Wall clock time and date at job start Sat Apr 11 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.99697 * 2 1 4 4 C 1.54327 * 109.88291 * 121.09779 * 2 1 3 5 5 H 1.09002 * 110.71517 * 23.06910 * 4 2 1 6 6 N 1.46496 * 110.71777 * 259.97418 * 4 2 1 7 7 C 1.36945 * 119.99718 * 157.44137 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55150 * 103.10110 * 141.52070 * 4 2 1 16 16 C 1.54914 * 101.58287 * 324.58850 * 15 4 2 17 17 N 1.47317 * 110.06331 * 238.82864 * 2 1 3 18 18 C 1.34782 * 125.61141 * 61.68042 * 17 2 1 19 19 O 1.21539 * 120.00537 * 0.19636 * 18 17 2 20 20 C 1.47989 * 119.99640 * 180.20043 * 18 17 2 21 21 C 1.39438 * 119.64491 * 179.97438 * 20 18 17 22 22 C 1.38343 * 119.13427 * 179.97438 * 21 20 18 23 23 C 1.39295 * 118.43826 * 0.02562 * 22 21 20 24 24 N 1.39869 * 120.39195 * 180.02562 * 23 22 21 25 25 C 1.37159 * 126.48357 * 179.71577 * 24 23 22 26 26 C 1.34621 * 106.83066 * 179.87716 * 25 24 23 27 27 N 1.34154 * 108.21321 * 0.38238 * 26 25 24 28 28 C 1.30483 * 109.36727 * 359.75691 * 27 26 25 29 29 C 1.39267 * 119.21666 * 359.97438 * 23 22 21 30 30 N 1.31385 * 120.80290 * 359.72791 * 29 23 22 31 31 H 1.09003 * 109.47261 * 298.90381 * 1 2 3 32 32 H 1.08998 * 109.47194 * 58.90049 * 1 2 3 33 33 H 1.08997 * 109.47302 * 178.90057 * 1 2 3 34 34 H 0.96996 * 120.00499 * 337.43867 * 6 4 2 35 35 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 36 36 H 1.09000 * 111.00827 * 82.66368 * 15 4 2 37 37 H 1.08997 * 111.00493 * 206.47452 * 15 4 2 38 38 H 1.08998 * 110.36748 * 155.85045 * 16 15 4 39 39 H 1.09005 * 110.36345 * 278.16933 * 16 15 4 40 40 H 1.07997 * 120.43769 * 359.97438 * 21 20 18 41 41 H 1.08007 * 120.78733 * 179.97438 * 22 21 20 42 42 H 1.08000 * 126.58407 * 0.02562 * 25 24 23 43 43 H 1.08003 * 125.89710 * 180.14163 * 26 25 24 44 44 H 1.07997 * 125.72256 * 179.97438 * 28 27 26 45 45 H 1.08001 * 119.60356 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 1.2427 5 1 1.3039 -1.4437 1.6200 6 7 2.4554 0.1960 2.2875 7 6 2.5063 -0.2091 3.5946 8 1 2.2507 -1.2255 3.8553 9 6 2.8864 0.6866 4.5845 10 7 3.1974 1.9255 4.2669 11 14 2.9551 0.1343 6.3677 12 1 1.6365 0.3680 7.0094 13 1 3.2841 -1.3127 6.4253 14 1 3.9992 0.9084 7.0858 15 6 3.2869 -1.5177 0.6957 16 6 2.8160 -1.8830 -0.7342 17 7 2.0354 -0.7162 -1.1840 18 6 1.8164 -0.3648 -2.4666 19 8 1.1539 0.6218 -2.7218 20 6 2.3824 -1.1802 -3.5642 21 6 2.1508 -0.8102 -4.8885 22 6 2.6854 -1.5797 -5.9062 23 6 3.4381 -2.7010 -5.5647 24 7 3.9981 -3.5076 -6.5607 25 6 4.7610 -4.6309 -6.3674 26 6 5.0871 -5.0955 -7.5881 27 7 4.5486 -4.2781 -8.5055 28 6 3.8940 -3.3233 -7.9033 29 6 3.6274 -3.0088 -4.2197 30 7 3.1103 -2.2532 -3.2774 31 1 -0.3634 0.4967 0.8997 32 1 -0.3633 0.5308 -0.8799 33 1 -0.3634 -1.0274 -0.0197 34 1 2.6847 1.1090 2.0534 35 1 3.4626 2.5516 4.9587 36 1 4.1664 -0.8746 0.6651 37 1 3.4814 -2.4141 1.2846 38 1 3.6742 -2.0401 -1.3876 39 1 2.1879 -2.7736 -0.7108 40 1 1.5617 0.0658 -5.1168 41 1 2.5224 -1.3179 -6.9413 42 1 5.0436 -5.0615 -5.4181 43 1 5.6830 -5.9725 -7.7935 44 1 3.3596 -2.5209 -8.3901 45 1 4.2095 -3.8769 -3.9478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987343230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:38 Heat of formation + Delta-G solvation = 103.442939 kcal Electronic energy + Delta-G solvation = -28637.757688 eV Core-core repulsion = 24657.623717 eV Total energy + Delta-G solvation = -3980.133971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.89221 -40.97360 -39.47746 -37.45756 -35.20626 -34.14473 -32.92286 -31.77385 -30.94979 -30.41142 -29.97380 -28.96490 -25.44284 -25.18620 -24.51413 -23.10828 -22.74211 -21.60248 -21.39897 -20.40223 -19.53619 -19.11801 -17.44379 -17.21206 -16.95825 -16.22316 -15.99463 -15.53436 -15.36690 -14.99642 -14.76228 -14.60852 -14.31259 -14.16366 -13.73220 -13.71982 -13.61364 -13.31979 -13.22591 -12.85551 -12.65026 -12.14006 -11.91361 -11.61451 -11.54775 -11.21499 -11.05187 -10.86558 -10.70195 -10.59389 -10.42653 -10.39022 -10.22338 -9.97172 -9.73178 -9.67748 -9.32756 -8.96070 -8.93753 -8.42311 -7.04222 -5.83106 -3.13480 -0.16035 0.56179 1.58244 2.00582 2.55058 2.64713 2.91608 3.39895 3.45093 3.46372 3.46897 3.68790 3.88896 3.95033 4.09836 4.25650 4.31510 4.53394 4.61232 4.86675 4.97288 5.09446 5.10872 5.15757 5.20270 5.37341 5.40028 5.57314 5.62369 5.64387 5.72514 5.77940 5.85055 6.04873 6.06977 6.14563 6.20390 6.35883 6.44399 6.57602 6.58281 6.62289 6.67195 6.92529 7.15107 7.43713 7.63802 7.65324 8.13966 8.34245 9.45705 10.00112 10.34838 11.39045 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.002146 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.578955 B =13042.096875 C =13920.976500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.081 0.919 4 C 0.176 3.824 5 H 0.066 0.934 6 N -0.715 5.715 7 C -0.242 4.242 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.281 1.281 14 H -0.291 1.291 15 C -0.159 4.159 16 C 0.101 3.899 17 N -0.584 5.584 18 C 0.577 3.423 19 O -0.536 6.536 20 C 0.084 3.916 21 C -0.083 4.083 22 C -0.096 4.096 23 C 0.099 3.901 24 N -0.410 5.410 25 C -0.052 4.052 26 C -0.019 4.019 27 N -0.482 5.482 28 C 0.191 3.809 29 C 0.092 3.908 30 N -0.421 5.421 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.183 0.817 43 H 0.177 0.823 44 H 0.211 0.789 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.648 -12.205 -23.012 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.099 0.901 4 C 0.064 3.936 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.373 4.373 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.207 1.207 14 H -0.218 1.218 15 C -0.201 4.201 16 C -0.021 4.021 17 N -0.315 5.315 18 C 0.363 3.637 19 O -0.414 6.414 20 C -0.054 4.054 21 C -0.104 4.104 22 C -0.124 4.124 23 C 0.003 3.997 24 N -0.090 5.090 25 C -0.181 4.181 26 C -0.164 4.164 27 N -0.199 5.199 28 C -0.090 4.090 29 C -0.070 4.070 30 N -0.132 5.132 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.081 0.919 40 H 0.179 0.821 41 H 0.169 0.831 42 H 0.200 0.800 43 H 0.195 0.805 44 H 0.227 0.773 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.462 -11.984 -22.910 25.859 hybrid contribution 0.085 0.213 0.892 0.921 sum 0.547 -11.771 -22.018 24.973 Atomic orbital electron populations 1.22039 0.94646 1.01689 1.02838 1.22089 0.94535 0.96991 0.84242 0.90141 1.21253 0.93757 0.91564 0.87003 0.91607 1.42348 1.80276 1.10460 1.02433 1.19200 1.38837 0.96025 0.83276 0.90982 1.24770 1.02050 0.95780 0.98139 1.69667 1.51887 1.03797 1.32414 0.86177 0.77297 0.77596 0.85001 1.21662 1.20701 1.21775 1.23625 1.01141 1.01636 0.93673 1.22702 0.95895 0.87124 0.96417 1.48486 1.50318 1.28369 1.04366 1.17310 0.80994 0.84123 0.81258 1.90793 1.40697 1.26839 1.83060 1.21407 0.96870 0.93586 0.93586 1.22038 0.97339 0.99920 0.91077 1.21299 0.96724 0.93028 1.01308 1.19109 0.98010 0.93096 0.89528 1.43139 1.38347 1.20875 1.06641 1.22896 1.01985 0.91164 1.02017 1.22435 1.04302 1.01631 0.88069 1.70359 1.12092 1.04385 1.33056 1.25385 1.03294 1.01552 0.78777 1.22736 0.98854 0.99502 0.85908 1.68037 1.06339 1.03759 1.35063 0.90889 0.91996 0.93034 0.78013 0.93385 0.90829 0.90613 0.88553 0.91897 0.82117 0.83136 0.79998 0.80545 0.77300 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.11 37.16 0.34 -2.18 16 2 C 0.12 2.18 3.22 -66.79 -0.21 1.96 16 3 H 0.08 1.57 7.70 -51.93 -0.40 1.17 16 4 C 0.18 3.33 3.12 -66.10 -0.21 3.13 16 5 H 0.07 1.25 7.81 -51.93 -0.41 0.84 16 6 N -0.71 -17.14 5.24 -51.66 -0.27 -17.41 16 7 C -0.24 -6.44 9.97 -15.06 -0.15 -6.59 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 11 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 C -0.16 -2.62 6.77 -24.58 -0.17 -2.79 16 16 C 0.10 1.40 5.94 -2.53 -0.02 1.38 16 17 N -0.58 -9.08 3.08 -163.84 -0.50 -9.59 16 18 C 0.58 8.78 7.63 -12.26 -0.09 8.69 16 19 O -0.54 -9.39 15.39 5.33 0.08 -9.31 16 20 C 0.08 0.99 6.72 -83.01 -0.56 0.44 16 21 C -0.08 -0.75 9.62 -39.10 -0.38 -1.12 16 22 C -0.10 -0.64 9.57 -39.15 -0.37 -1.02 16 23 C 0.10 0.73 6.66 -83.42 -0.56 0.17 16 24 N -0.41 -2.95 2.98 -61.93 -0.18 -3.14 16 25 C -0.05 -0.33 10.86 -16.45 -0.18 -0.51 16 26 C -0.02 -0.14 11.85 -17.82 -0.21 -0.36 16 27 N -0.48 -4.55 11.24 -14.47 -0.16 -4.71 16 28 C 0.19 1.40 11.93 -89.59 -1.07 0.33 16 29 C 0.09 0.73 10.64 -17.36 -0.18 0.55 16 30 N -0.42 -4.46 6.57 -9.66 -0.06 -4.52 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.03 6.93 -51.93 -0.36 0.67 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.39 9.99 7.53 -40.82 -0.31 9.68 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.10 1.23 5.87 -51.93 -0.30 0.93 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.16 1.34 7.63 -52.49 -0.40 0.94 16 41 H 0.15 0.53 6.88 -52.48 -0.36 0.17 16 42 H 0.18 0.63 7.16 -52.49 -0.38 0.25 16 43 H 0.18 0.90 8.06 -52.48 -0.42 0.47 16 44 H 0.21 0.79 7.12 -52.49 -0.37 0.42 16 45 H 0.17 0.89 6.82 -52.49 -0.36 0.53 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -33.34 373.91 -9.61 -42.95 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.73 Total: 8.36 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -4.11 Total: 1.69 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: -0.46 Total: -66.10 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.34 -9.61 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987343230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.392 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds