -2.2390 4.7900 -2.7921 26 6 -3.0681 5.5872 -3.4983 27 7 -3.1315 5.1441 -4.7547 28 7 -2.3818 4.1063 -4.8924 29 6 -0.5225 1.8991 -4.3535 30 6 0.3521 0.8741 -4.0677 31 1 -0.3633 -0.9403 0.4148 32 1 -0.3633 0.8293 0.6069 33 1 -0.3633 0.1109 -1.0217 34 1 0.6855 -2.3658 1.1624 35 1 -1.4841 -4.0349 3.0686 36 1 3.4921 -2.4074 1.2759 37 1 4.1687 -0.8639 0.6565 38 1 3.6743 -2.0285 -1.3960 39 1 2.1954 -2.7708 -0.7153 40 1 0.8838 1.5349 -0.7782 41 1 -0.6684 3.3662 -1.3034 42 1 -1.9860 4.8885 -1.7469 43 1 -3.5980 6.4434 -3.1078 44 1 -0.9223 2.0045 -5.3513 45 1 0.6379 0.1759 -4.8404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987331207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:34 Heat of formation + Delta-G solvation = 140.315842 kcal Electronic energy + Delta-G solvation = -29462.313821 eV Core-core repulsion = 25483.778779 eV Total energy + Delta-G solvation = -3978.535042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.24873 -42.01541 -39.90965 -38.93362 -35.93549 -35.58781 -33.71285 -33.10943 -31.91517 -31.68221 -30.59942 -30.28638 -27.02055 -25.91697 -25.43286 -24.54994 -23.85317 -22.50743 -22.20916 -21.36246 -20.52221 -19.64701 -19.30445 -18.34377 -17.49885 -16.92829 -16.70344 -16.46476 -16.39284 -16.21931 -15.64893 -15.56626 -15.34585 -15.04776 -14.97391 -14.67681 -14.59055 -14.23045 -13.87527 -13.69324 -13.57783 -13.08319 -12.99209 -12.93388 -12.71413 -12.45099 -12.33036 -12.28601 -12.25713 -12.12820 -11.96739 -11.77772 -11.68780 -11.43676 -11.09381 -10.85662 -10.45229 -10.09159 -9.75824 -9.47371 -8.95507 -7.87954 -5.15710 -0.82237 0.16970 0.52597 1.05672 1.53204 1.54596 1.55621 1.61239 1.69815 1.93847 2.61370 2.65527 3.26406 3.34417 3.43121 3.53125 3.66186 3.79880 3.87077 3.90040 3.93516 4.05607 4.12656 4.19112 4.26762 4.33473 4.36607 4.41648 4.53722 4.60983 4.73995 4.82496 4.84314 4.93422 4.98147 5.07033 5.08724 5.12811 5.23102 5.25481 5.33753 5.36433 5.41177 5.62463 5.73435 5.79239 6.31689 6.49107 7.01577 7.04180 7.40095 8.12833 8.35302 9.34590 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011468 B = 0.003072 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.987321 B = 9113.716092 C =10939.955231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 H 0.118 0.882 4 C 0.163 3.837 5 H 0.103 0.897 6 N -0.714 5.714 7 C -0.231 4.231 8 H 0.088 0.912 9 C -0.071 4.071 10 N -0.970 5.970 11 Si 0.964 3.036 12 H -0.275 1.275 13 H -0.308 1.308 14 H -0.281 1.281 15 C -0.142 4.142 16 C 0.109 3.891 17 N -0.598 5.598 18 C 0.567 3.433 19 O -0.584 6.584 20 C -0.148 4.148 21 C -0.066 4.066 22 C -0.130 4.130 23 C 0.157 3.843 24 N -0.325 5.325 25 C 0.040 3.960 26 C -0.078 4.078 27 N -0.263 5.263 28 N -0.111 5.111 29 C -0.131 4.131 30 C -0.044 4.044 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.373 0.627 35 H 0.247 0.753 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.187 0.813 41 H 0.180 0.820 42 H 0.245 0.755 43 H 0.226 0.774 44 H 0.142 0.858 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 18.117 -5.936 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 H 0.135 0.865 4 C 0.052 3.948 5 H 0.121 0.879 6 N -0.352 5.352 7 C -0.362 4.362 8 H 0.106 0.894 9 C -0.264 4.264 10 N -0.620 5.620 11 Si 0.795 3.205 12 H -0.201 1.201 13 H -0.236 1.236 14 H -0.207 1.207 15 C -0.182 4.182 16 C -0.014 4.014 17 N -0.330 5.330 18 C 0.358 3.642 19 O -0.466 6.466 20 C -0.152 4.152 21 C -0.084 4.084 22 C -0.151 4.151 23 C 0.064 3.936 24 N -0.107 5.107 25 C -0.110 4.110 26 C -0.234 4.234 27 N -0.131 5.131 28 N -0.088 5.088 29 C -0.151 4.151 30 C -0.064 4.064 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.205 0.795 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.204 0.796 41 H 0.197 0.803 42 H 0.261 0.739 43 H 0.242 0.758 44 H 0.160 0.840 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.770 17.475 -7.762 19.320 hybrid contribution -0.645 -0.881 1.314 1.709 sum 2.125 16.593 -6.448 17.928 Atomic orbital electron populations 1.22659 0.94454 1.04471 1.01266 1.22875 0.95127 0.96979 0.85409 0.86479 1.21526 0.88102 0.91789 0.93342 0.87909 1.42569 1.46175 1.36579 1.09834 1.19658 1.16275 1.11757 0.88537 0.89413 1.25435 1.00999 0.98781 1.01169 1.69809 1.33624 1.22064 1.36519 0.85350 0.77340 0.76762 0.81088 1.20083 1.23569 1.20735 1.23328 0.99241 1.02065 0.93539 1.22175 0.94821 0.87845 0.96528 1.48521 1.51102 1.28449 1.04895 1.18187 0.81471 0.83301 0.81202 1.90735 1.52168 1.57372 1.46321 1.19947 1.01373 0.98087 0.95772 1.22751 0.94035 0.90593 1.01018 1.21168 0.99091 1.00606 0.94196 1.17986 0.91968 0.88026 0.95607 1.48165 1.31610 1.21013 1.09886 1.24521 0.97033 0.89068 1.00355 1.24003 1.05059 1.05614 0.88736 1.74326 1.13411 1.04970 1.20402 1.82141 1.11207 1.13870 1.01563 1.20829 0.99611 0.94741 0.99927 1.21108 0.93414 0.96270 0.95559 0.92682 0.89767 0.92083 0.79475 0.94449 0.90637 0.88361 0.90685 0.93540 0.79636 0.80273 0.73869 0.75796 0.83996 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 7.52 71.98 0.54 -4.20 16 2 C 0.10 2.51 2.72 45.36 0.12 2.63 16 3 H 0.12 2.05 6.25 -2.39 -0.01 2.04 16 4 C 0.16 4.82 3.59 46.20 0.17 4.98 16 5 H 0.10 2.71 7.85 -2.38 -0.02 2.69 16 6 N -0.71 -29.43 3.34 -317.24 -1.06 -30.49 16 7 C -0.23 -10.77 9.94 84.03 0.84 -9.93 16 8 H 0.09 3.78 7.68 -2.91 -0.02 3.76 16 9 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 10 N -0.97 -55.13 13.06 21.65 0.28 -54.85 16 11 Si 0.96 42.08 29.55 68.60 2.03 44.11 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 H -0.31 -14.22 7.11 99.48 0.71 -13.52 16 14 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 15 C -0.14 -3.79 6.77 31.99 0.22 -3.57 16 16 C 0.11 3.26 6.92 86.86 0.60 3.86 16 17 N -0.60 -17.29 3.07 -791.49 -2.43 -19.72 16 18 C 0.57 17.73 7.58 86.74 0.66 18.38 16 19 O -0.58 -22.16 16.70 -3.95 -0.07 -22.23 16 20 C -0.15 -3.72 5.00 -20.08 -0.10 -3.82 16 21 C -0.07 -1.23 6.28 22.50 0.14 -1.09 16 22 C -0.13 -1.93 9.46 22.34 0.21 -1.72 16 23 C 0.16 3.06 6.70 38.23 0.26 3.32 16 24 N -0.32 -6.38 3.85 -187.13 -0.72 -7.10 16 25 C 0.04 0.47 10.92 83.24 0.91 1.38 16 26 C -0.08 -1.11 11.86 83.71 0.99 -0.12 16 27 N -0.26 -6.19 12.33 -58.72 -0.72 -6.91 16 28 N -0.11 -2.85 13.15 37.02 0.49 -2.36 16 29 C -0.13 -2.91 9.66 22.34 0.22 -2.69 16 30 C -0.04 -1.07 9.58 22.50 0.22 -0.86 16 31 H 0.05 2.11 5.78 -2.39 -0.01 2.10 16 32 H 0.08 1.95 8.01 -2.39 -0.02 1.93 16 33 H 0.06 1.63 4.50 -2.39 -0.01 1.62 16 34 H 0.37 17.69 7.27 -92.71 -0.67 17.02 16 35 H 0.25 14.00 8.31 -92.71 -0.77 13.22 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.07 2.20 7.97 -2.39 -0.02 2.18 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.19 3.02 2.51 -2.91 -0.01 3.01 16 41 H 0.18 1.12 6.82 -2.91 -0.02 1.10 16 42 H 0.25 0.23 7.16 -2.91 -0.02 0.21 16 43 H 0.23 1.27 8.06 -2.91 -0.02 1.24 16 44 H 0.14 3.13 7.72 -2.91 -0.02 3.11 16 45 H 0.14 3.46 7.75 -2.91 -0.02 3.43 16 Total: -1.00 -71.65 364.44 4.63 -67.02 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.38 Total: 29.19 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 6.45 Total: 3.34 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -4.16 Total: -121.43 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.07 Total: -22.23 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -71.65 4.63 -67.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987331207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.338 kcal (2) G-P(sol) polarization free energy of solvation -71.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds