Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.99834 * 2 1 4 4 C 1.54323 * 109.88368 * 121.09377 * 2 1 3 5 5 H 1.09002 * 110.72057 * 23.24789 * 4 2 1 6 6 N 1.46505 * 110.71829 * 260.15198 * 4 2 1 7 7 C 1.36938 * 119.99525 * 157.44073 * 6 4 2 8 8 H 1.08006 * 120.00198 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99618 * 179.97438 * 7 6 4 10 10 N 1.31621 * 119.99631 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00007 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47036 * 90.00372 * 11 9 7 13 13 H 1.48505 * 109.47071 * 209.99763 * 11 9 7 14 14 H 1.48488 * 109.47145 * 329.99894 * 11 9 7 15 15 C 1.55153 * 103.10236 * 141.70038 * 4 2 1 16 16 C 1.54915 * 101.58175 * 324.40929 * 15 4 2 17 17 N 1.47428 * 104.83102 * 37.00975 * 16 15 4 18 18 C 1.34778 * 125.64860 * 155.91040 * 17 16 15 19 19 O 1.21558 * 120.00115 * 179.97438 * 18 17 16 20 20 C 1.47755 * 119.99860 * 359.97438 * 18 17 16 21 21 C 1.40600 * 126.04408 * 179.70909 * 20 18 17 22 22 N 1.31252 * 106.62434 * 179.86122 * 21 20 18 23 23 N 1.40103 * 107.17972 * 0.39591 * 22 21 20 24 24 C 1.40137 * 125.57152 * 179.71713 * 23 22 21 25 25 C 1.38860 * 120.07367 * 179.75090 * 24 23 22 26 26 C 1.38115 * 119.93146 * 179.72507 * 25 24 23 27 27 C 1.38278 * 120.06807 * 0.54805 * 26 25 24 28 28 C 1.38287 * 120.14143 * 359.72495 * 27 26 25 29 29 C 1.38122 * 120.06331 * 359.97438 * 28 27 26 30 30 N 1.28709 * 108.86369 * 359.73712 * 23 22 21 31 31 H 1.09004 * 109.47442 * 298.90270 * 1 2 3 32 32 H 1.08999 * 109.47429 * 58.90757 * 1 2 3 33 33 H 1.09004 * 109.47135 * 178.90269 * 1 2 3 34 34 H 0.96996 * 120.00388 * 337.43652 * 6 4 2 35 35 H 0.97001 * 120.00035 * 180.02562 * 10 9 7 36 36 H 1.09003 * 111.00505 * 82.48412 * 15 4 2 37 37 H 1.09001 * 111.00757 * 206.33495 * 15 4 2 38 38 H 1.09000 * 110.36497 * 155.84404 * 16 15 4 39 39 H 1.08998 * 110.36590 * 278.17045 * 16 15 4 40 40 H 1.07998 * 126.68609 * 0.02562 * 21 20 18 41 41 H 1.08005 * 120.02825 * 359.97438 * 25 24 23 42 42 H 1.07997 * 119.96348 * 180.29556 * 26 25 24 43 43 H 1.08005 * 119.93184 * 179.74981 * 27 26 25 44 44 H 1.07994 * 119.96980 * 180.02562 * 28 27 26 45 45 H 1.07999 * 120.03037 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 1.3051 -1.4459 1.6183 6 7 2.4515 0.1961 2.2891 7 6 2.5014 -0.2102 3.5958 8 1 2.2487 -1.2278 3.8551 9 6 2.8778 0.6856 4.5872 10 7 2.9262 0.2950 5.8432 11 14 3.3168 2.4450 4.1386 12 1 2.0951 3.2878 4.1875 13 1 4.3172 2.9670 5.1040 14 1 3.8871 2.4787 2.7680 15 6 3.2897 -1.5140 0.6969 16 6 2.8201 -1.8831 -0.7325 17 7 2.0352 -0.7197 -1.1841 18 6 1.8148 -0.3710 -2.4672 19 8 1.1488 0.6129 -2.7238 20 6 2.3829 -1.1847 -3.5618 21 6 2.2293 -0.9425 -4.9383 22 7 2.8888 -1.8903 -5.5623 23 7 3.4425 -2.7237 -4.5816 24 6 4.2203 -3.8637 -4.8249 25 6 4.7177 -4.6065 -3.7623 26 6 5.4792 -5.7328 -4.0055 27 6 5.7558 -6.1147 -5.3055 28 6 5.2667 -5.3739 -6.3658 29 6 4.4994 -4.2501 -6.1291 30 7 3.1199 -2.2714 -3.4206 31 1 -0.3634 0.4967 0.8997 32 1 -0.3634 0.5307 -0.8800 33 1 -0.3633 -1.0275 -0.0197 34 1 2.6788 1.1099 2.0563 35 1 3.1888 0.9210 6.5361 36 1 4.1668 -0.8676 0.6652 37 1 3.4871 -2.4092 1.2866 38 1 3.6788 -2.0380 -1.3857 39 1 2.1952 -2.7759 -0.7078 40 1 1.6784 -0.1326 -5.3934 41 1 4.5060 -4.3059 -2.7468 42 1 5.8623 -6.3136 -3.1796 43 1 6.3549 -6.9935 -5.4931 44 1 5.4841 -5.6749 -7.3799 45 1 4.1180 -3.6717 -6.9576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987490987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = 135.705973 kcal Electronic energy + Delta-G solvation = -28978.213885 eV Core-core repulsion = 24999.478944 eV Total energy + Delta-G solvation = -3978.734941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.99270 -40.00107 -39.50147 -37.53209 -34.34993 -34.21975 -32.89826 -31.70539 -31.37661 -31.03126 -30.09055 -29.27943 -25.46117 -25.24788 -24.06725 -23.03798 -22.70058 -21.78332 -21.64649 -20.31849 -19.41059 -18.55423 -17.61919 -16.96963 -16.78945 -16.71298 -16.13244 -15.67149 -15.25486 -14.86777 -14.61940 -14.47653 -14.13365 -13.97395 -13.90657 -13.42877 -13.31512 -12.92320 -12.74211 -12.56712 -12.31132 -12.15955 -12.03621 -11.93570 -11.69624 -11.39625 -11.24331 -11.12782 -11.08975 -10.86805 -10.64327 -10.54922 -10.35335 -10.14453 -9.98488 -9.64346 -9.54362 -8.98396 -8.76504 -8.51114 -7.35736 -5.83198 -3.20498 0.13868 0.80809 1.39095 1.54522 1.60681 2.90031 3.14697 3.27079 3.35463 3.38806 3.39607 3.43814 4.30810 4.36392 4.46350 4.54310 4.56478 4.62968 4.82087 4.94044 4.95436 5.01392 5.14153 5.21889 5.26738 5.43565 5.46171 5.54698 5.55600 5.58284 5.68882 5.79259 5.81704 5.83303 5.94149 5.96842 5.98313 6.11961 6.21736 6.32444 6.48831 6.50392 6.52703 6.57343 6.79010 7.41040 7.56224 7.90605 8.09324 8.35165 9.11838 9.84447 10.02688 11.34507 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.002660 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.113595 B =10525.625425 C =11797.811174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.126 3.874 3 H 0.078 0.922 4 C 0.181 3.819 5 H 0.076 0.924 6 N -0.739 5.739 7 C -0.247 4.247 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.155 4.155 16 C 0.099 3.901 17 N -0.593 5.593 18 C 0.615 3.385 19 O -0.531 6.531 20 C -0.044 4.044 21 C 0.080 3.920 22 N -0.281 5.281 23 N -0.164 5.164 24 C 0.155 3.845 25 C -0.110 4.110 26 C -0.098 4.098 27 C -0.117 4.117 28 C -0.101 4.101 29 C -0.109 4.109 30 N -0.196 5.196 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.219 0.781 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -12.176 -25.588 28.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.096 0.904 4 C 0.070 3.930 5 H 0.094 0.906 6 N -0.381 5.381 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.203 1.203 15 C -0.196 4.196 16 C -0.024 4.024 17 N -0.326 5.326 18 C 0.400 3.600 19 O -0.407 6.407 20 C -0.211 4.211 21 C -0.111 4.111 22 N -0.108 5.108 23 N -0.056 5.056 24 C 0.064 3.936 25 C -0.131 4.131 26 C -0.116 4.116 27 C -0.136 4.136 28 C -0.120 4.120 29 C -0.130 4.130 30 N -0.040 5.040 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.196 0.804 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.235 0.765 41 H 0.161 0.839 42 H 0.156 0.844 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.786 -12.771 -25.829 29.062 hybrid contribution -0.062 2.011 -0.041 2.013 sum 3.724 -10.760 -25.870 28.265 Atomic orbital electron populations 1.22064 0.94281 1.02116 1.02953 1.22096 0.94858 0.96652 0.84146 0.90364 1.21233 0.94028 0.91326 0.86419 0.90578 1.42702 1.81931 1.09581 1.03838 1.19018 1.39446 0.98107 0.81092 0.88981 1.24659 1.01275 0.97709 0.95107 1.69695 1.53950 1.34901 0.99194 0.86593 0.78320 0.86393 0.77485 1.20896 1.21678 1.20268 1.23556 1.00878 1.01994 0.93204 1.22576 0.95310 0.87762 0.96760 1.48468 1.51057 1.28697 1.04342 1.16265 0.80261 0.83280 0.80162 1.90803 1.40395 1.26657 1.82813 1.23055 1.05451 0.96926 0.95619 1.25146 0.96893 0.97807 0.91269 1.78009 1.13574 1.03928 1.15250 1.48365 1.37108 1.20220 0.99934 1.17408 0.95740 0.85097 0.95350 1.21041 0.98135 0.95150 0.98773 1.21108 0.97279 0.95673 0.97585 1.21364 0.99612 1.00046 0.92570 1.21071 0.96871 0.94129 0.99924 1.20935 0.99414 0.97991 0.94622 1.73937 1.10911 1.10090 1.09033 0.90824 0.91753 0.92685 0.80362 0.92942 0.90778 0.89986 0.89871 0.91457 0.76463 0.83942 0.84432 0.85062 0.84683 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.11 37.16 0.34 -2.08 16 2 C 0.13 2.09 3.23 -66.70 -0.22 1.87 16 3 H 0.08 1.40 7.70 -51.93 -0.40 1.00 16 4 C 0.18 3.29 3.12 -66.10 -0.21 3.08 16 5 H 0.08 1.40 7.81 -51.93 -0.41 0.99 16 6 N -0.74 -16.63 5.04 -51.65 -0.26 -16.89 16 7 C -0.25 -6.64 10.45 -15.06 -0.16 -6.79 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 9 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 10 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 11 Si 0.88 21.68 27.73 -169.99 -4.71 16.97 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 15 C -0.16 -2.46 6.77 -24.58 -0.17 -2.63 16 16 C 0.10 1.35 6.14 -2.52 -0.02 1.33 16 17 N -0.59 -9.05 3.08 -163.80 -0.50 -9.56 16 18 C 0.62 9.49 7.66 -12.37 -0.09 9.39 16 19 O -0.53 -9.22 15.97 5.31 0.08 -9.13 16 20 C -0.04 -0.59 6.94 -82.99 -0.58 -1.16 16 21 C 0.08 0.92 11.91 -16.91 -0.20 0.71 16 22 N -0.28 -3.34 11.90 30.85 0.37 -2.97 16 23 N -0.16 -1.99 4.44 32.48 0.14 -1.85 16 24 C 0.15 1.57 6.74 -83.60 -0.56 1.01 16 25 C -0.11 -0.96 9.61 -39.40 -0.38 -1.33 16 26 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 27 C -0.12 -0.64 10.04 -39.55 -0.40 -1.04 16 28 C -0.10 -0.60 10.04 -39.61 -0.40 -1.00 16 29 C -0.11 -0.89 9.65 -39.39 -0.38 -1.27 16 30 N -0.20 -2.52 8.35 33.29 0.28 -2.24 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.02 6.93 -51.93 -0.36 0.66 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.36 8.20 5.40 -40.82 -0.22 7.98 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.08 6.18 -51.93 -0.32 0.76 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.22 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.14 1.24 7.67 -52.48 -0.40 0.84 16 42 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.13 0.40 8.06 -52.48 -0.42 -0.02 16 44 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 45 H 0.14 1.10 7.67 -52.49 -0.40 0.70 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -32.77 376.83 -7.96 -40.73 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.91 Total: 7.73 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -3.90 Total: -0.78 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.80 Total: -61.19 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.77 -7.96 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987490987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.437 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds