Wall clock time and date at job start Sat Apr 11 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.00048 * 2 1 4 4 C 1.54319 * 109.88073 * 121.09667 * 2 1 3 5 5 C 1.55150 * 102.94299 * 141.60843 * 4 2 1 6 6 H 1.09005 * 111.00650 * 206.42110 * 5 4 2 7 7 N 1.46506 * 111.00732 * 82.60978 * 5 4 2 8 8 C 1.36939 * 120.00325 * 155.00134 * 7 5 4 9 9 H 1.07999 * 119.99962 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99868 * 180.02562 * 8 7 5 11 11 N 1.31616 * 120.00080 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 120.00135 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.46860 * 90.00018 * 12 10 8 14 14 H 1.48493 * 109.47038 * 210.00367 * 12 10 8 15 15 H 1.48504 * 109.47108 * 330.00361 * 12 10 8 16 16 C 1.55131 * 101.48585 * 324.33253 * 5 4 2 17 17 N 1.47017 * 109.88018 * 238.90420 * 2 1 3 18 18 C 1.34776 * 125.65325 * 61.60582 * 17 2 1 19 19 O 1.21607 * 119.99743 * 5.89579 * 18 17 2 20 20 C 1.47414 * 120.00401 * 185.62147 * 18 17 2 21 21 C 1.41328 * 126.40577 * 7.19837 * 20 18 17 22 22 N 1.30481 * 108.06226 * 179.97438 * 21 20 18 23 23 N 1.39934 * 108.91489 * 0.02562 * 22 21 20 24 24 C 1.40180 * 125.76916 * 180.02562 * 23 22 21 25 25 C 1.39259 * 120.48579 * 359.97406 * 24 23 22 26 26 C 1.38509 * 118.36263 * 179.97438 * 25 24 23 27 27 C 1.38268 * 119.23245 * 0.02562 * 26 25 24 28 28 N 1.31860 * 120.90876 * 0.02562 * 27 26 25 29 29 C 1.31822 * 121.79634 * 359.68705 * 28 27 26 30 30 C 1.34540 * 108.45882 * 359.74801 * 23 22 21 31 31 H 1.09000 * 109.47331 * 179.64327 * 1 2 3 32 32 H 1.09002 * 109.47280 * 299.64761 * 1 2 3 33 33 H 1.09002 * 109.47180 * 59.63901 * 1 2 3 34 34 H 1.09004 * 110.72280 * 259.97274 * 4 2 1 35 35 H 1.09001 * 110.72296 * 23.06883 * 4 2 1 36 36 H 0.97003 * 119.99259 * 335.00039 * 7 5 4 37 37 H 0.97002 * 120.00327 * 179.97438 * 11 10 8 38 38 H 1.08999 * 110.49151 * 278.45147 * 16 5 4 39 39 H 1.09006 * 110.34194 * 156.05895 * 16 5 4 40 40 H 1.07999 * 125.96926 * 359.97438 * 21 20 18 41 41 H 1.08001 * 120.81543 * 359.97438 * 25 24 23 42 42 H 1.08002 * 120.37817 * 180.02562 * 26 25 24 43 43 H 1.07993 * 119.54121 * 180.02562 * 27 26 25 44 44 H 1.07996 * 119.66242 * 180.29085 * 29 28 27 45 45 H 1.07998 * 126.30845 * 180.26073 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 3.2875 -1.5143 0.6924 6 1 3.4851 -2.4111 1.2796 7 7 4.4676 -0.6471 0.6502 8 6 5.7218 -1.1947 0.6996 9 1 5.8410 -2.2658 0.7701 10 6 6.8399 -0.3730 0.6602 11 7 8.0453 -0.8993 0.7071 12 14 6.6337 1.4796 0.5389 13 1 6.5625 2.0601 1.9040 14 1 7.7922 2.0602 -0.1861 15 1 5.3823 1.7913 -0.1973 16 6 2.8098 -1.8825 -0.7369 17 7 2.0300 -0.7140 -1.1839 18 6 1.8074 -0.3621 -2.4657 19 8 1.2339 0.6798 -2.7193 20 6 2.2644 -1.2372 -3.5604 21 6 2.8168 -2.5310 -3.4251 22 7 3.0947 -2.9791 -4.6186 23 7 2.7395 -2.0083 -5.5617 24 6 2.8860 -2.1234 -6.9511 25 6 3.4262 -3.2783 -7.5113 26 6 3.5504 -3.3452 -8.8892 27 6 3.1381 -2.2720 -9.6573 28 7 2.6314 -1.1920 -9.0955 29 6 2.4907 -1.0897 -7.7888 30 6 2.2279 -0.9483 -4.9100 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3634 0.5084 0.8931 33 1 -0.3634 0.5194 -0.8867 34 1 2.3529 -0.0460 2.0201 35 1 1.3039 -1.4437 1.6201 36 1 4.3605 0.3149 0.5872 37 1 8.8267 -0.3252 0.6792 38 1 2.1800 -2.7718 -0.7114 39 1 3.6655 -2.0412 -1.3932 40 1 2.9804 -3.0569 -2.4961 41 1 3.7404 -4.1014 -6.8867 42 1 3.9646 -4.2256 -9.3581 43 1 3.2323 -2.3190 -10.7320 44 1 2.0671 -0.1909 -7.3656 45 1 1.8587 -0.0384 -5.3595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988954291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:25 Heat of formation + Delta-G solvation = 117.352848 kcal Electronic energy + Delta-G solvation = -29215.519280 eV Core-core repulsion = 25235.988488 eV Total energy + Delta-G solvation = -3979.530792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.98068 -40.38283 -39.60590 -37.34241 -34.49534 -34.12917 -32.73685 -31.87695 -31.51657 -30.47380 -29.48887 -29.00792 -25.79324 -24.91675 -24.29375 -23.63022 -22.81183 -21.39501 -20.98831 -20.01345 -19.31362 -18.22595 -17.73798 -17.29115 -16.75670 -16.31828 -15.83432 -15.74540 -15.32942 -14.85526 -14.58536 -14.30992 -14.08744 -14.06315 -13.79963 -13.61745 -13.42183 -13.04327 -12.81232 -12.71490 -12.57170 -12.35999 -12.01916 -11.96388 -11.43744 -11.31890 -11.11315 -11.01975 -10.83354 -10.64774 -10.38776 -10.15854 -10.10972 -10.07195 -9.67859 -9.66392 -9.41926 -9.08694 -8.57486 -8.30407 -7.37492 -5.86007 -3.23024 0.21992 0.71672 1.64527 1.91395 2.11062 3.20950 3.33911 3.34293 3.38967 3.42630 3.56261 3.93538 4.04689 4.21332 4.47685 4.52342 4.52614 4.65363 4.74126 4.96402 4.97956 5.00503 5.09292 5.15801 5.20184 5.26580 5.45691 5.48796 5.55681 5.59604 5.62962 5.67271 5.75558 5.87501 5.96992 5.97938 6.05487 6.20510 6.27498 6.28261 6.44436 6.52469 6.65744 6.70669 7.26701 7.42067 7.82374 7.88125 8.32775 8.43800 9.10033 9.82942 10.01107 11.31493 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.003230 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.060791 B = 8666.962815 C =10001.308358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.072 0.928 4 C -0.142 4.142 5 C 0.175 3.825 6 H 0.085 0.915 7 N -0.735 5.735 8 C -0.252 4.252 9 H 0.093 0.907 10 C 0.011 3.989 11 N -0.929 5.929 12 Si 0.879 3.121 13 H -0.282 1.282 14 H -0.291 1.291 15 H -0.276 1.276 16 C 0.057 3.943 17 N -0.596 5.596 18 C 0.609 3.391 19 O -0.556 6.556 20 C -0.263 4.263 21 C 0.092 3.908 22 N -0.292 5.292 23 N -0.315 5.315 24 C 0.111 3.889 25 C -0.072 4.072 26 C -0.146 4.146 27 C 0.085 3.915 28 N -0.457 5.457 29 C 0.086 3.914 30 C 0.121 3.879 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.363 0.637 37 H 0.261 0.739 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.210 0.790 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.724 -5.343 -13.644 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.181 4.181 5 C 0.063 3.937 6 H 0.103 0.897 7 N -0.376 5.376 8 C -0.381 4.381 9 H 0.111 0.889 10 C -0.185 4.185 11 N -0.575 5.575 12 Si 0.709 3.291 13 H -0.209 1.209 14 H -0.217 1.217 15 H -0.202 1.202 16 C -0.069 4.069 17 N -0.328 5.328 18 C 0.399 3.601 19 O -0.436 6.436 20 C -0.277 4.277 21 C -0.097 4.097 22 N -0.109 5.109 23 N -0.088 5.088 24 C 0.016 3.984 25 C -0.100 4.100 26 C -0.167 4.167 27 C -0.072 4.072 28 N -0.165 5.165 29 C -0.074 4.074 30 C -0.025 4.025 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.196 0.804 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.226 0.774 41 H 0.170 0.830 42 H 0.164 0.836 43 H 0.181 0.819 44 H 0.181 0.819 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -14.574 -5.206 -15.087 21.613 hybrid contribution 0.124 1.287 0.881 1.565 sum -14.450 -3.918 -14.206 20.639 Atomic orbital electron populations 1.22124 0.95176 1.01934 1.02464 1.21491 0.93788 0.96611 0.84610 0.90989 1.23128 0.98444 1.00223 0.96305 1.21329 0.86155 0.94498 0.91711 0.89741 1.42700 1.01811 1.04327 1.88742 1.19050 0.81219 0.94120 1.43725 0.88877 1.24651 0.95104 0.97301 1.01465 1.69690 0.96932 1.34264 1.56650 0.86632 0.77189 0.87335 0.77918 1.20898 1.21695 1.20209 1.23766 0.94740 0.87327 1.01069 1.48156 1.51838 1.28612 1.04190 1.16694 0.78534 0.84209 0.80697 1.90735 1.44663 1.24663 1.83566 1.20317 1.16065 0.98167 0.93109 1.25006 0.94028 0.93873 0.96744 1.77289 1.23637 1.12394 0.97582 1.45544 1.46207 1.12977 1.04108 1.18711 1.02271 0.97696 0.79712 1.21448 0.96201 0.96785 0.95569 1.22151 1.00440 1.00820 0.93250 1.22897 0.94587 0.88657 1.01052 1.67774 1.12748 1.25241 1.10719 1.22622 0.98541 0.97474 0.88776 1.22958 0.95068 0.92603 0.91920 0.92618 0.91889 0.91723 0.89792 0.90207 0.80360 0.92937 0.91877 0.89278 0.77406 0.82996 0.83569 0.81883 0.81942 0.79104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.10 37.16 0.34 -1.65 16 2 C 0.14 2.03 3.42 -66.96 -0.23 1.80 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.14 -1.91 6.07 -24.90 -0.15 -2.07 16 5 C 0.18 2.89 3.72 -65.66 -0.24 2.64 16 6 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 7 N -0.73 -16.01 5.05 -51.23 -0.26 -16.26 16 8 C -0.25 -6.62 10.44 -15.06 -0.16 -6.78 16 9 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 10 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 11 N -0.93 -28.32 13.97 55.49 0.78 -27.55 16 12 Si 0.88 21.93 27.74 -169.99 -4.71 17.21 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 15 H -0.28 -6.69 6.52 56.52 0.37 -6.33 16 16 C 0.06 0.84 4.82 -2.41 -0.01 0.83 16 17 N -0.60 -9.45 3.06 -164.14 -0.50 -9.95 16 18 C 0.61 10.37 7.58 -12.52 -0.09 10.28 16 19 O -0.56 -10.68 16.17 5.27 0.09 -10.60 16 20 C -0.26 -3.97 6.05 -105.05 -0.64 -4.60 16 21 C 0.09 1.30 10.27 -16.95 -0.17 1.12 16 22 N -0.29 -4.18 11.85 30.87 0.37 -3.82 16 23 N -0.32 -4.13 3.77 -10.11 -0.04 -4.17 16 24 C 0.11 1.24 6.70 -83.45 -0.56 0.69 16 25 C -0.07 -0.70 9.77 -39.10 -0.38 -1.08 16 26 C -0.15 -1.05 10.10 -39.47 -0.40 -1.45 16 27 C 0.09 0.66 11.18 -17.53 -0.20 0.46 16 28 N -0.46 -4.62 10.35 -13.10 -0.14 -4.75 16 29 C 0.09 0.87 10.62 -17.35 -0.18 0.69 16 30 C 0.12 1.60 10.63 -16.43 -0.17 1.42 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.93 7.08 -51.93 -0.37 0.56 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 36 H 0.36 8.16 5.73 -40.82 -0.23 7.93 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.06 0.74 7.73 -51.93 -0.40 0.34 16 39 H 0.09 1.47 5.91 -51.93 -0.31 1.17 16 40 H 0.21 2.57 4.87 -52.49 -0.26 2.31 16 41 H 0.15 1.44 7.77 -52.49 -0.41 1.03 16 42 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.16 1.34 6.74 -52.49 -0.35 0.99 16 45 H 0.19 2.00 7.04 -52.49 -0.37 1.63 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -34.56 372.53 -7.81 -42.37 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.65 Total: 9.38 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -3.35 Total: 2.53 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: 0.21 Total: -66.51 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.56 -7.81 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988954291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.724 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds