Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.99336 * 2 1 4 4 C 1.54329 * 109.99606 * 238.97050 * 2 1 3 5 5 H 1.09007 * 110.51001 * 336.96716 * 4 2 1 6 6 N 1.46499 * 110.85534 * 100.19011 * 4 2 1 7 7 C 1.36939 * 120.00016 * 200.14963 * 6 4 2 8 8 H 1.08006 * 119.99878 * 359.97438 * 7 6 4 9 9 C 1.38810 * 119.99962 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00082 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00196 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46727 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47211 * 119.99820 * 11 9 7 14 14 H 1.48504 * 109.47056 * 240.00298 * 11 9 7 15 15 C 1.55159 * 103.02151 * 218.66559 * 4 2 1 16 16 C 1.54907 * 101.58418 * 35.29940 * 15 4 2 17 17 N 1.47014 * 109.88622 * 121.09275 * 2 1 3 18 18 C 1.34777 * 125.65102 * 298.40364 * 17 2 1 19 19 O 1.21516 * 119.99755 * 175.28107 * 18 17 2 20 20 C 1.48157 * 119.99894 * 355.54921 * 18 17 2 21 21 C 1.39945 * 120.88954 * 355.83883 * 20 18 17 22 22 C 1.38047 * 119.13059 * 179.77445 * 21 20 18 23 23 N 1.31857 * 120.98304 * 0.50763 * 22 21 20 24 24 C 1.32225 * 121.97032 * 359.74446 * 23 22 21 25 25 N 1.39844 * 119.62107 * 180.02562 * 24 23 22 26 26 C 1.37170 * 126.49045 * 4.69479 * 25 24 23 27 27 C 1.34621 * 106.83381 * 179.84149 * 26 25 24 28 28 N 1.34154 * 108.21140 * 0.42254 * 27 26 25 29 29 C 1.30484 * 109.37218 * 359.72923 * 28 27 26 30 30 C 1.38910 * 120.75116 * 359.97438 * 24 23 22 31 31 H 1.09002 * 109.47262 * 282.83609 * 1 2 3 32 32 H 1.08997 * 109.47342 * 42.84430 * 1 2 3 33 33 H 1.09005 * 109.46707 * 162.84147 * 1 2 3 34 34 H 0.96990 * 119.99964 * 20.14948 * 6 4 2 35 35 H 0.96996 * 120.00179 * 179.97438 * 10 9 7 36 36 H 1.09002 * 110.99766 * 277.22856 * 15 4 2 37 37 H 1.09000 * 111.00741 * 153.37861 * 15 4 2 38 38 H 1.09000 * 110.36869 * 204.16190 * 16 15 4 39 39 H 1.08992 * 110.36603 * 81.83383 * 16 15 4 40 40 H 1.07996 * 120.43277 * 0.02562 * 21 20 18 41 41 H 1.08006 * 119.50825 * 180.23339 * 22 21 20 42 42 H 1.08003 * 126.58136 * 359.97019 * 26 25 24 43 43 H 1.07999 * 125.89169 * 180.15260 * 27 26 25 44 44 H 1.08004 * 125.71852 * 179.97438 * 29 28 27 45 45 H 1.07994 * 120.52528 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7476 -1.2427 5 1 1.3054 -1.4405 -1.6197 6 7 2.4637 0.1971 -2.2863 7 6 2.5654 -0.2210 -3.5863 8 1 2.3468 -1.2473 -3.8422 9 6 2.9506 0.6740 -4.5750 10 7 3.2175 1.9245 -4.2631 11 14 3.0901 0.1036 -6.3483 12 1 2.7395 -1.3369 -6.4339 13 1 2.1597 0.8913 -7.1964 14 1 4.4827 0.3027 -6.8242 15 6 3.2865 -1.5182 -0.6915 16 6 2.8101 -1.8824 0.7368 17 7 2.0301 -0.7139 1.1839 18 6 1.8074 -0.3620 2.4657 19 8 2.1987 -1.0753 3.3683 20 6 1.0803 0.8915 2.7741 21 6 0.6923 1.7667 1.7534 22 6 0.0122 2.9224 2.0815 23 7 -0.2651 3.2135 3.3372 24 6 0.0863 2.4191 4.3341 25 7 -0.2335 2.7758 5.6479 26 6 -0.9774 3.8592 6.0410 27 6 -1.0414 3.8212 7.3851 28 7 -0.3497 2.7522 7.8077 29 6 0.1390 2.1179 6.7775 30 6 0.7685 1.2337 4.0911 31 1 -0.3634 0.2283 1.0020 32 1 -0.3634 0.7535 -0.6988 33 1 -0.3633 -0.9820 -0.3032 34 1 2.6603 1.1186 -2.0564 35 1 3.4870 2.5498 -4.9539 36 1 4.1670 -0.8766 -0.6579 37 1 3.4809 -2.4153 -1.2792 38 1 3.6657 -2.0410 1.3932 39 1 2.1804 -2.7717 0.7114 40 1 0.9184 1.5390 0.7222 41 1 -0.2934 3.6004 1.2982 42 1 -1.4274 4.5992 5.3958 43 1 -1.5566 4.5314 8.0148 44 1 0.7392 1.2208 6.8159 45 1 1.0540 0.5877 4.9080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987550524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = 132.688885 kcal Electronic energy + Delta-G solvation = -29215.114803 eV Core-core repulsion = 25236.249032 eV Total energy + Delta-G solvation = -3978.865771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.63833 -41.23043 -39.59640 -37.86699 -34.89815 -34.24133 -33.37790 -31.76584 -31.66201 -30.05737 -29.52785 -29.29586 -25.78922 -25.10332 -24.43562 -23.35059 -22.79568 -21.55031 -21.17677 -20.54749 -19.95732 -18.71372 -17.47428 -17.27039 -16.68459 -16.24165 -16.00714 -15.87901 -15.55708 -14.97737 -14.79090 -14.29032 -14.22377 -14.16093 -13.98927 -13.79594 -13.63690 -13.42738 -13.28771 -12.93359 -12.47607 -12.38077 -11.92267 -11.73085 -11.48076 -11.26014 -10.99219 -10.97739 -10.77790 -10.52405 -10.48221 -10.41794 -10.25380 -10.17815 -9.92664 -9.82333 -9.12871 -9.07266 -8.74981 -8.72193 -7.21742 -5.97781 -3.29085 0.21258 0.42032 1.84164 2.07630 2.68040 2.74962 2.83613 3.30957 3.37517 3.39508 3.46899 3.85302 4.01685 4.25752 4.35117 4.40140 4.50259 4.54298 4.71293 4.80368 4.94153 5.02479 5.14661 5.17226 5.23108 5.28150 5.30520 5.38950 5.42571 5.52750 5.57090 5.62617 5.78644 5.81645 5.95668 6.00900 6.02431 6.05739 6.21357 6.26277 6.38246 6.42692 6.70905 6.79036 7.34911 7.36022 7.52578 7.68117 7.90687 8.18884 9.31386 9.81863 10.16424 11.24161 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020259 B = 0.002492 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.755466 B =11233.912265 C =12284.237952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 H 0.094 0.906 4 C 0.179 3.821 5 H 0.070 0.930 6 N -0.714 5.714 7 C -0.246 4.246 8 H 0.074 0.926 9 C -0.007 4.007 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.291 1.291 15 C -0.157 4.157 16 C 0.107 3.893 17 N -0.595 5.595 18 C 0.573 3.427 19 O -0.535 6.535 20 C -0.058 4.058 21 C -0.176 4.176 22 C 0.128 3.872 23 N -0.482 5.482 24 C 0.332 3.668 25 N -0.408 5.408 26 C -0.025 4.025 27 C -0.033 4.033 28 N -0.479 5.479 29 C 0.194 3.806 30 C -0.123 4.123 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.385 0.615 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.191 0.809 41 H 0.177 0.823 42 H 0.182 0.818 43 H 0.176 0.824 44 H 0.212 0.788 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 0.149 14.649 16.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.003 4.003 3 H 0.112 0.888 4 C 0.067 3.933 5 H 0.087 0.913 6 N -0.355 5.355 7 C -0.377 4.377 8 H 0.092 0.908 9 C -0.204 4.204 10 N -0.576 5.576 11 Si 0.739 3.261 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.218 1.218 15 C -0.198 4.198 16 C -0.015 4.015 17 N -0.327 5.327 18 C 0.360 3.640 19 O -0.413 6.413 20 C -0.069 4.069 21 C -0.196 4.196 22 C -0.030 4.030 23 N -0.195 5.195 24 C 0.104 3.896 25 N -0.090 5.090 26 C -0.155 4.155 27 C -0.177 4.177 28 N -0.196 5.196 29 C -0.088 4.088 30 C -0.146 4.146 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.219 0.781 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.208 0.792 41 H 0.194 0.806 42 H 0.199 0.801 43 H 0.193 0.807 44 H 0.229 0.771 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.459 0.244 15.963 17.621 hybrid contribution 0.522 -0.317 -1.985 2.077 sum -6.937 -0.074 13.978 15.605 Atomic orbital electron populations 1.22637 0.94258 1.03989 1.02248 1.22469 0.94502 0.97127 0.86159 0.88831 1.21280 0.93918 0.91547 0.86569 0.91250 1.42317 1.80881 1.09106 1.03202 1.19214 1.39527 0.95374 0.83596 0.90832 1.24759 1.01727 0.95646 0.98261 1.69649 1.52138 1.03137 1.32694 0.86115 0.77382 0.77792 0.84826 1.20442 1.21726 1.21758 1.23620 1.01214 1.02035 0.92912 1.22370 0.95068 0.87482 0.96630 1.48411 1.51422 1.28532 1.04380 1.17602 0.79910 0.84675 0.81764 1.90776 1.52407 1.53177 1.44953 1.20147 0.98092 0.95580 0.93096 1.24227 0.97035 0.94258 1.04040 1.22705 0.93914 0.95085 0.91292 1.66841 1.20451 1.31758 1.00416 1.17966 0.96365 0.91234 0.84034 1.43106 1.39564 1.22159 1.04219 1.22943 1.01752 0.93721 0.97070 1.22407 1.04181 0.98847 0.92314 1.70345 1.12739 1.07605 1.28917 1.25413 1.03567 1.00946 0.78862 1.21572 0.99041 0.95986 0.98024 0.92072 0.89975 0.91474 0.78057 0.93297 0.90429 0.90096 0.90659 0.91326 0.79248 0.80588 0.80056 0.80668 0.77116 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 7.83 37.16 0.29 -1.66 16 2 C 0.10 1.33 2.45 -66.95 -0.16 1.16 16 3 H 0.09 1.25 5.55 -51.93 -0.29 0.96 16 4 C 0.18 2.86 3.11 -66.09 -0.21 2.65 16 5 H 0.07 1.12 7.55 -51.92 -0.39 0.72 16 6 N -0.71 -14.99 5.25 -51.64 -0.27 -15.26 16 7 C -0.25 -5.99 9.98 -15.06 -0.15 -6.14 16 8 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 9 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 10 N -0.93 -25.44 13.06 55.49 0.72 -24.72 16 11 Si 0.91 20.59 29.55 -169.99 -5.02 15.56 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 C -0.16 -2.30 6.77 -24.58 -0.17 -2.47 16 16 C 0.11 1.40 6.89 -2.52 -0.02 1.38 16 17 N -0.60 -8.00 3.06 -164.12 -0.50 -8.50 16 18 C 0.57 8.10 7.57 -12.19 -0.09 8.00 16 19 O -0.54 -8.86 16.74 5.35 0.09 -8.77 16 20 C -0.06 -0.70 5.31 -104.68 -0.56 -1.26 16 21 C -0.18 -1.87 6.68 -39.01 -0.26 -2.13 16 22 C 0.13 1.26 11.17 -17.61 -0.20 1.07 16 23 N -0.48 -5.52 9.87 -12.34 -0.12 -5.65 16 24 C 0.33 3.86 7.50 -154.42 -1.16 2.70 16 25 N -0.41 -4.61 2.98 -63.84 -0.19 -4.80 16 26 C -0.02 -0.26 11.17 -16.44 -0.18 -0.44 16 27 C -0.03 -0.34 11.85 -17.82 -0.21 -0.55 16 28 N -0.48 -5.85 11.24 -14.46 -0.16 -6.01 16 29 C 0.19 2.09 11.89 -89.58 -1.07 1.03 16 30 C -0.12 -1.41 9.07 -38.83 -0.35 -1.76 16 31 H 0.06 0.65 4.90 -51.93 -0.25 0.39 16 32 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.07 0.76 7.71 -51.93 -0.40 0.36 16 34 H 0.39 8.61 7.51 -40.82 -0.31 8.30 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.19 2.00 2.27 -52.65 -0.12 1.88 16 41 H 0.18 1.26 8.06 -52.48 -0.42 0.83 16 42 H 0.18 1.57 8.06 -52.48 -0.42 1.15 16 43 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.21 1.64 7.07 -52.48 -0.37 1.27 16 45 H 0.15 1.58 6.46 -52.49 -0.34 1.24 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -30.85 367.81 -9.90 -40.74 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.40 Total: 10.58 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -4.58 Total: 1.29 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -0.52 Total: -64.95 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.85 -9.90 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987550524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.433 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds