Wall clock time and date at job start Sat Apr 11 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.99697 * 2 1 4 4 C 1.54327 * 109.88291 * 121.09779 * 2 1 3 5 5 H 1.09002 * 110.71517 * 23.06910 * 4 2 1 6 6 N 1.46496 * 110.71777 * 259.97418 * 4 2 1 7 7 C 1.36945 * 119.99718 * 157.44137 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55150 * 103.10110 * 141.52070 * 4 2 1 16 16 C 1.54914 * 101.58287 * 324.58850 * 15 4 2 17 17 N 1.47317 * 110.06331 * 238.82864 * 2 1 3 18 18 C 1.34782 * 125.61141 * 61.68042 * 17 2 1 19 19 O 1.21539 * 120.00537 * 0.19636 * 18 17 2 20 20 C 1.47989 * 119.99640 * 180.20043 * 18 17 2 21 21 C 1.39438 * 119.64491 * 179.97438 * 20 18 17 22 22 C 1.38343 * 119.13427 * 179.97438 * 21 20 18 23 23 C 1.39295 * 118.43826 * 0.02562 * 22 21 20 24 24 N 1.39869 * 120.39195 * 180.02562 * 23 22 21 25 25 C 1.37159 * 126.48357 * 179.71577 * 24 23 22 26 26 C 1.34621 * 106.83066 * 179.87716 * 25 24 23 27 27 N 1.34154 * 108.21321 * 0.38238 * 26 25 24 28 28 C 1.30483 * 109.36727 * 359.75691 * 27 26 25 29 29 C 1.39267 * 119.21666 * 359.97438 * 23 22 21 30 30 N 1.31385 * 120.80290 * 359.72791 * 29 23 22 31 31 H 1.09003 * 109.47261 * 298.90381 * 1 2 3 32 32 H 1.08998 * 109.47194 * 58.90049 * 1 2 3 33 33 H 1.08997 * 109.47302 * 178.90057 * 1 2 3 34 34 H 0.96996 * 120.00499 * 337.43867 * 6 4 2 35 35 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 36 36 H 1.09000 * 111.00827 * 82.66368 * 15 4 2 37 37 H 1.08997 * 111.00493 * 206.47452 * 15 4 2 38 38 H 1.08998 * 110.36748 * 155.85045 * 16 15 4 39 39 H 1.09005 * 110.36345 * 278.16933 * 16 15 4 40 40 H 1.07997 * 120.43769 * 359.97438 * 21 20 18 41 41 H 1.08007 * 120.78733 * 179.97438 * 22 21 20 42 42 H 1.08000 * 126.58407 * 0.02562 * 25 24 23 43 43 H 1.08003 * 125.89710 * 180.14163 * 26 25 24 44 44 H 1.07997 * 125.72256 * 179.97438 * 28 27 26 45 45 H 1.08001 * 119.60356 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 1.2427 5 1 1.3039 -1.4437 1.6200 6 7 2.4554 0.1960 2.2875 7 6 2.5063 -0.2091 3.5946 8 1 2.2507 -1.2255 3.8553 9 6 2.8864 0.6866 4.5845 10 7 3.1974 1.9255 4.2669 11 14 2.9551 0.1343 6.3677 12 1 1.6365 0.3680 7.0094 13 1 3.2841 -1.3127 6.4253 14 1 3.9992 0.9084 7.0858 15 6 3.2869 -1.5177 0.6957 16 6 2.8160 -1.8830 -0.7342 17 7 2.0354 -0.7162 -1.1840 18 6 1.8164 -0.3648 -2.4666 19 8 1.1539 0.6218 -2.7218 20 6 2.3824 -1.1802 -3.5642 21 6 2.1508 -0.8102 -4.8885 22 6 2.6854 -1.5797 -5.9062 23 6 3.4381 -2.7010 -5.5647 24 7 3.9981 -3.5076 -6.5607 25 6 4.7610 -4.6309 -6.3674 26 6 5.0871 -5.0955 -7.5881 27 7 4.5486 -4.2781 -8.5055 28 6 3.8940 -3.3233 -7.9033 29 6 3.6274 -3.0088 -4.2197 30 7 3.1103 -2.2532 -3.2774 31 1 -0.3634 0.4967 0.8997 32 1 -0.3633 0.5308 -0.8799 33 1 -0.3634 -1.0274 -0.0197 34 1 2.6847 1.1090 2.0534 35 1 3.4626 2.5516 4.9587 36 1 4.1664 -0.8746 0.6651 37 1 3.4814 -2.4141 1.2846 38 1 3.6742 -2.0401 -1.3876 39 1 2.1879 -2.7736 -0.7108 40 1 1.5617 0.0658 -5.1168 41 1 2.5224 -1.3179 -6.9413 42 1 5.0436 -5.0615 -5.4181 43 1 5.6830 -5.9725 -7.7935 44 1 3.3596 -2.5209 -8.3901 45 1 4.2095 -3.8769 -3.9478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987343230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:38 Heat of formation + Delta-G solvation = 83.721981 kcal Electronic energy + Delta-G solvation = -28638.612853 eV Core-core repulsion = 24657.623717 eV Total energy + Delta-G solvation = -3980.989136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.41793 -41.84967 -40.53044 -38.77862 -36.04357 -35.70822 -33.64568 -33.31037 -32.32415 -31.38965 -30.64095 -30.23048 -26.87140 -26.19644 -25.22940 -24.70968 -23.83001 -22.32203 -21.96190 -21.69621 -20.73010 -19.67777 -19.18086 -18.40221 -17.86922 -17.29072 -16.74747 -16.48393 -16.47153 -16.05631 -15.80913 -15.51389 -15.43930 -15.00472 -14.82196 -14.79420 -14.66952 -14.44147 -14.25207 -14.05467 -13.67801 -13.56360 -13.27911 -13.10485 -12.89774 -12.61597 -12.54154 -12.20701 -12.18123 -12.06320 -11.73362 -11.63806 -11.31756 -11.23439 -11.01787 -10.94658 -10.52114 -9.93829 -9.68552 -9.46420 -9.01441 -7.93340 -5.23277 -0.84892 -0.02505 0.97835 1.46516 1.49832 1.51254 1.59466 1.69742 1.79822 2.09143 2.57602 2.65551 2.90380 3.33763 3.36490 3.39351 3.51432 3.68857 3.75097 3.79030 3.81285 3.97535 4.03800 4.20046 4.37386 4.40716 4.43565 4.46676 4.54750 4.60044 4.67063 4.70780 4.72089 4.86106 5.00592 5.05494 5.13979 5.19851 5.22017 5.24775 5.38161 5.46292 5.55660 5.67671 6.07912 6.26761 6.39632 6.51302 6.93426 6.98495 7.33378 8.05110 8.29198 9.30086 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.002146 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.578955 B =13042.096875 C =13920.976500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.131 3.869 3 H 0.050 0.950 4 C 0.171 3.829 5 H 0.071 0.929 6 N -0.728 5.728 7 C -0.235 4.235 8 H 0.083 0.917 9 C -0.077 4.077 10 N -0.971 5.971 11 Si 0.974 3.026 12 H -0.289 1.289 13 H -0.265 1.265 14 H -0.300 1.300 15 C -0.151 4.151 16 C 0.115 3.885 17 N -0.590 5.590 18 C 0.573 3.427 19 O -0.569 6.569 20 C 0.057 3.943 21 C -0.080 4.080 22 C -0.084 4.084 23 C 0.109 3.891 24 N -0.414 5.414 25 C -0.050 4.050 26 C -0.040 4.040 27 N -0.520 5.520 28 C 0.187 3.813 29 C 0.093 3.907 30 N -0.436 5.436 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.163 0.837 41 H 0.186 0.814 42 H 0.212 0.788 43 H 0.192 0.808 44 H 0.239 0.761 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.914 -14.919 -24.575 28.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.068 0.932 4 C 0.061 3.939 5 H 0.089 0.911 6 N -0.368 5.368 7 C -0.366 4.366 8 H 0.101 0.899 9 C -0.269 4.269 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.216 1.216 13 H -0.190 1.190 14 H -0.227 1.227 15 C -0.192 4.192 16 C -0.007 4.007 17 N -0.321 5.321 18 C 0.362 3.638 19 O -0.449 6.449 20 C -0.080 4.080 21 C -0.102 4.102 22 C -0.111 4.111 23 C 0.013 3.987 24 N -0.094 5.094 25 C -0.178 4.178 26 C -0.184 4.184 27 N -0.237 5.237 28 C -0.093 4.093 29 C -0.070 4.070 30 N -0.147 5.147 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.203 0.797 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.181 0.819 41 H 0.203 0.797 42 H 0.228 0.772 43 H 0.209 0.791 44 H 0.255 0.745 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 0.725 -14.775 -24.513 28.630 hybrid contribution 0.030 0.958 1.169 1.511 sum 0.755 -13.818 -23.344 27.137 Atomic orbital electron populations 1.21927 0.93799 1.02438 1.01987 1.21787 0.95122 0.95536 0.84922 0.93153 1.21431 0.94992 0.91040 0.86420 0.91080 1.42513 1.80625 1.10670 1.02947 1.19613 1.36521 0.96200 0.84302 0.89894 1.25585 1.03135 0.96015 1.02201 1.69836 1.54134 1.05019 1.33174 0.85134 0.76719 0.77743 0.80117 1.21645 1.18984 1.22669 1.23455 0.98915 1.01165 0.95623 1.22709 0.96542 0.86881 0.94522 1.48521 1.50749 1.28688 1.04133 1.17890 0.80306 0.84011 0.81630 1.90761 1.42163 1.28377 1.83593 1.20934 0.99252 0.94692 0.93111 1.22080 0.97338 1.00264 0.90476 1.21610 0.95208 0.91948 1.02380 1.19173 0.97167 0.92893 0.89482 1.43221 1.38530 1.21084 1.06575 1.23393 1.00971 0.90562 1.02891 1.22829 1.04867 1.02272 0.88420 1.70346 1.13383 1.05630 1.34355 1.26013 1.02769 1.01702 0.78855 1.23139 0.98375 0.99649 0.85813 1.67864 1.06745 1.03777 1.36266 0.91980 0.92525 0.91400 0.79698 0.94144 0.92835 0.89386 0.87015 0.89989 0.81944 0.79671 0.77165 0.79138 0.74469 0.78680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.11 71.98 0.66 -4.09 16 2 C 0.13 4.67 3.22 45.29 0.15 4.82 16 3 H 0.05 2.10 7.70 -2.39 -0.02 2.08 16 4 C 0.17 6.48 3.12 46.18 0.14 6.63 16 5 H 0.07 2.63 7.81 -2.39 -0.02 2.62 16 6 N -0.73 -35.75 5.24 -317.34 -1.66 -37.42 16 7 C -0.23 -12.51 9.97 84.03 0.84 -11.68 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 10 N -0.97 -59.09 13.06 21.65 0.28 -58.80 16 11 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 15 C -0.15 -4.83 6.77 31.99 0.22 -4.61 16 16 C 0.12 2.99 5.94 86.86 0.52 3.50 16 17 N -0.59 -18.18 3.08 -790.56 -2.43 -20.61 16 18 C 0.57 17.38 7.63 86.83 0.66 18.04 16 19 O -0.57 -20.37 15.39 -3.84 -0.06 -20.43 16 20 C 0.06 1.27 6.72 41.88 0.28 1.55 16 21 C -0.08 -1.29 9.62 22.58 0.22 -1.08 16 22 C -0.08 -0.84 9.57 22.55 0.22 -0.63 16 23 C 0.11 1.22 6.66 38.36 0.26 1.48 16 24 N -0.41 -4.52 2.98 -349.85 -1.04 -5.56 16 25 C -0.05 -0.48 10.86 83.03 0.90 0.42 16 26 C -0.04 -0.52 11.85 83.51 0.99 0.47 16 27 N -0.52 -8.74 11.24 -199.68 -2.25 -10.99 16 28 C 0.19 2.18 11.93 179.99 2.15 4.33 16 29 C 0.09 1.16 10.64 85.01 0.90 2.06 16 30 N -0.44 -8.14 6.57 -184.46 -1.21 -9.35 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.92 6.93 -2.39 -0.02 1.91 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.37 20.14 7.53 -92.71 -0.70 19.44 16 35 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.11 2.62 5.87 -2.39 -0.01 2.60 16 39 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.16 2.51 7.63 -2.91 -0.02 2.49 16 41 H 0.19 0.47 6.88 -2.91 -0.02 0.45 16 42 H 0.21 0.57 7.16 -2.91 -0.02 0.55 16 43 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 44 H 0.24 0.91 7.12 -2.91 -0.02 0.89 16 45 H 0.20 1.20 6.82 -2.91 -0.02 1.18 16 Total: -1.00 -74.57 373.91 3.55 -71.02 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.34 Total: 27.58 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 9.56 Total: 17.34 kcal Atomic # 7 Polarization: -134.43 SS G_CDS: -8.31 Total: -142.74 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.06 Total: -20.43 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -74.57 3.55 -71.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987343230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.744 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds