Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.99569 * 2 1 4 4 C 1.54325 * 109.78134 * 121.17123 * 2 1 3 5 5 H 1.08999 * 110.51973 * 215.80608 * 4 2 1 6 6 N 1.46498 * 111.00431 * 338.95676 * 4 2 1 7 7 C 1.36936 * 120.00107 * 200.23703 * 6 4 2 8 8 H 1.07995 * 120.00251 * 359.97438 * 7 6 4 9 9 C 1.38820 * 119.99861 * 179.97438 * 7 6 4 10 10 N 1.31609 * 119.99990 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99830 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46890 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47045 * 119.99561 * 11 9 7 14 14 H 1.48496 * 109.47231 * 240.00155 * 11 9 7 15 15 C 1.55160 * 103.02403 * 97.49551 * 4 2 1 16 16 C 1.54909 * 101.58039 * 35.30358 * 15 4 2 17 17 N 1.47026 * 109.87797 * 238.91100 * 2 1 3 18 18 C 1.34775 * 125.65145 * 59.55432 * 17 2 1 19 19 O 1.21517 * 119.99655 * 3.39407 * 18 17 2 20 20 C 1.48153 * 120.00585 * 183.38656 * 18 17 2 21 21 C 1.39951 * 120.89191 * 334.73096 * 20 18 17 22 22 C 1.38039 * 119.13963 * 180.02562 * 21 20 18 23 23 N 1.31854 * 120.98039 * 359.97093 * 22 21 20 24 24 C 1.32223 * 121.96975 * 0.02562 * 23 22 21 25 25 N 1.39854 * 119.62316 * 180.02562 * 24 23 22 26 26 C 1.37175 * 126.48482 * 359.97438 * 25 24 23 27 27 C 1.34619 * 106.82841 * 179.97438 * 26 25 24 28 28 N 1.34150 * 108.21406 * 0.02562 * 27 26 25 29 29 C 1.30478 * 109.37445 * 359.97438 * 28 27 26 30 30 C 1.38910 * 120.75422 * 0.27479 * 24 23 22 31 31 H 1.09001 * 109.47157 * 179.64000 * 1 2 3 32 32 H 1.09001 * 109.47204 * 299.63447 * 1 2 3 33 33 H 1.08997 * 109.47741 * 59.63856 * 1 2 3 34 34 H 0.97006 * 120.00294 * 20.23409 * 6 4 2 35 35 H 0.97001 * 119.99974 * 180.02562 * 10 9 7 36 36 H 1.09006 * 111.00439 * 277.23423 * 15 4 2 37 37 H 1.08996 * 111.00844 * 153.38058 * 15 4 2 38 38 H 1.08998 * 110.36968 * 204.15220 * 16 15 4 39 39 H 1.09000 * 110.36661 * 81.83482 * 16 15 4 40 40 H 1.08006 * 120.42690 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.51005 * 180.02562 * 22 21 20 42 42 H 1.08006 * 126.58520 * 0.24327 * 26 25 24 43 43 H 1.07996 * 125.89221 * 180.02562 * 27 26 25 44 44 H 1.08006 * 125.72209 * 180.02562 * 29 28 27 45 45 H 1.07999 * 120.52798 * 179.72483 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0523 -0.7516 1.2425 5 1 2.9606 -0.2817 1.6195 6 7 1.0289 -0.8108 2.2891 7 6 1.3910 -1.0483 3.5882 8 1 2.4310 -1.1925 3.8412 9 6 0.4212 -1.1039 4.5799 10 7 -0.8461 -0.9277 4.2717 11 14 0.9151 -1.4286 6.3520 12 1 2.3890 -1.5911 6.4332 13 1 0.4953 -0.2845 7.2005 14 1 0.2538 -2.6690 6.8308 15 6 2.3562 -2.1698 0.6912 16 6 2.8612 -1.8465 -0.7371 17 7 2.0299 -0.7140 -1.1841 18 6 1.7751 -0.3843 -2.4658 19 8 1.1288 0.6129 -2.7197 20 6 2.2832 -1.2375 -3.5653 21 6 3.4135 -2.0431 -3.3860 22 6 3.8559 -2.8236 -4.4352 23 7 3.2298 -2.8190 -5.5956 24 6 2.1586 -2.0742 -5.8102 25 7 1.5325 -2.1076 -7.0603 26 6 1.9148 -2.8565 -8.1442 27 6 1.0400 -2.5878 -9.1316 28 7 0.1464 -1.7000 -8.6700 29 6 0.4300 -1.4045 -7.4312 30 6 1.6510 -1.2549 -4.8098 31 1 -0.3633 -1.0277 -0.0065 32 1 -0.3634 0.5081 0.8932 33 1 -0.3634 0.5194 -0.8867 34 1 0.0947 -0.6817 2.0619 35 1 -1.5236 -0.9662 4.9648 36 1 1.4522 -2.7779 0.6576 37 1 3.1328 -2.6593 1.2787 38 1 2.7177 -2.7047 -1.3936 39 1 3.9123 -1.5589 -0.7118 40 1 3.9333 -2.0534 -2.4394 41 1 4.7273 -3.4478 -4.3033 42 1 2.7536 -3.5350 -8.1943 43 1 1.0550 -3.0135 -10.1240 44 1 -0.1193 -0.7167 -6.8053 45 1 0.7784 -0.6448 -4.9905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987550523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = 96.441641 kcal Electronic energy + Delta-G solvation = -28874.260509 eV Core-core repulsion = 24893.822939 eV Total energy + Delta-G solvation = -3980.437570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.44150 -41.95477 -40.67589 -38.92941 -36.13459 -35.39118 -34.21551 -33.22679 -32.19804 -31.34074 -30.54541 -30.35090 -26.93442 -26.39334 -25.55313 -24.97483 -23.92803 -22.52121 -22.07384 -21.33142 -20.44436 -19.62397 -19.36489 -18.22985 -17.41326 -17.14263 -17.06466 -16.83765 -16.68448 -16.41360 -15.97741 -15.51401 -15.44100 -15.01094 -14.93399 -14.80185 -14.71010 -14.50456 -14.44353 -13.96384 -13.67754 -13.49787 -13.14914 -12.93846 -12.90884 -12.89612 -12.46694 -12.08394 -12.00764 -11.91016 -11.64181 -11.55413 -11.40470 -11.27707 -11.19161 -10.93170 -10.77207 -9.94763 -9.80529 -9.55432 -9.00087 -7.93075 -5.21734 -0.63189 -0.39131 1.04516 1.24956 1.50389 1.51134 1.60443 1.61902 1.76135 2.02026 2.57910 2.60256 3.00965 3.19632 3.39570 3.44345 3.59482 3.61327 3.73314 3.77937 3.81781 3.92486 4.13224 4.18192 4.26765 4.34427 4.37537 4.43259 4.50654 4.54360 4.59917 4.61691 4.70375 4.79576 4.84757 5.01402 5.02407 5.20845 5.21234 5.25149 5.29572 5.49493 5.57476 5.62867 5.98449 6.28650 6.35892 6.54670 6.87355 6.87904 7.36323 8.10300 8.32342 9.30771 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.002179 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.856347 B =12846.341191 C =13347.888239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.135 3.865 3 H 0.073 0.927 4 C 0.165 3.835 5 H 0.073 0.927 6 N -0.733 5.733 7 C -0.233 4.233 8 H 0.085 0.915 9 C -0.078 4.078 10 N -0.971 5.971 11 Si 0.971 3.029 12 H -0.260 1.260 13 H -0.300 1.300 14 H -0.298 1.298 15 C -0.146 4.146 16 C 0.089 3.911 17 N -0.595 5.595 18 C 0.568 3.432 19 O -0.567 6.567 20 C -0.060 4.060 21 C -0.149 4.149 22 C 0.143 3.857 23 N -0.495 5.495 24 C 0.331 3.669 25 N -0.415 5.415 26 C -0.029 4.029 27 C -0.042 4.042 28 N -0.509 5.509 29 C 0.186 3.814 30 C -0.135 4.135 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.380 0.620 35 H 0.249 0.751 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.190 0.810 41 H 0.219 0.781 42 H 0.201 0.799 43 H 0.199 0.801 44 H 0.229 0.771 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.816 -6.461 -20.721 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.031 3.969 3 H 0.091 0.909 4 C 0.055 3.945 5 H 0.091 0.909 6 N -0.376 5.376 7 C -0.364 4.364 8 H 0.103 0.897 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.800 3.200 12 H -0.184 1.184 13 H -0.228 1.228 14 H -0.226 1.226 15 C -0.187 4.187 16 C -0.032 4.032 17 N -0.327 5.327 18 C 0.357 3.643 19 O -0.447 6.447 20 C -0.072 4.072 21 C -0.169 4.169 22 C -0.015 4.015 23 N -0.208 5.208 24 C 0.104 3.896 25 N -0.098 5.098 26 C -0.158 4.158 27 C -0.186 4.186 28 N -0.227 5.227 29 C -0.095 4.095 30 C -0.158 4.158 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.215 0.785 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.207 0.793 41 H 0.235 0.765 42 H 0.218 0.782 43 H 0.215 0.785 44 H 0.245 0.755 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.253 -6.145 -21.852 26.285 hybrid contribution -0.650 0.392 2.179 2.308 sum 12.603 -5.754 -19.672 24.061 Atomic orbital electron populations 1.21839 0.95764 1.01478 1.01463 1.21654 0.94306 0.96050 0.84866 0.90902 1.21414 0.92209 0.94337 0.86525 0.90929 1.42862 1.05746 1.85499 1.03473 1.19685 0.93316 1.38450 0.84994 0.89726 1.25546 0.95442 1.03990 1.02020 1.69819 1.00367 1.58904 1.33141 0.85108 0.78053 0.76347 0.80443 1.18447 1.22780 1.22570 1.23414 1.01686 0.98602 0.95022 1.23105 0.95691 0.88719 0.95706 1.48451 1.49481 1.30827 1.03903 1.18057 0.79871 0.84657 0.81749 1.90782 1.41887 1.28321 1.83669 1.20004 0.97170 0.97152 0.92829 1.23326 0.95404 0.94675 1.03504 1.23363 0.98037 0.95411 0.84691 1.66940 1.06843 1.20503 1.26509 1.18010 0.92152 0.94890 0.84569 1.43234 1.23244 1.34325 1.08982 1.23288 1.04468 1.01773 0.86320 1.22880 0.93995 1.00269 1.01468 1.70348 1.27297 1.16275 1.08762 1.25823 0.89230 1.00512 0.93920 1.21576 1.02597 0.99943 0.91732 0.93307 0.92249 0.92499 0.78453 0.94220 0.92712 0.88613 0.87607 0.86792 0.79320 0.76482 0.78228 0.78455 0.75482 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 7.94 71.98 0.57 -4.72 16 2 C 0.14 4.24 3.47 45.34 0.16 4.39 16 3 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.16 5.49 3.44 46.18 0.16 5.65 16 5 H 0.07 2.32 8.12 -2.39 -0.02 2.30 16 6 N -0.73 -33.38 5.02 -317.32 -1.59 -34.98 16 7 C -0.23 -11.77 9.98 84.04 0.84 -10.93 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 C -0.08 -4.23 5.50 84.87 0.47 -3.77 16 10 N -0.97 -57.42 13.06 21.65 0.28 -57.14 16 11 Si 0.97 43.88 29.55 68.60 2.03 45.91 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 13 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 14 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 15 C -0.15 -3.75 6.77 31.99 0.22 -3.53 16 16 C 0.09 1.49 5.03 86.85 0.44 1.93 16 17 N -0.59 -14.67 3.08 -791.08 -2.44 -17.11 16 18 C 0.57 14.91 7.46 86.88 0.65 15.56 16 19 O -0.57 -19.29 15.72 -3.77 -0.06 -19.35 16 20 C -0.06 -1.16 5.75 -19.90 -0.11 -1.28 16 21 C -0.15 -1.69 8.06 22.64 0.18 -1.51 16 22 C 0.14 1.39 11.17 84.64 0.95 2.33 16 23 N -0.50 -7.97 9.86 -192.95 -1.90 -9.87 16 24 C 0.33 6.33 7.50 132.77 1.00 7.32 16 25 N -0.42 -8.27 2.98 -355.89 -1.06 -9.33 16 26 C -0.03 -0.52 11.17 83.03 0.93 0.41 16 27 C -0.04 -0.79 11.85 83.51 0.99 0.20 16 28 N -0.51 -11.92 11.24 -199.68 -2.24 -14.17 16 29 C 0.19 3.83 11.90 179.99 2.14 5.97 16 30 C -0.14 -2.70 9.07 22.76 0.21 -2.49 16 31 H 0.05 1.80 8.06 -2.39 -0.02 1.78 16 32 H 0.06 2.40 6.74 -2.39 -0.02 2.39 16 33 H 0.06 2.04 6.85 -2.39 -0.02 2.03 16 34 H 0.38 18.97 4.97 -92.70 -0.46 18.51 16 35 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.10 2.17 8.14 -2.39 -0.02 2.16 16 38 H 0.11 1.27 6.05 -2.39 -0.01 1.26 16 39 H 0.11 1.13 7.37 -2.39 -0.02 1.11 16 40 H 0.19 1.09 4.53 -2.91 -0.01 1.08 16 41 H 0.22 0.18 8.06 -2.91 -0.02 0.16 16 42 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.20 2.50 8.06 -2.91 -0.02 2.47 16 44 H 0.23 3.49 7.04 -2.91 -0.02 3.47 16 45 H 0.15 2.97 6.62 -2.91 -0.02 2.95 16 Total: -1.00 -74.25 369.00 3.36 -70.89 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.58 Total: 29.61 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 9.77 Total: 15.54 kcal Atomic # 7 Polarization: -133.64 SS G_CDS: -8.96 Total: -142.59 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.06 Total: -19.35 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -74.25 3.36 -70.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987550523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.329 kcal (2) G-P(sol) polarization free energy of solvation -74.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds