Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.87591 * 2 1 4 4 C 1.54332 * 109.88444 * 121.02077 * 2 1 3 5 5 H 1.09001 * 110.71550 * 215.76532 * 4 2 1 6 6 N 1.46505 * 110.71747 * 338.85792 * 4 2 1 7 7 C 1.36931 * 119.99788 * 205.00190 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48508 * 109.46872 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 119.99997 * 11 9 7 14 14 H 1.48498 * 109.47018 * 240.00044 * 11 9 7 15 15 C 1.55150 * 102.94391 * 97.22116 * 4 2 1 16 16 C 1.54906 * 101.58255 * 35.50456 * 15 4 2 17 17 N 1.47019 * 109.88069 * 238.82341 * 2 1 3 18 18 C 1.34777 * 125.64806 * 59.56206 * 17 2 1 19 19 O 1.21564 * 120.00045 * 359.97438 * 18 17 2 20 20 C 1.47763 * 120.00236 * 179.97438 * 18 17 2 21 21 C 1.40592 * 126.04607 * 180.02562 * 20 18 17 22 22 N 1.31248 * 106.62922 * 179.97438 * 21 20 18 23 23 N 1.40105 * 107.17656 * 359.97438 * 22 21 20 24 24 C 1.40139 * 125.57171 * 180.02562 * 23 22 21 25 25 C 1.38862 * 120.07055 * 179.69804 * 24 23 22 26 26 C 1.38110 * 119.92785 * 179.78707 * 25 24 23 27 27 C 1.38284 * 120.07104 * 0.46965 * 26 25 24 28 28 C 1.38283 * 120.13846 * 359.78184 * 27 26 25 29 29 C 1.38112 * 120.06688 * 359.97438 * 28 27 26 30 30 N 1.28711 * 108.86209 * 359.73052 * 23 22 21 31 31 H 1.09003 * 109.46741 * 298.98257 * 1 2 3 32 32 H 1.08992 * 109.46874 * 58.98458 * 1 2 3 33 33 H 1.08999 * 109.46961 * 178.98698 * 1 2 3 34 34 H 0.97000 * 119.99792 * 24.99985 * 6 4 2 35 35 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 36 36 H 1.09000 * 111.00256 * 153.57994 * 15 4 2 37 37 H 1.09000 * 111.00472 * 277.42737 * 15 4 2 38 38 H 1.09004 * 110.36727 * 204.15442 * 16 15 4 39 39 H 1.08995 * 110.37119 * 81.82663 * 16 15 4 40 40 H 1.08003 * 126.68952 * 0.02673 * 21 20 18 41 41 H 1.07997 * 120.03279 * 359.97438 * 25 24 23 42 42 H 1.08001 * 119.96057 * 180.25104 * 26 25 24 43 43 H 1.07999 * 119.93179 * 179.76658 * 27 26 25 44 44 H 1.08001 * 119.96686 * 180.02562 * 28 27 26 45 45 H 1.08003 * 120.03397 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.9640 -0.2791 1.6204 6 7 1.0293 -0.7996 2.2887 7 6 1.3954 -0.9339 3.6013 8 1 2.4403 -1.0014 3.8663 9 6 0.4239 -0.9771 4.5918 10 7 -0.8493 -0.8943 4.2689 11 14 0.9237 -1.1526 6.3832 12 1 2.4038 -1.2254 6.4793 13 1 0.4344 0.0206 7.1508 14 1 0.3301 -2.3932 6.9434 15 6 2.3519 -2.1686 0.6954 16 6 2.8568 -1.8509 -0.7342 17 7 2.0300 -0.7157 -1.1829 18 6 1.7753 -0.3879 -2.4651 19 8 1.0768 0.5740 -2.7194 20 6 2.3451 -1.1977 -3.5620 21 6 2.1634 -0.9718 -4.9377 22 7 2.8333 -1.9106 -5.5641 23 7 3.4296 -2.7166 -4.5855 24 6 4.2360 -3.8359 -4.8317 25 6 4.7758 -4.5515 -3.7710 26 6 5.5665 -5.6568 -4.0170 27 6 5.8289 -6.0454 -5.3179 28 6 5.2971 -5.3319 -6.3763 29 6 4.5015 -4.2286 -6.1369 30 7 3.1208 -2.2573 -3.4234 31 1 -0.3633 0.4980 0.8990 32 1 -0.3633 0.5295 -0.8807 33 1 -0.3633 -1.0275 -0.0182 34 1 0.0910 -0.7385 2.0506 35 1 -1.5282 -0.9248 4.9611 36 1 3.1270 -2.6602 1.2833 37 1 1.4452 -2.7728 0.6642 38 1 2.7087 -2.7100 -1.3886 39 1 3.9091 -1.5678 -0.7107 40 1 1.5858 -0.1796 -5.3908 41 1 4.5749 -4.2457 -2.7549 42 1 5.9832 -6.2160 -3.1924 43 1 6.4506 -6.9079 -5.5076 44 1 5.5035 -5.6381 -7.3912 45 1 4.0868 -3.6715 -6.9640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987490989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = 138.381016 kcal Electronic energy + Delta-G solvation = -29005.685426 eV Core-core repulsion = 25027.066484 eV Total energy + Delta-G solvation = -3978.618942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.94025 -39.95293 -39.47205 -37.47180 -34.27496 -34.16961 -32.82457 -31.63907 -31.32526 -30.71875 -29.92235 -28.74000 -25.31421 -25.17249 -24.06721 -23.44717 -22.78749 -21.87548 -21.61582 -19.99341 -18.79696 -18.51614 -17.59072 -16.92874 -16.69424 -16.69078 -15.65505 -15.57258 -15.43421 -14.89791 -14.59657 -14.44122 -14.20476 -13.95303 -13.70955 -13.39196 -13.29176 -12.90145 -12.66707 -12.32772 -12.15317 -12.01203 -11.91689 -11.72605 -11.54225 -11.24858 -11.08373 -11.04379 -10.97053 -10.77730 -10.53900 -10.40572 -10.22412 -10.02283 -9.89819 -9.64831 -9.52009 -8.95988 -8.71462 -8.40688 -7.03426 -5.82653 -3.12338 0.17716 0.83227 1.44274 1.59367 1.65850 3.01191 3.21481 3.31372 3.40403 3.44975 3.46629 3.48465 4.35965 4.38887 4.51261 4.54452 4.60087 4.67981 4.84447 4.97020 5.09619 5.10298 5.26283 5.31844 5.43588 5.48524 5.57735 5.60042 5.61810 5.71470 5.81752 5.84860 5.89375 5.99231 6.06658 6.11208 6.17008 6.23278 6.34234 6.54653 6.55729 6.58292 6.71100 6.82859 6.98234 7.47327 7.66033 7.66951 8.19431 8.35752 9.47559 10.02340 10.37481 11.39814 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.002563 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.455140 B =10922.741781 C =12485.565674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 H 0.076 0.924 4 C 0.174 3.826 5 H 0.067 0.933 6 N -0.716 5.716 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C -0.154 4.154 16 C 0.099 3.901 17 N -0.591 5.591 18 C 0.614 3.386 19 O -0.531 6.531 20 C -0.042 4.042 21 C 0.080 3.920 22 N -0.281 5.281 23 N -0.166 5.166 24 C 0.156 3.844 25 C -0.110 4.110 26 C -0.098 4.098 27 C -0.118 4.118 28 C -0.101 4.101 29 C -0.109 4.109 30 N -0.196 5.196 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.391 0.609 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.219 0.781 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.008 -8.491 -21.891 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.094 0.906 4 C 0.062 3.938 5 H 0.085 0.915 6 N -0.359 5.359 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C -0.196 4.196 16 C -0.025 4.025 17 N -0.324 5.324 18 C 0.399 3.601 19 O -0.406 6.406 20 C -0.209 4.209 21 C -0.111 4.111 22 N -0.108 5.108 23 N -0.058 5.058 24 C 0.065 3.935 25 C -0.131 4.131 26 C -0.117 4.117 27 C -0.137 4.137 28 C -0.120 4.120 29 C -0.130 4.130 30 N -0.040 5.040 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.229 0.771 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.235 0.765 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.406 -8.959 -22.191 27.431 hybrid contribution -0.606 0.550 1.071 1.348 sum 12.800 -8.410 -21.120 26.088 Atomic orbital electron populations 1.22023 0.94312 1.02490 1.02953 1.21970 0.95606 0.95865 0.84119 0.90643 1.21194 0.93269 0.92073 0.87276 0.91498 1.42668 1.04489 1.86994 1.01753 1.19292 0.92606 1.42542 0.83019 0.90984 1.24760 0.95243 1.02643 0.98083 1.69669 0.98901 1.57045 1.32203 0.86110 0.77538 0.77257 0.85198 1.20517 1.21828 1.21875 1.23579 1.01692 1.01245 0.93066 1.22549 0.94210 0.88758 0.96941 1.48390 1.49189 1.30357 1.04419 1.16262 0.80423 0.83223 0.80176 1.90804 1.38865 1.28075 1.82869 1.23100 1.04465 0.97650 0.95689 1.25148 0.97080 0.97612 0.91276 1.78001 1.12773 1.04729 1.15323 1.48366 1.35917 1.21522 0.99971 1.17408 0.94895 0.85845 0.95315 1.21037 0.97814 0.95489 0.98808 1.21100 0.97308 0.95712 0.97544 1.21354 0.99696 1.00040 0.92580 1.21065 0.96633 0.94376 0.99915 1.20934 0.99434 0.98021 0.94613 1.73944 1.11355 1.09806 1.08903 0.89904 0.92016 0.92550 0.77108 0.93421 0.90519 0.90745 0.90051 0.91659 0.76451 0.83956 0.84482 0.85097 0.84702 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 7.93 37.16 0.29 -2.69 16 2 C 0.13 2.26 3.48 -66.95 -0.23 2.03 16 3 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 4 C 0.17 3.32 3.49 -66.09 -0.23 3.09 16 5 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 6 N -0.72 -17.11 4.94 -51.65 -0.25 -17.37 16 7 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 11 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 15 C -0.15 -2.55 6.77 -24.59 -0.17 -2.72 16 16 C 0.10 1.41 6.13 -2.53 -0.02 1.39 16 17 N -0.59 -9.50 3.08 -164.15 -0.51 -10.00 16 18 C 0.61 9.93 7.64 -12.37 -0.09 9.83 16 19 O -0.53 -9.63 15.81 5.31 0.08 -9.55 16 20 C -0.04 -0.59 6.94 -82.99 -0.58 -1.16 16 21 C 0.08 0.95 11.91 -16.91 -0.20 0.75 16 22 N -0.28 -3.46 11.90 30.85 0.37 -3.09 16 23 N -0.17 -2.08 4.44 32.48 0.14 -1.94 16 24 C 0.16 1.63 6.74 -83.60 -0.56 1.07 16 25 C -0.11 -0.99 9.61 -39.40 -0.38 -1.37 16 26 C -0.10 -0.65 10.04 -39.61 -0.40 -1.05 16 27 C -0.12 -0.67 10.04 -39.55 -0.40 -1.07 16 28 C -0.10 -0.62 10.04 -39.61 -0.40 -1.02 16 29 C -0.11 -0.92 9.65 -39.40 -0.38 -1.30 16 30 N -0.20 -2.62 8.35 33.29 0.28 -2.34 16 31 H 0.08 1.68 6.76 -51.93 -0.35 1.33 16 32 H 0.06 1.14 6.76 -51.93 -0.35 0.78 16 33 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 34 H 0.39 9.90 5.06 -40.82 -0.21 9.69 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.08 1.11 6.19 -51.93 -0.32 0.79 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.22 1.93 8.06 -52.48 -0.42 1.50 16 41 H 0.14 1.28 7.67 -52.49 -0.40 0.88 16 42 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 44 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 45 H 0.14 1.14 7.67 -52.48 -0.40 0.74 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -31.94 375.49 -8.31 -40.25 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.80 Total: 9.47 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.98 Total: -1.23 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.75 Total: -61.39 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.94 -8.31 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987490989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.632 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds