Wall clock time and date at job start Sat Apr 11 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.99834 * 2 1 4 4 C 1.54331 * 109.88256 * 238.90419 * 2 1 3 5 5 H 1.09005 * 110.86734 * 144.34179 * 4 2 1 6 6 N 1.46497 * 110.71672 * 21.13853 * 4 2 1 7 7 C 1.36941 * 119.99613 * 160.02267 * 6 4 2 8 8 H 1.08001 * 119.99915 * 0.02562 * 7 6 4 9 9 C 1.38807 * 119.99951 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00071 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99894 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47062 * 269.99787 * 11 9 7 13 13 H 1.48500 * 109.47248 * 29.99984 * 11 9 7 14 14 H 1.48497 * 109.46934 * 150.00105 * 11 9 7 15 15 C 1.55152 * 102.93970 * 262.77313 * 4 2 1 16 16 C 1.54912 * 101.58497 * 324.50008 * 15 4 2 17 17 N 1.47018 * 109.88335 * 121.09522 * 2 1 3 18 18 C 1.34784 * 125.64818 * 300.50890 * 17 2 1 19 19 O 1.21503 * 119.99869 * 356.29643 * 18 17 2 20 20 C 1.48155 * 119.99948 * 176.28636 * 18 17 2 21 21 C 1.39952 * 120.89007 * 25.28128 * 20 18 17 22 22 C 1.38045 * 119.13297 * 179.97438 * 21 20 18 23 23 N 1.31849 * 120.98269 * 0.02562 * 22 21 20 24 24 C 1.32223 * 121.97235 * 359.97438 * 23 22 21 25 25 N 1.39848 * 119.62291 * 180.02562 * 24 23 22 26 26 C 1.37174 * 126.48638 * 4.71840 * 25 24 23 27 27 C 1.34626 * 106.82999 * 179.87573 * 26 25 24 28 28 N 1.34155 * 108.21213 * 0.38492 * 27 26 25 29 29 C 1.30480 * 109.37416 * 359.75614 * 28 27 26 30 30 C 1.38905 * 120.75060 * 359.72168 * 24 23 22 31 31 H 1.08991 * 109.47051 * 181.09791 * 1 2 3 32 32 H 1.08997 * 109.46982 * 301.09607 * 1 2 3 33 33 H 1.09004 * 109.46766 * 61.09631 * 1 2 3 34 34 H 0.96994 * 120.00215 * 340.02575 * 6 4 2 35 35 H 0.97003 * 120.00172 * 179.97438 * 10 9 7 36 36 H 1.09001 * 111.00229 * 82.57412 * 15 4 2 37 37 H 1.08998 * 111.00670 * 206.38579 * 15 4 2 38 38 H 1.08997 * 110.36498 * 155.84795 * 16 15 4 39 39 H 1.09006 * 110.36409 * 278.16873 * 16 15 4 40 40 H 1.07995 * 120.43206 * 0.02562 * 21 20 18 41 41 H 1.08008 * 119.50482 * 180.02562 * 22 21 20 42 42 H 1.08003 * 126.58749 * 359.97438 * 26 25 24 43 43 H 1.07994 * 125.89808 * 180.13910 * 27 26 25 44 44 H 1.07997 * 125.72639 * 179.97438 * 29 28 27 45 45 H 1.08002 * 120.52801 * 180.28781 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2428 5 1 2.9652 -0.2843 -1.6211 6 7 1.0292 -0.8026 -2.2875 7 6 1.3878 -1.0416 -3.5873 8 1 2.4265 -1.1914 -3.8422 9 6 0.4160 -1.0924 -4.5772 10 7 -0.8501 -0.9114 -4.2664 11 14 0.9050 -1.4192 -6.3502 12 1 1.1800 -0.1297 -7.0335 13 1 2.1252 -2.2650 -6.3793 14 1 -0.2016 -2.1225 -7.0472 15 6 2.3519 -2.1694 -0.6924 16 6 2.8568 -1.8497 0.7368 17 7 2.0300 -0.7140 1.1839 18 6 1.7743 -0.3852 2.4657 19 8 1.1317 0.6142 2.7199 20 6 2.2765 -1.2424 3.5648 21 6 3.4036 -2.0526 3.3863 22 6 3.8406 -2.8367 4.4351 23 7 3.2123 -2.8313 5.5942 24 6 2.1439 -2.0821 5.8080 25 7 1.5159 -2.1141 7.0572 26 6 1.9439 -2.7957 8.1681 27 6 1.0499 -2.5503 9.1443 28 7 0.0957 -1.7489 8.6473 29 6 0.3630 -1.4804 7.3987 30 6 1.6420 -1.2590 4.8080 31 1 -0.3633 -1.0274 0.0197 32 1 -0.3633 0.5308 0.8800 33 1 -0.3633 0.4967 -0.8997 34 1 0.0963 -0.6684 -2.0585 35 1 -1.5292 -0.9465 -4.9582 36 1 1.4452 -2.7736 -0.6604 37 1 3.1266 -2.6621 -1.2799 38 1 2.7088 -2.7080 1.3922 39 1 3.9092 -1.5667 0.7129 40 1 3.9252 -2.0636 2.4407 41 1 4.7100 -3.4639 4.3041 42 1 2.8289 -3.4099 8.2452 43 1 1.0914 -2.9355 10.1524 44 1 -0.2322 -0.8593 6.7459 45 1 0.7718 -0.6451 4.9881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987550525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:10 Heat of formation + Delta-G solvation = 115.874281 kcal Electronic energy + Delta-G solvation = -28876.499351 eV Core-core repulsion = 24896.904443 eV Total energy + Delta-G solvation = -3979.594907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.70892 -41.04769 -39.72990 -37.71211 -34.92423 -34.26724 -33.27319 -31.72752 -30.99565 -30.48751 -29.64920 -29.03539 -25.59721 -25.40806 -24.56117 -23.50378 -22.93274 -21.67983 -21.30625 -20.39399 -19.24489 -18.64343 -17.61415 -17.30441 -16.60612 -16.27377 -16.15076 -15.79763 -15.70723 -15.01165 -14.78765 -14.38430 -14.26222 -14.19619 -14.03724 -13.85032 -13.75098 -13.49943 -13.12573 -12.72112 -12.60955 -12.22177 -11.88064 -11.61236 -11.39610 -11.17941 -11.06758 -10.88850 -10.63613 -10.60367 -10.49477 -10.39866 -10.31224 -10.09188 -9.90027 -9.74232 -9.23773 -9.04715 -8.85194 -8.68457 -7.13227 -5.90686 -3.21355 0.10586 0.32300 1.75379 1.98021 2.59013 2.75224 2.79323 3.32891 3.35049 3.40330 3.42361 3.74556 3.96363 4.15386 4.27579 4.38637 4.43824 4.46691 4.73877 4.81430 4.93515 5.04235 5.06762 5.13495 5.16299 5.29182 5.33069 5.38923 5.48475 5.50374 5.62585 5.71572 5.80922 5.88084 5.96041 6.06299 6.13801 6.31116 6.38210 6.40699 6.51798 6.67055 6.70265 6.82987 7.21499 7.41196 7.57383 7.61442 7.94424 8.27394 9.39311 9.92754 10.27340 11.31528 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025661 B = 0.002181 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.907305 B =12836.903883 C =13341.272342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 H 0.077 0.923 4 C 0.174 3.826 5 H 0.065 0.935 6 N -0.717 5.717 7 C -0.247 4.247 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.281 1.281 14 H -0.291 1.291 15 C -0.155 4.155 16 C 0.084 3.916 17 N -0.595 5.595 18 C 0.568 3.432 19 O -0.526 6.526 20 C -0.046 4.046 21 C -0.165 4.165 22 C 0.132 3.868 23 N -0.487 5.487 24 C 0.342 3.658 25 N -0.411 5.411 26 C -0.027 4.027 27 C -0.031 4.031 28 N -0.478 5.478 29 C 0.196 3.804 30 C -0.126 4.126 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.391 0.609 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.164 0.836 41 H 0.175 0.825 42 H 0.182 0.818 43 H 0.177 0.823 44 H 0.213 0.787 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.221 -4.684 19.971 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 H 0.095 0.905 4 C 0.062 3.938 5 H 0.083 0.917 6 N -0.360 5.360 7 C -0.378 4.378 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.216 1.216 13 H -0.207 1.207 14 H -0.217 1.217 15 C -0.197 4.197 16 C -0.039 4.039 17 N -0.328 5.328 18 C 0.355 3.645 19 O -0.403 6.403 20 C -0.057 4.057 21 C -0.186 4.186 22 C -0.025 4.025 23 N -0.199 5.199 24 C 0.114 3.886 25 N -0.093 5.093 26 C -0.156 4.156 27 C -0.175 4.175 28 N -0.194 5.194 29 C -0.085 4.085 30 C -0.149 4.149 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.230 0.770 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.181 0.819 41 H 0.192 0.808 42 H 0.199 0.801 43 H 0.194 0.806 44 H 0.230 0.770 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.551 -4.379 21.047 23.524 hybrid contribution 0.420 -0.127 -2.020 2.067 sum 9.971 -4.506 19.027 21.949 Atomic orbital electron populations 1.22017 0.94233 1.02607 1.02960 1.21939 0.95625 0.95955 0.83940 0.90489 1.21186 0.93393 0.91941 0.87272 0.91673 1.42680 1.05154 1.85222 1.02976 1.19214 0.93064 1.41625 0.83927 0.91005 1.24771 0.95297 1.02284 0.98237 1.69653 0.99361 1.56016 1.32680 0.86170 0.77232 0.77785 0.84822 1.21609 1.20695 1.21732 1.23620 1.01969 1.01554 0.92518 1.22845 0.94494 0.88636 0.97888 1.48484 1.49397 1.30265 1.04670 1.17612 0.80617 0.84929 0.81302 1.90799 1.40150 1.26299 1.83039 1.20237 0.95485 0.96091 0.93905 1.23061 0.97020 0.96253 1.02238 1.22617 0.97730 0.96120 0.86060 1.66844 1.07210 1.20571 1.25315 1.17982 0.91720 0.94225 0.84709 1.43133 1.20393 1.37852 1.07916 1.22932 1.03625 1.03022 0.86022 1.22428 0.93078 1.01776 1.00255 1.70359 1.26390 1.15721 1.06970 1.25458 0.87658 1.01159 0.94252 1.21588 1.02393 0.99439 0.91511 0.92358 0.92180 0.89781 0.77050 0.93280 0.90448 0.90220 0.90452 0.90817 0.81869 0.80779 0.80051 0.80616 0.77022 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 7.95 37.16 0.30 -2.47 16 2 C 0.13 2.04 3.46 -66.95 -0.23 1.81 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.17 3.01 3.46 -66.10 -0.23 2.78 16 5 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 6 N -0.72 -16.22 5.02 -51.65 -0.26 -16.48 16 7 C -0.25 -6.31 9.98 -15.06 -0.15 -6.46 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 11 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 C -0.16 -2.21 6.77 -24.58 -0.17 -2.37 16 16 C 0.08 0.89 5.03 -2.53 -0.01 0.88 16 17 N -0.60 -7.96 3.08 -164.00 -0.51 -8.47 16 18 C 0.57 7.83 7.45 -12.18 -0.09 7.74 16 19 O -0.53 -8.88 15.74 5.36 0.08 -8.79 16 20 C -0.05 -0.49 5.75 -104.68 -0.60 -1.10 16 21 C -0.17 -1.32 8.06 -39.01 -0.31 -1.63 16 22 C 0.13 0.97 11.17 -17.62 -0.20 0.77 16 23 N -0.49 -4.72 9.87 -12.34 -0.12 -4.84 16 24 C 0.34 3.56 7.50 -154.42 -1.16 2.40 16 25 N -0.41 -4.28 2.98 -63.84 -0.19 -4.47 16 26 C -0.03 -0.25 11.17 -16.44 -0.18 -0.44 16 27 C -0.03 -0.30 11.85 -17.82 -0.21 -0.51 16 28 N -0.48 -5.61 11.24 -14.46 -0.16 -5.77 16 29 C 0.20 2.02 11.89 -89.58 -1.07 0.95 16 30 C -0.13 -1.32 9.08 -38.83 -0.35 -1.68 16 31 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.06 1.03 6.88 -51.93 -0.36 0.67 16 33 H 0.08 1.60 6.67 -51.93 -0.35 1.26 16 34 H 0.39 9.44 4.92 -40.82 -0.20 9.24 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.68 6.05 -51.93 -0.31 0.36 16 39 H 0.07 0.61 7.37 -51.93 -0.38 0.22 16 40 H 0.16 1.00 4.53 -52.49 -0.24 0.76 16 41 H 0.18 0.66 8.06 -52.48 -0.42 0.24 16 42 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 43 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.21 1.57 7.07 -52.49 -0.37 1.20 16 45 H 0.15 1.49 6.65 -52.49 -0.35 1.14 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -32.72 369.01 -10.14 -42.86 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.48 Total: 9.80 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -4.76 Total: 0.34 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: -0.51 Total: -65.94 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.72 -10.14 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987550525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.732 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds