Wall clock time and date at job start Sat Apr 11 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.87828 * 2 1 4 4 C 1.54327 * 110.00958 * 121.09456 * 2 1 3 5 5 H 1.09005 * 110.72313 * 23.32311 * 4 2 1 6 6 N 1.46498 * 110.72338 * 260.04560 * 4 2 1 7 7 C 1.36936 * 120.00205 * 160.02265 * 6 4 2 8 8 H 1.08006 * 119.99870 * 0.02562 * 7 6 4 9 9 C 1.38811 * 119.99874 * 180.02562 * 7 6 4 10 10 N 1.31618 * 120.00162 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99657 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47213 * 89.99844 * 11 9 7 13 13 H 1.48502 * 109.46833 * 209.99834 * 11 9 7 14 14 H 1.48499 * 109.47176 * 329.99777 * 11 9 7 15 15 C 1.55163 * 102.94361 * 141.68371 * 4 2 1 16 16 C 1.54913 * 101.58003 * 324.49605 * 15 4 2 17 17 N 1.47021 * 109.88352 * 238.97986 * 2 1 3 18 18 C 1.34772 * 125.64817 * 61.52301 * 17 2 1 19 19 O 1.21553 * 120.00127 * 356.33734 * 18 17 2 20 20 C 1.47859 * 120.00075 * 176.32563 * 18 17 2 21 21 C 1.39615 * 120.10978 * 27.25660 * 20 18 17 22 22 C 1.37979 * 119.98403 * 179.97438 * 21 20 18 23 23 C 1.38263 * 120.21263 * 359.97438 * 22 21 20 24 24 C 1.38901 * 120.23324 * 359.97438 * 23 22 21 25 25 N 1.40271 * 119.99608 * 179.97438 * 24 23 22 26 26 C 1.36112 * 125.94181 * 4.72058 * 25 24 23 27 27 C 1.35370 * 106.05172 * 179.84747 * 26 25 24 28 28 N 1.33778 * 106.53287 * 0.40000 * 27 26 25 29 29 N 1.28603 * 109.06170 * 359.74495 * 28 27 26 30 30 C 1.38582 * 120.00789 * 359.74479 * 24 23 22 31 31 H 1.09000 * 109.47064 * 179.56778 * 1 2 3 32 32 H 1.08999 * 109.46881 * 299.56323 * 1 2 3 33 33 H 1.08994 * 109.46919 * 59.56612 * 1 2 3 34 34 H 0.97001 * 119.99758 * 340.02495 * 6 4 2 35 35 H 0.96998 * 119.99797 * 180.02562 * 10 9 7 36 36 H 1.09002 * 111.00281 * 206.42866 * 15 4 2 37 37 H 1.09000 * 111.00511 * 82.57054 * 15 4 2 38 38 H 1.08997 * 110.36444 * 155.84402 * 16 15 4 39 39 H 1.08994 * 110.37101 * 278.17457 * 16 15 4 40 40 H 1.08004 * 120.01429 * 359.94978 * 21 20 18 41 41 H 1.07996 * 119.88991 * 180.02562 * 22 21 20 42 42 H 1.08008 * 119.88279 * 179.97438 * 23 22 21 43 43 H 1.08004 * 126.97221 * 359.97438 * 26 25 24 44 44 H 1.07997 * 126.73567 * 180.13669 * 27 26 25 45 45 H 1.08004 * 120.10503 * 180.27699 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 1.2418 5 1 1.3103 -1.4472 1.6180 6 7 2.4580 0.1970 2.2864 7 6 2.5626 -0.2219 3.5859 8 1 2.3506 -1.2499 3.8406 9 6 2.9410 0.6746 4.5758 10 7 3.1989 1.9274 4.2655 11 14 3.0844 0.1028 6.3485 12 1 4.4659 -0.3785 6.6032 13 1 2.7786 1.2347 7.2599 14 1 2.1226 -1.0022 6.5915 15 6 3.2918 -1.5108 0.6895 16 6 2.8177 -1.8764 -0.7392 17 7 2.0300 -0.7125 -1.1848 18 6 1.8061 -0.3597 -2.4661 19 8 1.0847 0.5853 -2.7191 20 6 2.4382 -1.1220 -3.5641 21 6 2.7714 -2.4656 -3.3827 22 6 3.3607 -3.1746 -4.4093 23 6 3.6226 -2.5590 -5.6193 24 6 3.2939 -1.2230 -5.8099 25 7 3.5623 -0.6032 -7.0393 26 6 4.0547 -1.2143 -8.1514 27 6 4.1531 -0.2497 -9.0960 28 7 3.7333 0.8854 -8.5261 29 7 3.3909 0.6434 -7.3103 30 6 2.6964 -0.5035 -4.7872 31 1 -0.3633 -1.0276 -0.0078 32 1 -0.3633 0.5070 0.8939 33 1 -0.3633 0.5205 -0.8860 34 1 2.6487 1.1202 2.0576 35 1 3.4637 2.5537 4.9572 36 1 3.4920 -2.4074 1.2761 37 1 4.1682 -0.8634 0.6567 38 1 3.6743 -2.0286 -1.3958 39 1 2.1937 -2.7698 -0.7148 40 1 2.5683 -2.9499 -2.4389 41 1 3.6174 -4.2140 -4.2674 42 1 4.0844 -3.1189 -6.4191 43 1 4.3124 -2.2577 -8.2590 44 1 4.5059 -0.3716 -10.1094 45 1 2.4360 0.5342 -4.9352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987618925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:17 Heat of formation + Delta-G solvation = 132.461276 kcal Electronic energy + Delta-G solvation = -28744.285836 eV Core-core repulsion = 24765.410195 eV Total energy + Delta-G solvation = -3978.875641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.78993 -40.74559 -39.17565 -37.45857 -35.14795 -34.19033 -32.35779 -31.75572 -31.14899 -31.00987 -30.22088 -29.06663 -25.53008 -24.91537 -24.64854 -23.17432 -23.13623 -21.85284 -21.66241 -20.41388 -19.71586 -18.48793 -17.34149 -17.05284 -16.85793 -16.44754 -16.16180 -15.85901 -15.45638 -14.81309 -14.72278 -14.62653 -14.24195 -14.05114 -13.71757 -13.48953 -13.40619 -13.09173 -12.89031 -12.55495 -12.35245 -12.22298 -11.95860 -11.82786 -11.54643 -11.39630 -11.33903 -11.17751 -11.09422 -10.87034 -10.65421 -10.32984 -10.11928 -9.88232 -9.86712 -9.74644 -9.57704 -9.10768 -8.98809 -8.55807 -7.09149 -5.86325 -3.17395 0.06920 0.50454 1.50217 1.80232 2.18107 2.61448 2.90167 3.35920 3.37479 3.42810 3.44954 3.88843 4.02458 4.20879 4.39953 4.49299 4.49901 4.54410 4.69143 4.78476 4.80857 4.90846 5.09449 5.14972 5.21165 5.33705 5.35542 5.43498 5.57179 5.60628 5.67870 5.70062 5.75744 5.79115 5.85004 5.97860 6.03437 6.05103 6.20684 6.36805 6.38947 6.49298 6.55063 6.62936 6.83989 7.55620 7.60623 8.07210 8.12566 8.30632 9.42229 9.95980 10.30450 11.35669 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023048 B = 0.002159 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.579881 B =12965.176174 C =13234.226753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.080 0.920 4 C 0.177 3.823 5 H 0.066 0.934 6 N -0.714 5.714 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.157 4.157 16 C 0.088 3.912 17 N -0.599 5.599 18 C 0.568 3.432 19 O -0.529 6.529 20 C -0.100 4.100 21 C -0.090 4.090 22 C -0.104 4.104 23 C -0.099 4.099 24 C 0.110 3.890 25 N -0.240 5.240 26 C -0.051 4.051 27 C -0.045 4.045 28 N -0.263 5.263 29 N -0.073 5.073 30 C -0.045 4.045 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.154 0.846 41 H 0.145 0.855 42 H 0.138 0.862 43 H 0.194 0.806 44 H 0.196 0.804 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 -15.351 -22.741 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.098 0.902 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.576 5.576 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.199 4.199 16 C -0.035 4.035 17 N -0.332 5.332 18 C 0.356 3.644 19 O -0.407 6.407 20 C -0.103 4.103 21 C -0.109 4.109 22 C -0.122 4.122 23 C -0.120 4.120 24 C 0.019 3.981 25 N -0.028 5.028 26 C -0.199 4.199 27 C -0.200 4.200 28 N -0.129 5.129 29 N -0.051 5.051 30 C -0.066 4.066 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.211 0.789 44 H 0.213 0.787 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.158 -13.451 -22.263 26.037 hybrid contribution 0.722 -1.188 0.439 1.457 sum 1.880 -14.639 -21.824 26.346 Atomic orbital electron populations 1.22062 0.94581 1.01729 1.02985 1.21984 0.94654 0.97002 0.83955 0.90171 1.21243 0.93474 0.91663 0.87100 0.91604 1.42344 1.80951 1.09030 1.03157 1.19179 1.39560 0.95080 0.83798 0.90963 1.24782 1.02008 0.95618 0.98215 1.69662 1.52330 1.02921 1.32677 0.86178 0.77741 0.77398 0.84744 1.21651 1.21726 1.20677 1.23629 1.01595 1.01942 0.92696 1.22790 0.94707 0.88323 0.97701 1.48434 1.51384 1.28672 1.04731 1.17696 0.81493 0.83865 0.81323 1.90806 1.37786 1.28990 1.83094 1.19859 1.01577 0.94707 0.94201 1.22177 0.95034 0.93272 1.00386 1.21012 0.98865 1.00674 0.91692 1.21053 0.99996 0.91713 0.99191 1.17466 1.04502 0.92755 0.83356 1.44770 1.40858 1.07489 1.09678 1.23840 1.06999 1.02328 0.86725 1.23692 1.05661 0.88864 1.01798 1.75170 1.13478 1.24604 0.99674 1.78485 1.19331 0.95873 1.11447 1.21007 0.94230 1.01472 0.89913 0.93033 0.90978 0.91738 0.77931 0.93306 0.90333 0.90436 0.90536 0.91115 0.82917 0.83707 0.84388 0.78864 0.78740 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.11 37.16 0.34 -2.16 16 2 C 0.13 2.15 3.22 -66.95 -0.22 1.93 16 3 H 0.08 1.55 7.69 -51.93 -0.40 1.15 16 4 C 0.18 3.18 3.12 -66.09 -0.21 2.98 16 5 H 0.07 1.18 7.84 -51.93 -0.41 0.77 16 6 N -0.71 -16.73 5.25 -51.65 -0.27 -17.00 16 7 C -0.25 -6.38 9.98 -15.06 -0.15 -6.53 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.20 13.06 55.49 0.72 -26.47 16 11 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C -0.16 -2.34 6.77 -24.58 -0.17 -2.51 16 16 C 0.09 1.00 5.02 -2.52 -0.01 0.98 16 17 N -0.60 -8.65 3.07 -164.11 -0.50 -9.16 16 18 C 0.57 8.61 7.46 -12.33 -0.09 8.51 16 19 O -0.53 -9.89 15.55 5.32 0.08 -9.80 16 20 C -0.10 -1.17 5.70 -104.99 -0.60 -1.77 16 21 C -0.09 -0.73 7.93 -39.16 -0.31 -1.04 16 22 C -0.10 -0.60 10.02 -39.67 -0.40 -1.00 16 23 C -0.10 -0.62 9.45 -39.33 -0.37 -1.00 16 24 C 0.11 1.08 6.66 -83.62 -0.56 0.52 16 25 N -0.24 -2.55 3.56 -10.50 -0.04 -2.59 16 26 C -0.05 -0.37 10.91 -16.68 -0.18 -0.55 16 27 C -0.04 -0.37 12.05 -17.73 -0.21 -0.58 16 28 N -0.26 -3.36 12.39 30.24 0.37 -2.98 16 29 N -0.07 -0.99 12.42 60.35 0.75 -0.24 16 30 C -0.05 -0.55 9.16 -39.00 -0.36 -0.90 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.09 6.76 -51.93 -0.35 0.74 16 34 H 0.39 9.86 7.51 -40.82 -0.31 9.55 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.08 0.72 6.16 -51.93 -0.32 0.40 16 39 H 0.07 0.64 7.29 -51.93 -0.38 0.26 16 40 H 0.15 1.03 4.56 -52.48 -0.24 0.79 16 41 H 0.15 0.38 8.06 -52.49 -0.42 -0.05 16 42 H 0.14 0.42 6.77 -52.48 -0.36 0.06 16 43 H 0.19 0.48 7.12 -52.48 -0.37 0.11 16 44 H 0.20 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.15 2.13 7.52 -52.48 -0.39 1.74 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -34.25 372.27 -7.49 -41.74 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.61 Total: 7.87 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -3.59 Total: -3.47 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 1.04 Total: -58.44 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.25 -7.49 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987618925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.206 kcal (2) G-P(sol) polarization free energy of solvation -34.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds