Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.99552 * 2 1 4 4 C 1.54324 * 109.88158 * 238.90709 * 2 1 3 5 5 H 1.09000 * 110.71874 * 336.92723 * 4 2 1 6 6 N 1.46496 * 110.72137 * 100.02835 * 4 2 1 7 7 C 1.36945 * 119.99718 * 202.55765 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55159 * 103.09883 * 218.47763 * 4 2 1 16 16 C 1.54913 * 101.58472 * 35.41043 * 15 4 2 17 17 N 1.47315 * 110.06244 * 121.17111 * 2 1 3 18 18 C 1.34775 * 125.61584 * 298.24310 * 17 2 1 19 19 O 1.21567 * 120.00373 * 359.83949 * 18 17 2 20 20 C 1.47767 * 119.99987 * 179.84416 * 18 17 2 21 21 C 1.40594 * 126.04678 * 179.71929 * 20 18 17 22 22 N 1.31247 * 106.63084 * 179.82417 * 21 20 18 23 23 N 1.40112 * 107.17124 * 0.42148 * 22 21 20 24 24 C 1.40137 * 125.56372 * 179.75893 * 23 22 21 25 25 C 1.38860 * 120.06743 * 179.68333 * 24 23 22 26 26 C 1.38109 * 119.93594 * 179.76914 * 25 24 23 27 27 C 1.38296 * 120.06244 * 0.48116 * 26 25 24 28 28 C 1.38280 * 120.13872 * 359.78923 * 27 26 25 29 29 C 1.38112 * 120.06507 * 359.95985 * 28 27 26 30 30 N 1.28706 * 108.86545 * 359.72220 * 23 22 21 31 31 H 1.09000 * 109.47212 * 181.09677 * 1 2 3 32 32 H 1.09001 * 109.46996 * 301.09597 * 1 2 3 33 33 H 1.09004 * 109.46837 * 61.09562 * 1 2 3 34 34 H 0.96996 * 120.00499 * 22.55496 * 6 4 2 35 35 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 36 36 H 1.08998 * 111.00515 * 153.48428 * 15 4 2 37 37 H 1.09000 * 111.00346 * 277.30076 * 15 4 2 38 38 H 1.09007 * 110.36263 * 81.82420 * 16 15 4 39 39 H 1.08995 * 110.37086 * 204.15203 * 16 15 4 40 40 H 1.08007 * 126.68304 * 359.97438 * 21 20 18 41 41 H 1.08005 * 120.03090 * 0.02562 * 25 24 23 42 42 H 1.07997 * 119.97619 * 180.25248 * 26 25 24 43 43 H 1.07998 * 119.92737 * 179.77253 * 27 26 25 44 44 H 1.07997 * 119.96289 * 179.97438 * 28 27 26 45 45 H 1.08003 * 120.02734 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 1.3039 -1.4436 -1.6201 6 7 2.4555 0.1961 -2.2875 7 6 2.5064 -0.2089 -3.5947 8 1 2.2515 -1.2255 -3.8552 9 6 2.8855 0.6871 -4.5846 10 7 3.1966 1.9260 -4.2670 11 14 2.9555 0.1344 -6.3676 12 1 4.3113 -0.3903 -6.6703 13 1 1.9493 -0.9338 -6.5946 14 1 2.6617 1.2880 -7.2554 15 6 3.2870 -1.5177 -0.6958 16 6 2.8162 -1.8830 0.7341 17 7 2.0354 -0.7162 1.1840 18 6 1.8176 -0.3640 2.4665 19 8 1.1557 0.6232 2.7219 20 6 2.3835 -1.1778 3.5625 21 6 2.2415 -0.9259 4.9383 22 7 2.8884 -1.8813 5.5639 23 7 3.4386 -2.7183 4.5843 24 6 4.2125 -3.8607 4.8293 25 6 4.6968 -4.6137 3.7679 26 6 5.4632 -5.7364 4.0125 27 6 5.7400 -6.1164 5.3131 28 6 5.2544 -5.3718 6.3723 29 6 4.4918 -4.2452 6.1340 30 7 3.1167 -2.2672 3.4227 31 1 -0.3634 -1.0275 0.0197 32 1 -0.3633 0.5308 0.8800 33 1 -0.3633 0.4967 -0.8997 34 1 2.6847 1.1091 -2.0534 35 1 3.4618 2.5520 -4.9588 36 1 3.4811 -2.4144 -1.2842 37 1 4.1665 -0.8746 -0.6657 38 1 2.1880 -2.7736 0.7107 39 1 3.6743 -2.0401 1.3875 40 1 1.7028 -0.1071 5.3921 41 1 4.4780 -4.3194 2.7521 42 1 5.8437 -6.3202 3.1874 43 1 6.3364 -6.9968 5.5018 44 1 5.4719 -5.6714 7.3868 45 1 4.1125 -3.6643 6.9617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987490991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = 112.115019 kcal Electronic energy + Delta-G solvation = -28904.760814 eV Core-core repulsion = 24925.002893 eV Total energy + Delta-G solvation = -3979.757921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.89672 -41.17996 -40.11675 -38.81423 -35.96130 -34.98336 -34.00202 -33.10113 -32.29349 -31.96518 -31.06991 -30.22876 -26.89188 -26.21730 -25.02683 -24.64644 -23.85522 -22.73063 -22.39831 -21.64559 -20.53213 -19.33978 -19.14802 -18.16199 -17.75467 -17.38816 -17.16444 -16.57527 -16.34441 -16.26523 -15.64165 -15.44842 -15.40665 -15.06740 -14.83716 -14.58261 -14.47131 -14.14872 -13.95592 -13.67663 -13.45256 -13.30978 -13.12426 -12.93704 -12.75657 -12.60985 -12.53797 -12.34796 -12.15557 -12.11590 -11.95733 -11.92006 -11.71835 -11.57270 -11.36892 -11.27266 -10.89427 -10.06475 -9.81471 -9.37879 -9.02146 -7.92629 -5.22725 -0.61643 0.29533 0.48985 0.73670 0.81139 1.50532 1.51811 1.60154 1.75899 2.04681 2.48663 2.58637 2.71718 3.31924 3.42407 3.65929 3.70654 3.79482 3.84192 3.88255 4.01584 4.15340 4.19236 4.31730 4.34749 4.36138 4.39232 4.41376 4.50108 4.55325 4.66762 4.73583 4.82022 4.92342 5.00513 5.04022 5.19686 5.21024 5.23402 5.27834 5.32995 5.42268 5.47344 5.50490 5.56121 5.91797 6.27180 6.34470 6.53910 6.91079 7.34248 8.05436 8.29670 9.30815 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.002570 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.009379 B =10890.606699 C =12451.845075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.134 3.866 3 H 0.055 0.945 4 C 0.173 3.827 5 H 0.074 0.926 6 N -0.727 5.727 7 C -0.235 4.235 8 H 0.084 0.916 9 C -0.076 4.076 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.288 1.288 13 H -0.266 1.266 14 H -0.300 1.300 15 C -0.146 4.146 16 C 0.111 3.889 17 N -0.595 5.595 18 C 0.616 3.384 19 O -0.557 6.557 20 C -0.066 4.066 21 C 0.084 3.916 22 N -0.289 5.289 23 N -0.158 5.158 24 C 0.116 3.884 25 C -0.122 4.122 26 C -0.099 4.099 27 C -0.107 4.107 28 C -0.098 4.098 29 C -0.116 4.116 30 N -0.197 5.197 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.372 0.628 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.242 0.758 41 H 0.136 0.864 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -19.037 23.119 30.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.073 0.927 4 C 0.063 3.937 5 H 0.092 0.908 6 N -0.367 5.367 7 C -0.367 4.367 8 H 0.102 0.898 9 C -0.268 4.268 10 N -0.621 5.621 11 Si 0.802 3.198 12 H -0.215 1.215 13 H -0.191 1.191 14 H -0.227 1.227 15 C -0.187 4.187 16 C -0.011 4.011 17 N -0.327 5.327 18 C 0.402 3.598 19 O -0.434 6.434 20 C -0.231 4.231 21 C -0.106 4.106 22 N -0.116 5.116 23 N -0.051 5.051 24 C 0.026 3.974 25 C -0.143 4.143 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.117 4.117 29 C -0.137 4.137 30 N -0.043 5.043 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.258 0.742 41 H 0.154 0.846 42 H 0.178 0.822 43 H 0.182 0.818 44 H 0.181 0.819 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.878 -19.636 23.454 30.833 hybrid contribution -0.392 1.676 -1.290 2.151 sum 3.486 -17.960 22.164 28.740 Atomic orbital electron populations 1.21946 0.93542 1.02551 1.02219 1.21810 0.95292 0.95602 0.84303 0.92691 1.21418 0.94790 0.91063 0.86442 0.90770 1.42508 1.80568 1.10666 1.02917 1.19610 1.36630 0.96169 0.84254 0.89849 1.25569 1.03098 0.95961 1.02144 1.69835 1.54084 1.05015 1.33207 0.85147 0.77838 0.76761 0.80044 1.21501 1.19093 1.22741 1.23416 0.99219 1.01447 0.94651 1.22549 0.95749 0.87516 0.95283 1.48441 1.51317 1.28828 1.04111 1.16486 0.79792 0.83101 0.80406 1.90783 1.41791 1.27601 1.83271 1.22770 1.07166 0.97485 0.95671 1.25529 0.96559 0.98084 0.90454 1.77999 1.14321 1.03846 1.15439 1.48645 1.36566 1.20302 0.99611 1.17861 0.97558 0.85296 0.96706 1.21169 0.98942 0.95945 0.98226 1.21445 0.96308 0.94971 0.99016 1.21801 0.98478 1.00370 0.91844 1.21448 0.95621 0.92919 1.01669 1.21099 0.99920 0.98875 0.93777 1.73840 1.10669 1.10133 1.09651 0.91387 0.92336 0.91702 0.79604 0.94129 0.89019 0.92616 0.89654 0.89077 0.74158 0.84597 0.82182 0.81848 0.81858 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.11 71.98 0.66 -4.11 16 2 C 0.13 4.80 3.22 45.29 0.15 4.94 16 3 H 0.05 2.27 7.70 -2.39 -0.02 2.25 16 4 C 0.17 6.53 3.12 46.18 0.14 6.68 16 5 H 0.07 2.72 7.81 -2.39 -0.02 2.70 16 6 N -0.73 -35.53 5.24 -317.34 -1.66 -37.19 16 7 C -0.24 -12.47 9.97 84.03 0.84 -11.63 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 9 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 10 N -0.97 -58.99 13.06 21.65 0.28 -58.71 16 11 Si 0.97 45.12 29.55 68.60 2.03 47.15 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 15 C -0.15 -4.74 6.77 31.99 0.22 -4.53 16 16 C 0.11 3.06 6.14 86.86 0.53 3.59 16 17 N -0.59 -19.06 3.08 -790.80 -2.43 -21.49 16 18 C 0.62 20.01 7.66 86.76 0.66 20.67 16 19 O -0.56 -20.60 15.98 -3.93 -0.06 -20.66 16 20 C -0.07 -1.83 6.94 42.21 0.29 -1.54 16 21 C 0.08 1.97 11.91 85.36 1.02 2.98 16 22 N -0.29 -6.94 11.90 -56.32 -0.67 -7.61 16 23 N -0.16 -3.87 4.44 -51.15 -0.23 -4.10 16 24 C 0.12 2.30 6.74 38.11 0.26 2.56 16 25 C -0.12 -2.00 9.61 22.39 0.22 -1.79 16 26 C -0.10 -1.02 10.04 22.25 0.22 -0.79 16 27 C -0.11 -0.79 10.04 22.29 0.22 -0.57 16 28 C -0.10 -0.89 10.04 22.25 0.22 -0.67 16 29 C -0.12 -1.77 9.65 22.39 0.22 -1.56 16 30 N -0.20 -5.17 8.35 -48.59 -0.41 -5.57 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.98 6.94 -2.39 -0.02 1.96 16 33 H 0.06 2.22 8.14 -2.38 -0.02 2.21 16 34 H 0.37 20.08 7.53 -92.71 -0.70 19.38 16 35 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 36 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.09 2.39 6.17 -2.39 -0.01 2.37 16 40 H 0.24 4.10 8.06 -2.91 -0.02 4.08 16 41 H 0.14 2.32 7.67 -2.91 -0.02 2.29 16 42 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 44 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 45 H 0.14 2.10 7.67 -2.91 -0.02 2.07 16 Total: -1.00 -70.35 379.94 3.51 -66.85 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.32 Total: 30.88 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 6.33 Total: 10.46 kcal Atomic # 7 Polarization: -129.56 SS G_CDS: -5.11 Total: -134.67 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.06 Total: -20.66 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -70.35 3.51 -66.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987490991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.960 kcal (2) G-P(sol) polarization free energy of solvation -70.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds