Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.99569 * 2 1 4 4 C 1.54325 * 109.78134 * 121.17123 * 2 1 3 5 5 H 1.08999 * 110.51973 * 215.80608 * 4 2 1 6 6 N 1.46498 * 111.00431 * 338.95676 * 4 2 1 7 7 C 1.36936 * 120.00107 * 200.23703 * 6 4 2 8 8 H 1.07995 * 120.00251 * 359.97438 * 7 6 4 9 9 C 1.38820 * 119.99861 * 179.97438 * 7 6 4 10 10 N 1.31609 * 119.99990 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99830 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46890 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47045 * 119.99561 * 11 9 7 14 14 H 1.48496 * 109.47231 * 240.00155 * 11 9 7 15 15 C 1.55160 * 103.02403 * 97.49551 * 4 2 1 16 16 C 1.54909 * 101.58039 * 35.30358 * 15 4 2 17 17 N 1.47026 * 109.87797 * 238.91100 * 2 1 3 18 18 C 1.34775 * 125.65145 * 59.55432 * 17 2 1 19 19 O 1.21517 * 119.99655 * 3.39407 * 18 17 2 20 20 C 1.48153 * 120.00585 * 183.38656 * 18 17 2 21 21 C 1.39951 * 120.89191 * 334.73096 * 20 18 17 22 22 C 1.38039 * 119.13963 * 180.02562 * 21 20 18 23 23 N 1.31854 * 120.98039 * 359.97093 * 22 21 20 24 24 C 1.32223 * 121.96975 * 0.02562 * 23 22 21 25 25 N 1.39854 * 119.62316 * 180.02562 * 24 23 22 26 26 C 1.37175 * 126.48482 * 359.97438 * 25 24 23 27 27 C 1.34619 * 106.82841 * 179.97438 * 26 25 24 28 28 N 1.34150 * 108.21406 * 0.02562 * 27 26 25 29 29 C 1.30478 * 109.37445 * 359.97438 * 28 27 26 30 30 C 1.38910 * 120.75422 * 0.27479 * 24 23 22 31 31 H 1.09001 * 109.47157 * 179.64000 * 1 2 3 32 32 H 1.09001 * 109.47204 * 299.63447 * 1 2 3 33 33 H 1.08997 * 109.47741 * 59.63856 * 1 2 3 34 34 H 0.97006 * 120.00294 * 20.23409 * 6 4 2 35 35 H 0.97001 * 119.99974 * 180.02562 * 10 9 7 36 36 H 1.09006 * 111.00439 * 277.23423 * 15 4 2 37 37 H 1.08996 * 111.00844 * 153.38058 * 15 4 2 38 38 H 1.08998 * 110.36968 * 204.15220 * 16 15 4 39 39 H 1.09000 * 110.36661 * 81.83482 * 16 15 4 40 40 H 1.08006 * 120.42690 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.51005 * 180.02562 * 22 21 20 42 42 H 1.08006 * 126.58520 * 0.24327 * 26 25 24 43 43 H 1.07996 * 125.89221 * 180.02562 * 27 26 25 44 44 H 1.08006 * 125.72209 * 180.02562 * 29 28 27 45 45 H 1.07999 * 120.52798 * 179.72483 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0523 -0.7516 1.2425 5 1 2.9606 -0.2817 1.6195 6 7 1.0289 -0.8108 2.2891 7 6 1.3910 -1.0483 3.5882 8 1 2.4310 -1.1925 3.8412 9 6 0.4212 -1.1039 4.5799 10 7 -0.8461 -0.9277 4.2717 11 14 0.9151 -1.4286 6.3520 12 1 2.3890 -1.5911 6.4332 13 1 0.4953 -0.2845 7.2005 14 1 0.2538 -2.6690 6.8308 15 6 2.3562 -2.1698 0.6912 16 6 2.8612 -1.8465 -0.7371 17 7 2.0299 -0.7140 -1.1841 18 6 1.7751 -0.3843 -2.4658 19 8 1.1288 0.6129 -2.7197 20 6 2.2832 -1.2375 -3.5653 21 6 3.4135 -2.0431 -3.3860 22 6 3.8559 -2.8236 -4.4352 23 7 3.2298 -2.8190 -5.5956 24 6 2.1586 -2.0742 -5.8102 25 7 1.5325 -2.1076 -7.0603 26 6 1.9148 -2.8565 -8.1442 27 6 1.0400 -2.5878 -9.1316 28 7 0.1464 -1.7000 -8.6700 29 6 0.4300 -1.4045 -7.4312 30 6 1.6510 -1.2549 -4.8098 31 1 -0.3633 -1.0277 -0.0065 32 1 -0.3634 0.5081 0.8932 33 1 -0.3634 0.5194 -0.8867 34 1 0.0947 -0.6817 2.0619 35 1 -1.5236 -0.9662 4.9648 36 1 1.4522 -2.7779 0.6576 37 1 3.1328 -2.6593 1.2787 38 1 2.7177 -2.7047 -1.3936 39 1 3.9123 -1.5589 -0.7118 40 1 3.9333 -2.0534 -2.4394 41 1 4.7273 -3.4478 -4.3033 42 1 2.7536 -3.5350 -8.1943 43 1 1.0550 -3.0135 -10.1240 44 1 -0.1193 -0.7167 -6.8053 45 1 0.7784 -0.6448 -4.9905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987550523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = 115.362064 kcal Electronic energy + Delta-G solvation = -28873.440058 eV Core-core repulsion = 24893.822939 eV Total energy + Delta-G solvation = -3979.617119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.71125 -41.04777 -39.72926 -37.70840 -34.92384 -34.26730 -33.27537 -31.72935 -30.99828 -30.48800 -29.65005 -29.04211 -25.59525 -25.40738 -24.56261 -23.50698 -22.93406 -21.68157 -21.30466 -20.39686 -19.24717 -18.64513 -17.61379 -17.30143 -16.60658 -16.24430 -16.17779 -15.80701 -15.70901 -15.01614 -14.78862 -14.37824 -14.26478 -14.19648 -14.03694 -13.85242 -13.75049 -13.50094 -13.12426 -12.71868 -12.60948 -12.22811 -11.88030 -11.61656 -11.40304 -11.17875 -11.06721 -10.90668 -10.64168 -10.60430 -10.49351 -10.40174 -10.29737 -10.07242 -9.89963 -9.75004 -9.23736 -9.05459 -8.85207 -8.68645 -7.13382 -5.91022 -3.21577 0.10482 0.32204 1.75498 1.97778 2.59718 2.74892 2.78768 3.33084 3.34635 3.40317 3.42895 3.74250 3.96119 4.15231 4.27373 4.38575 4.43863 4.46413 4.73780 4.81255 4.93370 5.04106 5.06819 5.13359 5.16210 5.29110 5.32718 5.38888 5.48429 5.50351 5.62449 5.71492 5.80793 5.88033 5.95770 6.06522 6.13806 6.31026 6.38181 6.40475 6.51450 6.66890 6.70150 6.82901 7.21432 7.41047 7.57798 7.61376 7.94278 8.27016 9.39061 9.92582 10.27158 11.31281 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.002179 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.856347 B =12846.341191 C =13347.888239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 H 0.077 0.923 4 C 0.174 3.826 5 H 0.065 0.935 6 N -0.717 5.717 7 C -0.247 4.247 8 H 0.073 0.927 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.155 4.155 16 C 0.084 3.916 17 N -0.595 5.595 18 C 0.568 3.432 19 O -0.526 6.526 20 C -0.045 4.045 21 C -0.165 4.165 22 C 0.133 3.867 23 N -0.487 5.487 24 C 0.342 3.658 25 N -0.411 5.411 26 C -0.027 4.027 27 C -0.031 4.031 28 N -0.478 5.478 29 C 0.196 3.804 30 C -0.127 4.127 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.391 0.609 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.164 0.836 41 H 0.175 0.825 42 H 0.182 0.818 43 H 0.177 0.823 44 H 0.213 0.787 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.228 -4.670 -19.976 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 H 0.095 0.905 4 C 0.062 3.938 5 H 0.083 0.917 6 N -0.360 5.360 7 C -0.378 4.378 8 H 0.091 0.909 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.196 4.196 16 C -0.039 4.039 17 N -0.328 5.328 18 C 0.355 3.645 19 O -0.403 6.403 20 C -0.057 4.057 21 C -0.186 4.186 22 C -0.025 4.025 23 N -0.200 5.200 24 C 0.114 3.886 25 N -0.093 5.093 26 C -0.156 4.156 27 C -0.175 4.175 28 N -0.194 5.194 29 C -0.085 4.085 30 C -0.150 4.150 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.229 0.771 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.181 0.819 41 H 0.192 0.808 42 H 0.200 0.800 43 H 0.194 0.806 44 H 0.230 0.770 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.591 -4.328 -21.066 23.548 hybrid contribution 0.383 -0.165 2.032 2.074 sum 9.973 -4.494 -19.035 21.954 Atomic orbital electron populations 1.22015 0.94238 1.02636 1.02920 1.21942 0.95651 0.95927 0.83945 0.90473 1.21173 0.93398 0.91939 0.87280 0.91730 1.42662 1.05081 1.85281 1.02970 1.19259 0.93042 1.41557 0.83899 0.90941 1.24774 0.95298 1.02304 0.98241 1.69659 0.99375 1.56086 1.32557 0.86103 0.77557 0.77478 0.84898 1.20481 1.21773 1.21809 1.23617 1.01956 1.01534 0.92523 1.22846 0.94419 0.88706 0.97899 1.48482 1.49252 1.30401 1.04669 1.17613 0.80665 0.84883 0.81301 1.90803 1.40050 1.26394 1.83059 1.20234 0.95470 0.96096 0.93898 1.23059 0.96989 0.96289 1.02257 1.22615 0.97768 0.96085 0.86045 1.66845 1.07121 1.20706 1.25284 1.17986 0.91586 0.94370 0.84673 1.43135 1.23232 1.34276 1.08650 1.22933 1.04122 1.01820 0.86725 1.22426 0.94290 1.00510 1.00307 1.70357 1.26095 1.15099 1.07888 1.25459 0.88940 1.00246 0.93891 1.21586 1.02340 0.99576 0.91452 0.92339 0.89845 0.92175 0.77085 0.93329 0.90445 0.90209 0.90443 0.90822 0.81869 0.80779 0.80039 0.80614 0.77011 0.82834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 7.94 37.16 0.30 -2.47 16 2 C 0.13 2.04 3.47 -66.95 -0.23 1.81 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.17 3.01 3.44 -66.09 -0.23 2.78 16 5 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 6 N -0.72 -16.22 5.02 -51.65 -0.26 -16.47 16 7 C -0.25 -6.29 9.98 -15.06 -0.15 -6.44 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -26.63 13.06 55.49 0.72 -25.90 16 11 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 C -0.15 -2.20 6.77 -24.58 -0.17 -2.37 16 16 C 0.08 0.89 5.03 -2.53 -0.01 0.88 16 17 N -0.60 -7.96 3.08 -164.00 -0.51 -8.46 16 18 C 0.57 7.83 7.46 -12.19 -0.09 7.74 16 19 O -0.53 -8.87 15.72 5.35 0.08 -8.78 16 20 C -0.05 -0.49 5.75 -104.68 -0.60 -1.09 16 21 C -0.17 -1.32 8.06 -39.01 -0.31 -1.63 16 22 C 0.13 0.97 11.17 -17.61 -0.20 0.77 16 23 N -0.49 -4.72 9.86 -12.34 -0.12 -4.84 16 24 C 0.34 3.56 7.50 -154.42 -1.16 2.40 16 25 N -0.41 -4.28 2.98 -63.84 -0.19 -4.47 16 26 C -0.03 -0.25 11.17 -16.44 -0.18 -0.44 16 27 C -0.03 -0.30 11.85 -17.82 -0.21 -0.51 16 28 N -0.48 -5.60 11.24 -14.47 -0.16 -5.77 16 29 C 0.20 2.02 11.90 -89.59 -1.07 0.95 16 30 C -0.13 -1.33 9.07 -38.83 -0.35 -1.68 16 31 H 0.06 1.04 8.06 -51.93 -0.42 0.62 16 32 H 0.08 1.59 6.74 -51.93 -0.35 1.24 16 33 H 0.06 1.03 6.85 -51.93 -0.36 0.67 16 34 H 0.39 9.44 4.97 -40.82 -0.20 9.24 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.68 6.05 -51.93 -0.31 0.36 16 39 H 0.07 0.60 7.37 -51.93 -0.38 0.22 16 40 H 0.16 1.00 4.53 -52.48 -0.24 0.76 16 41 H 0.18 0.66 8.06 -52.49 -0.42 0.23 16 42 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 43 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.21 1.57 7.04 -52.48 -0.37 1.20 16 45 H 0.15 1.49 6.62 -52.49 -0.35 1.14 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -32.73 369.00 -10.14 -42.88 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.48 Total: 9.74 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -4.77 Total: 0.35 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -0.51 Total: -65.92 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.78 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.73 -10.14 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987550523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.239 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds