Wall clock time and date at job start Sat Apr 11 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.99336 * 2 1 4 4 C 1.54329 * 109.99606 * 238.97050 * 2 1 3 5 5 H 1.09007 * 110.51001 * 336.96716 * 4 2 1 6 6 N 1.46499 * 110.85534 * 100.19011 * 4 2 1 7 7 C 1.36939 * 120.00016 * 200.14963 * 6 4 2 8 8 H 1.08006 * 119.99878 * 359.97438 * 7 6 4 9 9 C 1.38810 * 119.99962 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00082 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00196 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46727 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47211 * 119.99820 * 11 9 7 14 14 H 1.48504 * 109.47056 * 240.00298 * 11 9 7 15 15 C 1.55159 * 103.02151 * 218.66559 * 4 2 1 16 16 C 1.54907 * 101.58418 * 35.29940 * 15 4 2 17 17 N 1.47014 * 109.88622 * 121.09275 * 2 1 3 18 18 C 1.34777 * 125.65102 * 298.40364 * 17 2 1 19 19 O 1.21516 * 119.99755 * 175.28107 * 18 17 2 20 20 C 1.48157 * 119.99894 * 355.54921 * 18 17 2 21 21 C 1.39945 * 120.88954 * 355.83883 * 20 18 17 22 22 C 1.38047 * 119.13059 * 179.77445 * 21 20 18 23 23 N 1.31857 * 120.98304 * 0.50763 * 22 21 20 24 24 C 1.32225 * 121.97032 * 359.74446 * 23 22 21 25 25 N 1.39844 * 119.62107 * 180.02562 * 24 23 22 26 26 C 1.37170 * 126.49045 * 4.69479 * 25 24 23 27 27 C 1.34621 * 106.83381 * 179.84149 * 26 25 24 28 28 N 1.34154 * 108.21140 * 0.42254 * 27 26 25 29 29 C 1.30484 * 109.37218 * 359.72923 * 28 27 26 30 30 C 1.38910 * 120.75116 * 359.97438 * 24 23 22 31 31 H 1.09002 * 109.47262 * 282.83609 * 1 2 3 32 32 H 1.08997 * 109.47342 * 42.84430 * 1 2 3 33 33 H 1.09005 * 109.46707 * 162.84147 * 1 2 3 34 34 H 0.96990 * 119.99964 * 20.14948 * 6 4 2 35 35 H 0.96996 * 120.00179 * 179.97438 * 10 9 7 36 36 H 1.09002 * 110.99766 * 277.22856 * 15 4 2 37 37 H 1.09000 * 111.00741 * 153.37861 * 15 4 2 38 38 H 1.09000 * 110.36869 * 204.16190 * 16 15 4 39 39 H 1.08992 * 110.36603 * 81.83383 * 16 15 4 40 40 H 1.07996 * 120.43277 * 0.02562 * 21 20 18 41 41 H 1.08006 * 119.50825 * 180.23339 * 22 21 20 42 42 H 1.08003 * 126.58136 * 359.97019 * 26 25 24 43 43 H 1.07999 * 125.89169 * 180.15260 * 27 26 25 44 44 H 1.08004 * 125.71852 * 179.97438 * 29 28 27 45 45 H 1.07994 * 120.52528 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7476 -1.2427 5 1 1.3054 -1.4405 -1.6197 6 7 2.4637 0.1971 -2.2863 7 6 2.5654 -0.2210 -3.5863 8 1 2.3468 -1.2473 -3.8422 9 6 2.9506 0.6740 -4.5750 10 7 3.2175 1.9245 -4.2631 11 14 3.0901 0.1036 -6.3483 12 1 2.7395 -1.3369 -6.4339 13 1 2.1597 0.8913 -7.1964 14 1 4.4827 0.3027 -6.8242 15 6 3.2865 -1.5182 -0.6915 16 6 2.8101 -1.8824 0.7368 17 7 2.0301 -0.7139 1.1839 18 6 1.8074 -0.3620 2.4657 19 8 2.1987 -1.0753 3.3683 20 6 1.0803 0.8915 2.7741 21 6 0.6923 1.7667 1.7534 22 6 0.0122 2.9224 2.0815 23 7 -0.2651 3.2135 3.3372 24 6 0.0863 2.4191 4.3341 25 7 -0.2335 2.7758 5.6479 26 6 -0.9774 3.8592 6.0410 27 6 -1.0414 3.8212 7.3851 28 7 -0.3497 2.7522 7.8077 29 6 0.1390 2.1179 6.7775 30 6 0.7685 1.2337 4.0911 31 1 -0.3634 0.2283 1.0020 32 1 -0.3634 0.7535 -0.6988 33 1 -0.3633 -0.9820 -0.3032 34 1 2.6603 1.1186 -2.0564 35 1 3.4870 2.5498 -4.9539 36 1 4.1670 -0.8766 -0.6579 37 1 3.4809 -2.4153 -1.2792 38 1 3.6657 -2.0410 1.3932 39 1 2.1804 -2.7717 0.7114 40 1 0.9184 1.5390 0.7222 41 1 -0.2934 3.6004 1.2982 42 1 -1.4274 4.5992 5.3958 43 1 -1.5566 4.5314 8.0148 44 1 0.7392 1.2208 6.8159 45 1 1.0540 0.5877 4.9080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987550524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:07 Heat of formation + Delta-G solvation = 116.060244 kcal Electronic energy + Delta-G solvation = -29215.835875 eV Core-core repulsion = 25236.249032 eV Total energy + Delta-G solvation = -3979.586843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.45427 -42.22090 -40.57864 -39.06324 -36.10458 -35.52842 -34.31584 -33.24821 -32.71587 -30.96669 -30.79793 -30.26119 -27.10502 -26.15051 -25.31492 -24.89177 -23.79468 -22.43766 -22.10364 -21.70047 -20.92715 -19.76641 -19.08704 -18.26807 -17.66726 -17.35452 -16.89783 -16.86335 -16.64672 -16.38644 -15.81755 -15.45760 -15.40497 -15.04006 -14.94829 -14.88256 -14.75394 -14.52422 -14.29245 -14.15934 -13.70964 -13.46453 -13.12108 -12.93912 -12.76975 -12.65501 -12.54219 -12.22488 -12.04499 -11.82461 -11.71856 -11.59007 -11.52130 -11.28233 -11.15532 -10.90398 -10.81420 -9.91341 -9.83497 -9.54514 -8.99357 -7.91811 -5.19907 -0.68570 -0.42959 1.02492 1.25028 1.51587 1.54176 1.61577 1.66603 1.70026 2.02463 2.57889 2.59188 2.93278 3.17192 3.38854 3.41980 3.51477 3.58173 3.66619 3.73006 3.83159 3.88814 4.04661 4.14068 4.20365 4.33545 4.37632 4.42086 4.48985 4.51165 4.60455 4.64784 4.71152 4.80338 4.89621 4.96268 5.01446 5.11103 5.21783 5.23257 5.26118 5.42165 5.59900 5.62792 5.98333 6.24734 6.31229 6.52115 6.80877 6.87749 7.38409 8.08383 8.31782 9.31012 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020259 B = 0.002492 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.755466 B =11233.912265 C =12284.237952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.111 3.889 3 H 0.095 0.905 4 C 0.172 3.828 5 H 0.075 0.925 6 N -0.723 5.723 7 C -0.232 4.232 8 H 0.080 0.920 9 C -0.068 4.068 10 N -0.964 5.964 11 Si 0.962 3.038 12 H -0.266 1.266 13 H -0.297 1.297 14 H -0.301 1.301 15 C -0.148 4.148 16 C 0.111 3.889 17 N -0.595 5.595 18 C 0.572 3.428 19 O -0.563 6.563 20 C -0.069 4.069 21 C -0.169 4.169 22 C 0.133 3.867 23 N -0.490 5.490 24 C 0.326 3.674 25 N -0.415 5.415 26 C -0.033 4.033 27 C -0.040 4.040 28 N -0.508 5.508 29 C 0.189 3.811 30 C -0.124 4.124 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.376 0.624 35 H 0.250 0.750 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.193 0.807 41 H 0.206 0.794 42 H 0.196 0.804 43 H 0.199 0.801 44 H 0.233 0.767 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.394 -0.280 14.888 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.007 3.993 3 H 0.112 0.888 4 C 0.062 3.938 5 H 0.093 0.907 6 N -0.363 5.363 7 C -0.363 4.363 8 H 0.098 0.902 9 C -0.261 4.261 10 N -0.615 5.615 11 Si 0.793 3.207 12 H -0.190 1.190 13 H -0.224 1.224 14 H -0.228 1.228 15 C -0.189 4.189 16 C -0.011 4.011 17 N -0.326 5.326 18 C 0.362 3.638 19 O -0.443 6.443 20 C -0.080 4.080 21 C -0.189 4.189 22 C -0.025 4.025 23 N -0.203 5.203 24 C 0.099 3.901 25 N -0.097 5.097 26 C -0.162 4.162 27 C -0.184 4.184 28 N -0.225 5.225 29 C -0.092 4.092 30 C -0.147 4.147 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.209 0.791 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.209 0.791 41 H 0.223 0.777 42 H 0.213 0.787 43 H 0.216 0.784 44 H 0.249 0.751 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.560 -0.228 16.227 18.348 hybrid contribution 0.848 -0.228 -1.983 2.169 sum -7.712 -0.456 14.244 16.204 Atomic orbital electron populations 1.22589 0.92446 1.04419 1.03036 1.22341 0.95749 0.96528 0.84665 0.88827 1.21459 0.94503 0.91182 0.86607 0.90709 1.42413 1.81047 1.09519 1.03301 1.19554 1.36630 0.95292 0.84870 0.90209 1.25401 1.03268 0.95991 1.01432 1.69773 1.54532 1.04068 1.33097 0.85235 0.76359 0.77890 0.81217 1.19019 1.22433 1.22847 1.23444 0.99769 1.01659 0.94064 1.22353 0.95445 0.87990 0.95315 1.48432 1.51255 1.28556 1.04394 1.17856 0.79586 0.84990 0.81408 1.90759 1.53742 1.54235 1.45612 1.20033 0.98884 0.95230 0.93834 1.24207 0.96818 0.94252 1.03616 1.23185 0.92832 0.95011 0.91425 1.66913 1.20650 1.31867 1.00865 1.18048 0.96486 0.91327 0.84277 1.43211 1.39791 1.22499 1.04193 1.23264 1.01726 0.93851 0.97390 1.22856 1.03926 0.98796 0.92790 1.70354 1.13781 1.08621 1.29765 1.25895 1.03364 1.01383 0.78593 1.21621 0.98938 0.96112 0.98032 0.91150 0.89297 0.91251 0.79062 0.94136 0.92236 0.89492 0.90639 0.89659 0.79125 0.77703 0.78671 0.78433 0.75053 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 7.83 71.98 0.56 -2.82 16 2 C 0.11 2.72 2.45 45.34 0.11 2.83 16 3 H 0.09 2.36 5.55 -2.39 -0.01 2.35 16 4 C 0.17 5.26 3.11 46.18 0.14 5.40 16 5 H 0.08 2.24 7.55 -2.38 -0.02 2.23 16 6 N -0.72 -29.77 5.25 -317.30 -1.67 -31.44 16 7 C -0.23 -11.05 9.98 84.03 0.84 -10.21 16 8 H 0.08 3.65 7.83 -2.91 -0.02 3.63 16 9 C -0.07 -3.50 5.50 84.86 0.47 -3.04 16 10 N -0.96 -53.33 13.06 21.65 0.28 -53.05 16 11 Si 0.96 42.23 29.55 68.60 2.03 44.26 16 12 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 13 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 14 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 15 C -0.15 -4.18 6.77 31.99 0.22 -3.96 16 16 C 0.11 2.73 6.89 86.85 0.60 3.33 16 17 N -0.59 -15.08 3.06 -791.44 -2.43 -17.51 16 18 C 0.57 15.48 7.57 86.88 0.66 16.13 16 19 O -0.56 -18.17 16.74 -3.77 -0.06 -18.23 16 20 C -0.07 -1.56 5.31 -19.90 -0.11 -1.67 16 21 C -0.17 -3.26 6.68 22.64 0.15 -3.11 16 22 C 0.13 2.32 11.17 84.64 0.95 3.26 16 23 N -0.49 -10.27 9.87 -192.94 -1.90 -12.18 16 24 C 0.33 7.11 7.50 132.77 1.00 8.11 16 25 N -0.41 -8.87 2.98 -355.90 -1.06 -9.94 16 26 C -0.03 -0.65 11.17 83.03 0.93 0.28 16 27 C -0.04 -0.78 11.85 83.51 0.99 0.21 16 28 N -0.51 -11.98 11.24 -199.67 -2.24 -14.23 16 29 C 0.19 3.91 11.89 179.99 2.14 6.05 16 30 C -0.12 -2.68 9.07 22.76 0.21 -2.48 16 31 H 0.07 1.32 4.90 -2.39 -0.01 1.31 16 32 H 0.09 1.71 8.13 -2.39 -0.02 1.69 16 33 H 0.07 1.39 7.71 -2.38 -0.02 1.37 16 34 H 0.38 16.77 7.51 -92.72 -0.70 16.07 16 35 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 37 H 0.09 2.33 8.14 -2.39 -0.02 2.32 16 38 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 39 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.19 3.63 2.27 -3.06 -0.01 3.63 16 41 H 0.21 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.20 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.20 2.69 8.06 -2.91 -0.02 2.67 16 44 H 0.23 3.38 7.07 -2.91 -0.02 3.36 16 45 H 0.16 3.14 6.46 -2.91 -0.02 3.13 16 Total: -1.00 -65.21 367.81 3.15 -62.06 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.36 Total: 31.93 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 9.85 Total: 18.31 kcal Atomic # 7 Polarization: -129.31 SS G_CDS: -9.02 Total: -138.33 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.06 Total: -18.23 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -65.21 3.15 -62.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987550524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.121 kcal (2) G-P(sol) polarization free energy of solvation -65.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds