Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.87591 * 2 1 4 4 C 1.54332 * 109.88444 * 121.02077 * 2 1 3 5 5 H 1.09001 * 110.71550 * 215.76532 * 4 2 1 6 6 N 1.46505 * 110.71747 * 338.85792 * 4 2 1 7 7 C 1.36931 * 119.99788 * 205.00190 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48508 * 109.46872 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 119.99997 * 11 9 7 14 14 H 1.48498 * 109.47018 * 240.00044 * 11 9 7 15 15 C 1.55150 * 102.94391 * 97.22116 * 4 2 1 16 16 C 1.54906 * 101.58255 * 35.50456 * 15 4 2 17 17 N 1.47019 * 109.88069 * 238.82341 * 2 1 3 18 18 C 1.34777 * 125.64806 * 59.56206 * 17 2 1 19 19 O 1.21564 * 120.00045 * 359.97438 * 18 17 2 20 20 C 1.47763 * 120.00236 * 179.97438 * 18 17 2 21 21 C 1.40592 * 126.04607 * 180.02562 * 20 18 17 22 22 N 1.31248 * 106.62922 * 179.97438 * 21 20 18 23 23 N 1.40105 * 107.17656 * 359.97438 * 22 21 20 24 24 C 1.40139 * 125.57171 * 180.02562 * 23 22 21 25 25 C 1.38862 * 120.07055 * 179.69804 * 24 23 22 26 26 C 1.38110 * 119.92785 * 179.78707 * 25 24 23 27 27 C 1.38284 * 120.07104 * 0.46965 * 26 25 24 28 28 C 1.38283 * 120.13846 * 359.78184 * 27 26 25 29 29 C 1.38112 * 120.06688 * 359.97438 * 28 27 26 30 30 N 1.28711 * 108.86209 * 359.73052 * 23 22 21 31 31 H 1.09003 * 109.46741 * 298.98257 * 1 2 3 32 32 H 1.08992 * 109.46874 * 58.98458 * 1 2 3 33 33 H 1.08999 * 109.46961 * 178.98698 * 1 2 3 34 34 H 0.97000 * 119.99792 * 24.99985 * 6 4 2 35 35 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 36 36 H 1.09000 * 111.00256 * 153.57994 * 15 4 2 37 37 H 1.09000 * 111.00472 * 277.42737 * 15 4 2 38 38 H 1.09004 * 110.36727 * 204.15442 * 16 15 4 39 39 H 1.08995 * 110.37119 * 81.82663 * 16 15 4 40 40 H 1.08003 * 126.68952 * 0.02673 * 21 20 18 41 41 H 1.07997 * 120.03279 * 359.97438 * 25 24 23 42 42 H 1.08001 * 119.96057 * 180.25104 * 26 25 24 43 43 H 1.07999 * 119.93179 * 179.76658 * 27 26 25 44 44 H 1.08001 * 119.96686 * 180.02562 * 28 27 26 45 45 H 1.08003 * 120.03397 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7479 1.2437 5 1 2.9640 -0.2791 1.6204 6 7 1.0293 -0.7996 2.2887 7 6 1.3954 -0.9339 3.6013 8 1 2.4403 -1.0014 3.8663 9 6 0.4239 -0.9771 4.5918 10 7 -0.8493 -0.8943 4.2689 11 14 0.9237 -1.1526 6.3832 12 1 2.4038 -1.2254 6.4793 13 1 0.4344 0.0206 7.1508 14 1 0.3301 -2.3932 6.9434 15 6 2.3519 -2.1686 0.6954 16 6 2.8568 -1.8509 -0.7342 17 7 2.0300 -0.7157 -1.1829 18 6 1.7753 -0.3879 -2.4651 19 8 1.0768 0.5740 -2.7194 20 6 2.3451 -1.1977 -3.5620 21 6 2.1634 -0.9718 -4.9377 22 7 2.8333 -1.9106 -5.5641 23 7 3.4296 -2.7166 -4.5855 24 6 4.2360 -3.8359 -4.8317 25 6 4.7758 -4.5515 -3.7710 26 6 5.5665 -5.6568 -4.0170 27 6 5.8289 -6.0454 -5.3179 28 6 5.2971 -5.3319 -6.3763 29 6 4.5015 -4.2286 -6.1369 30 7 3.1208 -2.2573 -3.4234 31 1 -0.3633 0.4980 0.8990 32 1 -0.3633 0.5295 -0.8807 33 1 -0.3633 -1.0275 -0.0182 34 1 0.0910 -0.7385 2.0506 35 1 -1.5282 -0.9248 4.9611 36 1 3.1270 -2.6602 1.2833 37 1 1.4452 -2.7728 0.6642 38 1 2.7087 -2.7100 -1.3886 39 1 3.9091 -1.5678 -0.7107 40 1 1.5858 -0.1796 -5.3908 41 1 4.5749 -4.2457 -2.7549 42 1 5.9832 -6.2160 -3.1924 43 1 6.4506 -6.9079 -5.5076 44 1 5.5035 -5.6381 -7.3912 45 1 4.0868 -3.6715 -6.9640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987490989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = 119.264175 kcal Electronic energy + Delta-G solvation = -29006.514394 eV Core-core repulsion = 25027.066484 eV Total energy + Delta-G solvation = -3979.447911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.89182 -41.24011 -40.12097 -38.88027 -35.98799 -34.97808 -33.99779 -33.13236 -32.14702 -31.96949 -31.02252 -30.13608 -26.81726 -26.30980 -25.36145 -24.68729 -23.88513 -22.81917 -22.39665 -21.26828 -20.17693 -19.45786 -19.34088 -18.28258 -17.68961 -17.28176 -16.93208 -16.80483 -16.35042 -16.30080 -15.90316 -15.50417 -15.36274 -15.06815 -14.81598 -14.55493 -14.47721 -14.00440 -13.93104 -13.65489 -13.44371 -13.25051 -13.10740 -12.90506 -12.86930 -12.69151 -12.58395 -12.30968 -12.09026 -12.00103 -11.95304 -11.92423 -11.61320 -11.55033 -11.36704 -11.21950 -10.91433 -10.06339 -9.80589 -9.37613 -9.00528 -7.92283 -5.21240 -0.61240 0.29659 0.49565 0.74211 0.81446 1.50673 1.51223 1.60976 1.77475 2.05550 2.49289 2.59073 2.71865 3.31960 3.43350 3.67524 3.72334 3.82749 3.84743 3.90458 3.95686 4.16012 4.18972 4.33936 4.35081 4.36663 4.39520 4.41015 4.52971 4.56693 4.66720 4.77307 4.82496 4.87310 5.00546 5.05160 5.19023 5.21453 5.25612 5.27925 5.32902 5.46589 5.47476 5.51027 5.56758 5.91978 6.29072 6.35192 6.54446 6.92188 7.36802 8.09359 8.33654 9.31482 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.002563 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.455140 B =10922.741781 C =12485.565674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.134 3.866 3 H 0.076 0.924 4 C 0.168 3.832 5 H 0.074 0.926 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.082 0.918 9 C -0.076 4.076 10 N -0.970 5.970 11 Si 0.972 3.028 12 H -0.263 1.263 13 H -0.298 1.298 14 H -0.297 1.297 15 C -0.143 4.143 16 C 0.111 3.889 17 N -0.594 5.594 18 C 0.616 3.384 19 O -0.556 6.556 20 C -0.066 4.066 21 C 0.084 3.916 22 N -0.289 5.289 23 N -0.158 5.158 24 C 0.116 3.884 25 C -0.122 4.122 26 C -0.099 4.099 27 C -0.107 4.107 28 C -0.098 4.098 29 C -0.116 4.116 30 N -0.197 5.197 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.381 0.619 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.242 0.758 41 H 0.136 0.864 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.860 -10.406 -23.285 30.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.094 0.906 4 C 0.058 3.942 5 H 0.092 0.908 6 N -0.372 5.372 7 C -0.368 4.368 8 H 0.100 0.900 9 C -0.268 4.268 10 N -0.621 5.621 11 Si 0.802 3.198 12 H -0.187 1.187 13 H -0.225 1.225 14 H -0.224 1.224 15 C -0.184 4.184 16 C -0.012 4.012 17 N -0.326 5.326 18 C 0.403 3.597 19 O -0.433 6.433 20 C -0.231 4.231 21 C -0.106 4.106 22 N -0.116 5.116 23 N -0.051 5.051 24 C 0.026 3.974 25 C -0.143 4.143 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.117 4.117 29 C -0.137 4.137 30 N -0.043 5.043 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.217 0.783 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.259 0.741 41 H 0.154 0.846 42 H 0.178 0.822 43 H 0.181 0.819 44 H 0.181 0.819 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 16.319 -10.886 -23.622 30.705 hybrid contribution -1.346 1.007 1.344 2.152 sum 14.973 -9.878 -22.278 28.602 Atomic orbital electron populations 1.21848 0.95265 1.01456 1.01843 1.21737 0.94697 0.95983 0.84535 0.90610 1.21381 0.92274 0.93875 0.86715 0.90811 1.42830 1.05018 1.87215 1.02120 1.19695 0.92916 1.40049 0.84127 0.89988 1.25545 0.95334 1.03883 1.02023 1.69828 0.99885 1.59431 1.32950 0.85090 0.77956 0.76374 0.80422 1.18693 1.22507 1.22409 1.23388 1.01424 0.99052 0.94563 1.22547 0.94751 0.88538 0.95353 1.48377 1.49484 1.30649 1.04093 1.16471 0.79866 0.83014 0.80374 1.90781 1.39991 1.29252 1.83294 1.22778 1.06129 0.98493 0.95689 1.25531 0.96769 0.97877 0.90449 1.77996 1.13189 1.04968 1.15483 1.48644 1.35277 1.21606 0.99622 1.17865 0.96543 0.86309 0.96692 1.21169 0.98519 0.96352 0.98239 1.21442 0.96428 0.94871 0.99003 1.21797 0.98612 1.00246 0.91850 1.21448 0.95349 0.93194 1.01669 1.21102 0.99941 0.98869 0.93770 1.73844 1.11231 1.09608 1.09614 0.91925 0.91951 0.93552 0.78310 0.94130 0.89073 0.92589 0.89100 0.89645 0.74149 0.84588 0.82190 0.81857 0.81866 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 7.93 71.98 0.57 -5.07 16 2 C 0.13 4.79 3.48 45.34 0.16 4.95 16 3 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 4 C 0.17 6.34 3.49 46.18 0.16 6.50 16 5 H 0.07 2.70 8.09 -2.39 -0.02 2.68 16 6 N -0.73 -35.31 4.94 -317.31 -1.57 -36.88 16 7 C -0.24 -12.52 9.96 84.04 0.84 -11.69 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 10 N -0.97 -58.59 13.06 21.65 0.28 -58.31 16 11 Si 0.97 45.17 29.55 68.60 2.03 47.20 16 12 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 13 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 14 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 15 C -0.14 -4.60 6.77 31.98 0.22 -4.39 16 16 C 0.11 3.01 6.13 86.85 0.53 3.54 16 17 N -0.59 -18.85 3.08 -791.51 -2.44 -21.29 16 18 C 0.62 19.83 7.64 86.76 0.66 20.49 16 19 O -0.56 -20.31 15.81 -3.92 -0.06 -20.37 16 20 C -0.07 -1.82 6.94 42.20 0.29 -1.52 16 21 C 0.08 1.96 11.91 85.35 1.02 2.97 16 22 N -0.29 -6.93 11.90 -56.32 -0.67 -7.60 16 23 N -0.16 -3.86 4.44 -51.14 -0.23 -4.09 16 24 C 0.12 2.30 6.74 38.11 0.26 2.56 16 25 C -0.12 -2.00 9.61 22.39 0.22 -1.78 16 26 C -0.10 -1.02 10.04 22.25 0.22 -0.79 16 27 C -0.11 -0.79 10.04 22.29 0.22 -0.57 16 28 C -0.10 -0.89 10.04 22.25 0.22 -0.67 16 29 C -0.12 -1.77 9.65 22.39 0.22 -1.56 16 30 N -0.20 -5.14 8.35 -48.60 -0.41 -5.55 16 31 H 0.06 2.66 6.76 -2.39 -0.02 2.65 16 32 H 0.06 2.37 6.76 -2.39 -0.02 2.35 16 33 H 0.05 1.84 8.03 -2.39 -0.02 1.82 16 34 H 0.38 19.93 5.06 -92.71 -0.47 19.46 16 35 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 36 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.09 2.36 6.19 -2.38 -0.01 2.35 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.24 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.14 2.31 7.67 -2.91 -0.02 2.29 16 42 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 44 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 45 H 0.14 2.09 7.67 -2.91 -0.02 2.07 16 Total: -1.00 -69.99 375.49 3.77 -66.22 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.56 Total: 31.47 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.27 Total: 9.20 kcal Atomic # 7 Polarization: -128.69 SS G_CDS: -5.03 Total: -133.71 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.06 Total: -20.37 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.99 3.77 -66.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987490989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.485 kcal (2) G-P(sol) polarization free energy of solvation -69.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds