Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.99834 * 2 1 4 4 C 1.54331 * 109.88256 * 238.90419 * 2 1 3 5 5 H 1.09005 * 110.86734 * 144.34179 * 4 2 1 6 6 N 1.46497 * 110.71672 * 21.13853 * 4 2 1 7 7 C 1.36941 * 119.99613 * 160.02267 * 6 4 2 8 8 H 1.08001 * 119.99915 * 0.02562 * 7 6 4 9 9 C 1.38807 * 119.99951 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00071 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99894 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47062 * 269.99787 * 11 9 7 13 13 H 1.48500 * 109.47248 * 29.99984 * 11 9 7 14 14 H 1.48497 * 109.46934 * 150.00105 * 11 9 7 15 15 C 1.55152 * 102.93970 * 262.77313 * 4 2 1 16 16 C 1.54912 * 101.58497 * 324.50008 * 15 4 2 17 17 N 1.47018 * 109.88335 * 121.09522 * 2 1 3 18 18 C 1.34784 * 125.64818 * 300.50890 * 17 2 1 19 19 O 1.21503 * 119.99869 * 356.29643 * 18 17 2 20 20 C 1.48155 * 119.99948 * 176.28636 * 18 17 2 21 21 C 1.39952 * 120.89007 * 25.28128 * 20 18 17 22 22 C 1.38045 * 119.13297 * 179.97438 * 21 20 18 23 23 N 1.31849 * 120.98269 * 0.02562 * 22 21 20 24 24 C 1.32223 * 121.97235 * 359.97438 * 23 22 21 25 25 N 1.39848 * 119.62291 * 180.02562 * 24 23 22 26 26 C 1.37174 * 126.48638 * 4.71840 * 25 24 23 27 27 C 1.34626 * 106.82999 * 179.87573 * 26 25 24 28 28 N 1.34155 * 108.21213 * 0.38492 * 27 26 25 29 29 C 1.30480 * 109.37416 * 359.75614 * 28 27 26 30 30 C 1.38905 * 120.75060 * 359.72168 * 24 23 22 31 31 H 1.08991 * 109.47051 * 181.09791 * 1 2 3 32 32 H 1.08997 * 109.46982 * 301.09607 * 1 2 3 33 33 H 1.09004 * 109.46766 * 61.09631 * 1 2 3 34 34 H 0.96994 * 120.00215 * 340.02575 * 6 4 2 35 35 H 0.97003 * 120.00172 * 179.97438 * 10 9 7 36 36 H 1.09001 * 111.00229 * 82.57412 * 15 4 2 37 37 H 1.08998 * 111.00670 * 206.38579 * 15 4 2 38 38 H 1.08997 * 110.36498 * 155.84795 * 16 15 4 39 39 H 1.09006 * 110.36409 * 278.16873 * 16 15 4 40 40 H 1.07995 * 120.43206 * 0.02562 * 21 20 18 41 41 H 1.08008 * 119.50482 * 180.02562 * 22 21 20 42 42 H 1.08003 * 126.58749 * 359.97438 * 26 25 24 43 43 H 1.07994 * 125.89808 * 180.13910 * 27 26 25 44 44 H 1.07997 * 125.72639 * 179.97438 * 29 28 27 45 45 H 1.08002 * 120.52801 * 180.28781 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2428 5 1 2.9652 -0.2843 -1.6211 6 7 1.0292 -0.8026 -2.2875 7 6 1.3878 -1.0416 -3.5873 8 1 2.4265 -1.1914 -3.8422 9 6 0.4160 -1.0924 -4.5772 10 7 -0.8501 -0.9114 -4.2664 11 14 0.9050 -1.4192 -6.3502 12 1 1.1800 -0.1297 -7.0335 13 1 2.1252 -2.2650 -6.3793 14 1 -0.2016 -2.1225 -7.0472 15 6 2.3519 -2.1694 -0.6924 16 6 2.8568 -1.8497 0.7368 17 7 2.0300 -0.7140 1.1839 18 6 1.7743 -0.3852 2.4657 19 8 1.1317 0.6142 2.7199 20 6 2.2765 -1.2424 3.5648 21 6 3.4036 -2.0526 3.3863 22 6 3.8406 -2.8367 4.4351 23 7 3.2123 -2.8313 5.5942 24 6 2.1439 -2.0821 5.8080 25 7 1.5159 -2.1141 7.0572 26 6 1.9439 -2.7957 8.1681 27 6 1.0499 -2.5503 9.1443 28 7 0.0957 -1.7489 8.6473 29 6 0.3630 -1.4804 7.3987 30 6 1.6420 -1.2590 4.8080 31 1 -0.3633 -1.0274 0.0197 32 1 -0.3633 0.5308 0.8800 33 1 -0.3633 0.4967 -0.8997 34 1 0.0963 -0.6684 -2.0585 35 1 -1.5292 -0.9465 -4.9582 36 1 1.4452 -2.7736 -0.6604 37 1 3.1266 -2.6621 -1.2799 38 1 2.7088 -2.7080 1.3922 39 1 3.9092 -1.5667 0.7129 40 1 3.9252 -2.0636 2.4407 41 1 4.7100 -3.4639 4.3041 42 1 2.8289 -3.4099 8.2452 43 1 1.0914 -2.9355 10.1524 44 1 -0.2322 -0.8593 6.7459 45 1 0.7718 -0.6451 4.9881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987550525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = 96.970249 kcal Electronic energy + Delta-G solvation = -28877.319091 eV Core-core repulsion = 24896.904443 eV Total energy + Delta-G solvation = -3980.414648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.43973 -41.95602 -40.67753 -38.93445 -36.13534 -35.38988 -34.21444 -33.22630 -32.19640 -31.34013 -30.53979 -30.35078 -26.93654 -26.39457 -25.55188 -24.97206 -23.92711 -22.52014 -22.07556 -21.33029 -20.44273 -19.62238 -19.36593 -18.23149 -17.41818 -17.14305 -17.07377 -16.84081 -16.66069 -16.41427 -15.97671 -15.51424 -15.44535 -15.01238 -14.93552 -14.79884 -14.70539 -14.50525 -14.44446 -13.96650 -13.67473 -13.49491 -13.15245 -12.94146 -12.91214 -12.86587 -12.44624 -12.10120 -12.04036 -11.90626 -11.64113 -11.55759 -11.40612 -11.27824 -11.18980 -10.91806 -10.76954 -9.94855 -9.80460 -9.55491 -8.99844 -7.92735 -5.21503 -0.63164 -0.39106 1.04361 1.25126 1.50802 1.51749 1.59680 1.61090 1.76881 2.02047 2.58176 2.59940 3.01272 3.19697 3.39668 3.44463 3.59634 3.61370 3.73497 3.78110 3.81743 3.92335 4.13160 4.18195 4.26839 4.34404 4.37592 4.43320 4.50602 4.54419 4.59737 4.61637 4.70467 4.79576 4.84725 5.01456 5.02440 5.20854 5.21351 5.25215 5.29640 5.49430 5.57274 5.62923 5.98504 6.28834 6.35916 6.54673 6.87373 6.87915 7.36555 8.10553 8.32613 9.30865 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025661 B = 0.002181 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.907305 B =12836.903883 C =13341.272342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.135 3.865 3 H 0.072 0.928 4 C 0.165 3.835 5 H 0.073 0.927 6 N -0.734 5.734 7 C -0.234 4.234 8 H 0.084 0.916 9 C -0.078 4.078 10 N -0.971 5.971 11 Si 0.971 3.029 12 H -0.291 1.291 13 H -0.264 1.264 14 H -0.302 1.302 15 C -0.147 4.147 16 C 0.089 3.911 17 N -0.595 5.595 18 C 0.568 3.432 19 O -0.567 6.567 20 C -0.060 4.060 21 C -0.149 4.149 22 C 0.143 3.857 23 N -0.495 5.495 24 C 0.330 3.670 25 N -0.415 5.415 26 C -0.029 4.029 27 C -0.042 4.042 28 N -0.509 5.509 29 C 0.186 3.814 30 C -0.135 4.135 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.380 0.620 35 H 0.249 0.751 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.190 0.810 41 H 0.219 0.781 42 H 0.201 0.799 43 H 0.199 0.801 44 H 0.229 0.771 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.795 -6.501 20.715 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.031 3.969 3 H 0.090 0.910 4 C 0.055 3.945 5 H 0.091 0.909 6 N -0.376 5.376 7 C -0.366 4.366 8 H 0.102 0.898 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.801 3.199 12 H -0.219 1.219 13 H -0.189 1.189 14 H -0.229 1.229 15 C -0.187 4.187 16 C -0.032 4.032 17 N -0.327 5.327 18 C 0.357 3.643 19 O -0.447 6.447 20 C -0.072 4.072 21 C -0.169 4.169 22 C -0.015 4.015 23 N -0.208 5.208 24 C 0.104 3.896 25 N -0.098 5.098 26 C -0.158 4.158 27 C -0.186 4.186 28 N -0.227 5.227 29 C -0.095 4.095 30 C -0.158 4.158 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.216 0.784 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.207 0.793 41 H 0.235 0.765 42 H 0.218 0.782 43 H 0.215 0.785 44 H 0.245 0.755 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.200 -6.224 21.832 26.261 hybrid contribution -0.607 0.440 -2.168 2.294 sum 12.593 -5.784 19.664 24.056 Atomic orbital electron populations 1.21840 0.95747 1.01487 1.01472 1.21649 0.94291 0.96064 0.84867 0.90950 1.21428 0.92205 0.94340 0.86512 0.90869 1.42881 1.05833 1.85447 1.03467 1.19648 0.93352 1.38553 0.85029 0.89766 1.25545 0.95432 1.03962 1.02031 1.69817 1.00334 1.58834 1.33235 0.85172 0.76958 0.77399 0.80403 1.21886 1.18883 1.22939 1.23417 1.01690 0.98622 0.95020 1.23104 0.95784 0.88637 0.95687 1.48453 1.49615 1.30696 1.03902 1.18057 0.79814 0.84706 0.81750 1.90779 1.41993 1.28232 1.83651 1.20006 0.97193 0.97134 0.92839 1.23327 0.95436 0.94643 1.03479 1.23365 0.97984 0.95459 0.84704 1.66939 1.06935 1.20368 1.26538 1.18005 0.92284 0.94738 0.84607 1.43232 1.20410 1.37879 1.08266 1.23288 1.04059 1.02888 0.85610 1.22882 0.92748 1.01550 1.01434 1.70350 1.27610 1.16887 1.07839 1.25822 0.88016 1.01341 0.94304 1.21576 1.02649 0.99803 0.91792 0.93284 0.92501 0.92215 0.78407 0.94219 0.92717 0.88638 0.87615 0.86786 0.79320 0.76480 0.78231 0.78454 0.75495 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 7.95 71.98 0.57 -4.72 16 2 C 0.14 4.25 3.46 45.34 0.16 4.40 16 3 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 4 C 0.16 5.49 3.46 46.18 0.16 5.65 16 5 H 0.07 2.34 8.12 -2.38 -0.02 2.32 16 6 N -0.73 -33.42 5.02 -317.32 -1.59 -35.01 16 7 C -0.23 -11.85 9.98 84.03 0.84 -11.01 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 10 N -0.97 -57.41 13.06 21.65 0.28 -57.13 16 11 Si 0.97 43.87 29.55 68.60 2.03 45.90 16 12 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 13 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 14 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 15 C -0.15 -3.76 6.77 31.99 0.22 -3.55 16 16 C 0.09 1.50 5.03 86.86 0.44 1.93 16 17 N -0.59 -14.69 3.08 -791.07 -2.44 -17.12 16 18 C 0.57 14.93 7.45 86.88 0.65 15.58 16 19 O -0.57 -19.32 15.74 -3.73 -0.06 -19.38 16 20 C -0.06 -1.17 5.75 -19.90 -0.11 -1.28 16 21 C -0.15 -1.69 8.06 22.64 0.18 -1.50 16 22 C 0.14 1.39 11.17 84.64 0.95 2.33 16 23 N -0.50 -7.97 9.87 -192.95 -1.90 -9.88 16 24 C 0.33 6.33 7.50 132.77 1.00 7.32 16 25 N -0.42 -8.28 2.98 -355.90 -1.06 -9.34 16 26 C -0.03 -0.52 11.17 83.03 0.93 0.41 16 27 C -0.04 -0.79 11.85 83.51 0.99 0.20 16 28 N -0.51 -11.93 11.24 -199.68 -2.24 -14.18 16 29 C 0.19 3.84 11.89 179.99 2.14 5.98 16 30 C -0.14 -2.70 9.08 22.76 0.21 -2.49 16 31 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 32 H 0.06 2.04 6.88 -2.39 -0.02 2.03 16 33 H 0.06 2.42 6.67 -2.38 -0.02 2.41 16 34 H 0.38 18.98 4.92 -92.71 -0.46 18.52 16 35 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.11 1.27 6.05 -2.39 -0.01 1.26 16 39 H 0.11 1.13 7.37 -2.38 -0.02 1.11 16 40 H 0.19 1.10 4.53 -2.91 -0.01 1.08 16 41 H 0.22 0.19 8.06 -2.91 -0.02 0.16 16 42 H 0.20 2.59 8.06 -2.91 -0.02 2.56 16 43 H 0.20 2.50 8.06 -2.91 -0.02 2.47 16 44 H 0.23 3.50 7.07 -2.91 -0.02 3.48 16 45 H 0.15 2.97 6.65 -2.91 -0.02 2.95 16 Total: -1.00 -74.21 369.01 3.37 -70.85 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.59 Total: 29.79 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 9.77 Total: 15.51 kcal Atomic # 7 Polarization: -133.70 SS G_CDS: -8.96 Total: -142.66 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.06 Total: -19.38 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -74.21 3.37 -70.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987550525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.818 kcal (2) G-P(sol) polarization free energy of solvation -74.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds