Wall clock time and date at job start Sat Apr 11 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.00048 * 2 1 4 4 C 1.54319 * 109.88073 * 121.09667 * 2 1 3 5 5 C 1.55150 * 102.94299 * 141.60843 * 4 2 1 6 6 H 1.09005 * 111.00650 * 206.42110 * 5 4 2 7 7 N 1.46506 * 111.00732 * 82.60978 * 5 4 2 8 8 C 1.36939 * 120.00325 * 155.00134 * 7 5 4 9 9 H 1.07999 * 119.99962 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99868 * 180.02562 * 8 7 5 11 11 N 1.31616 * 120.00080 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 120.00135 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.46860 * 90.00018 * 12 10 8 14 14 H 1.48493 * 109.47038 * 210.00367 * 12 10 8 15 15 H 1.48504 * 109.47108 * 330.00361 * 12 10 8 16 16 C 1.55131 * 101.48585 * 324.33253 * 5 4 2 17 17 N 1.47017 * 109.88018 * 238.90420 * 2 1 3 18 18 C 1.34776 * 125.65325 * 61.60582 * 17 2 1 19 19 O 1.21607 * 119.99743 * 5.89579 * 18 17 2 20 20 C 1.47414 * 120.00401 * 185.62147 * 18 17 2 21 21 C 1.41328 * 126.40577 * 7.19837 * 20 18 17 22 22 N 1.30481 * 108.06226 * 179.97438 * 21 20 18 23 23 N 1.39934 * 108.91489 * 0.02562 * 22 21 20 24 24 C 1.40180 * 125.76916 * 180.02562 * 23 22 21 25 25 C 1.39259 * 120.48579 * 359.97406 * 24 23 22 26 26 C 1.38509 * 118.36263 * 179.97438 * 25 24 23 27 27 C 1.38268 * 119.23245 * 0.02562 * 26 25 24 28 28 N 1.31860 * 120.90876 * 0.02562 * 27 26 25 29 29 C 1.31822 * 121.79634 * 359.68705 * 28 27 26 30 30 C 1.34540 * 108.45882 * 359.74801 * 23 22 21 31 31 H 1.09000 * 109.47331 * 179.64327 * 1 2 3 32 32 H 1.09002 * 109.47280 * 299.64761 * 1 2 3 33 33 H 1.09002 * 109.47180 * 59.63901 * 1 2 3 34 34 H 1.09004 * 110.72280 * 259.97274 * 4 2 1 35 35 H 1.09001 * 110.72296 * 23.06883 * 4 2 1 36 36 H 0.97003 * 119.99259 * 335.00039 * 7 5 4 37 37 H 0.97002 * 120.00327 * 179.97438 * 11 10 8 38 38 H 1.08999 * 110.49151 * 278.45147 * 16 5 4 39 39 H 1.09006 * 110.34194 * 156.05895 * 16 5 4 40 40 H 1.07999 * 125.96926 * 359.97438 * 21 20 18 41 41 H 1.08001 * 120.81543 * 359.97438 * 25 24 23 42 42 H 1.08002 * 120.37817 * 180.02562 * 26 25 24 43 43 H 1.07993 * 119.54121 * 180.02562 * 27 26 25 44 44 H 1.07996 * 119.66242 * 180.29085 * 29 28 27 45 45 H 1.07998 * 126.30845 * 180.26073 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 3.2875 -1.5143 0.6924 6 1 3.4851 -2.4111 1.2796 7 7 4.4676 -0.6471 0.6502 8 6 5.7218 -1.1947 0.6996 9 1 5.8410 -2.2658 0.7701 10 6 6.8399 -0.3730 0.6602 11 7 8.0453 -0.8993 0.7071 12 14 6.6337 1.4796 0.5389 13 1 6.5625 2.0601 1.9040 14 1 7.7922 2.0602 -0.1861 15 1 5.3823 1.7913 -0.1973 16 6 2.8098 -1.8825 -0.7369 17 7 2.0300 -0.7140 -1.1839 18 6 1.8074 -0.3621 -2.4657 19 8 1.2339 0.6798 -2.7193 20 6 2.2644 -1.2372 -3.5604 21 6 2.8168 -2.5310 -3.4251 22 7 3.0947 -2.9791 -4.6186 23 7 2.7395 -2.0083 -5.5617 24 6 2.8860 -2.1234 -6.9511 25 6 3.4262 -3.2783 -7.5113 26 6 3.5504 -3.3452 -8.8892 27 6 3.1381 -2.2720 -9.6573 28 7 2.6314 -1.1920 -9.0955 29 6 2.4907 -1.0897 -7.7888 30 6 2.2279 -0.9483 -4.9100 31 1 -0.3634 -1.0276 -0.0064 32 1 -0.3634 0.5084 0.8931 33 1 -0.3634 0.5194 -0.8867 34 1 2.3529 -0.0460 2.0201 35 1 1.3039 -1.4437 1.6201 36 1 4.3605 0.3149 0.5872 37 1 8.8267 -0.3252 0.6792 38 1 2.1800 -2.7718 -0.7114 39 1 3.6655 -2.0412 -1.3932 40 1 2.9804 -3.0569 -2.4961 41 1 3.7404 -4.1014 -6.8867 42 1 3.9646 -4.2256 -9.3581 43 1 3.2323 -2.3190 -10.7320 44 1 2.0671 -0.1909 -7.3656 45 1 1.8587 -0.0384 -5.3595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988954291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:24 Heat of formation + Delta-G solvation = 94.021237 kcal Electronic energy + Delta-G solvation = -29216.531014 eV Core-core repulsion = 25235.988488 eV Total energy + Delta-G solvation = -3980.542527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.97333 -41.27234 -40.70035 -38.68424 -35.89184 -35.38145 -33.48377 -33.39858 -32.94664 -31.46273 -30.57594 -30.38200 -26.91402 -25.88974 -25.39137 -25.05045 -23.95583 -22.39056 -22.12999 -21.29370 -20.40190 -19.72846 -19.20962 -18.08463 -17.65734 -17.54234 -16.88343 -16.81243 -16.36063 -16.27690 -15.89978 -15.71864 -15.21948 -15.07827 -14.81103 -14.77678 -14.53683 -14.34287 -14.17016 -13.90552 -13.62030 -13.47444 -13.22243 -13.14856 -12.99941 -12.72144 -12.39828 -12.35802 -12.07976 -11.99629 -11.87884 -11.75817 -11.47981 -11.09472 -10.92640 -10.86625 -10.73612 -10.42012 -9.72303 -9.45118 -9.19632 -8.02358 -5.33637 -0.58835 0.02748 0.65322 0.97982 1.04819 1.34415 1.37157 1.41826 2.02508 2.33965 2.46018 2.65403 3.11686 3.26476 3.28234 3.50214 3.54920 3.61549 3.65559 3.79488 3.88015 3.88469 3.97838 4.14192 4.19217 4.26442 4.36219 4.40812 4.50814 4.53524 4.69477 4.73671 4.78889 4.85391 4.96864 4.97446 5.11327 5.15537 5.20792 5.23621 5.35630 5.37515 5.54665 5.76518 5.81166 6.22826 6.23852 6.57663 6.73378 7.08392 7.17367 7.85944 8.01510 9.18690 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.003230 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.060791 B = 8666.962815 C =10001.308358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.131 3.869 3 H 0.047 0.953 4 C -0.125 4.125 5 C 0.160 3.840 6 H 0.096 0.904 7 N -0.742 5.742 8 C -0.217 4.217 9 H 0.074 0.926 10 C -0.057 4.057 11 N -0.979 5.979 12 Si 0.939 3.061 13 H -0.275 1.275 14 H -0.303 1.303 15 H -0.268 1.268 16 C 0.065 3.935 17 N -0.599 5.599 18 C 0.604 3.396 19 O -0.587 6.587 20 C -0.290 4.290 21 C 0.090 3.910 22 N -0.309 5.309 23 N -0.311 5.311 24 C 0.079 3.921 25 C -0.082 4.082 26 C -0.135 4.135 27 C 0.090 3.910 28 N -0.479 5.479 29 C 0.083 3.917 30 C 0.126 3.874 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.360 0.640 37 H 0.255 0.745 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.221 0.779 41 H 0.149 0.851 42 H 0.182 0.818 43 H 0.198 0.802 44 H 0.173 0.827 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.652 -6.083 -14.660 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.028 3.972 3 H 0.065 0.935 4 C -0.163 4.163 5 C 0.051 3.949 6 H 0.113 0.887 7 N -0.383 5.383 8 C -0.348 4.348 9 H 0.092 0.908 10 C -0.249 4.249 11 N -0.630 5.630 12 Si 0.768 3.232 13 H -0.201 1.201 14 H -0.230 1.230 15 H -0.194 1.194 16 C -0.060 4.060 17 N -0.330 5.330 18 C 0.395 3.605 19 O -0.470 6.470 20 C -0.304 4.304 21 C -0.098 4.098 22 N -0.127 5.127 23 N -0.083 5.083 24 C -0.015 4.015 25 C -0.109 4.109 26 C -0.154 4.154 27 C -0.067 4.067 28 N -0.187 5.187 29 C -0.076 4.076 30 C -0.021 4.021 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.193 0.807 37 H 0.064 0.936 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.237 0.763 41 H 0.167 0.833 42 H 0.199 0.801 43 H 0.215 0.785 44 H 0.190 0.810 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -16.571 -5.977 -16.102 23.866 hybrid contribution 0.659 1.387 1.033 1.850 sum -15.912 -4.590 -15.069 22.391 Atomic orbital electron populations 1.22026 0.93214 1.02883 1.02439 1.21631 0.95350 0.95481 0.84737 0.93490 1.23073 0.97437 1.00349 0.95491 1.21685 0.85504 0.94603 0.93132 0.88657 1.42773 1.01888 1.04784 1.88863 1.19097 0.82912 0.93216 1.39608 0.90785 1.25291 0.95086 1.01116 1.03423 1.69837 0.97675 1.35396 1.60124 0.85658 0.76634 0.82920 0.77972 1.20136 1.23044 1.19408 1.23682 0.94876 0.88477 0.98963 1.48261 1.51602 1.28872 1.04271 1.16970 0.78167 0.84041 0.81351 1.90704 1.46244 1.25995 1.84062 1.20301 1.18047 0.98696 0.93387 1.25165 0.93778 0.93635 0.97188 1.77226 1.24327 1.13263 0.97867 1.45666 1.45372 1.12479 1.04782 1.19001 1.04493 0.99090 0.78866 1.21653 0.96135 0.96259 0.96871 1.22524 0.99096 1.01811 0.92014 1.23557 0.92608 0.87783 1.02741 1.67844 1.13781 1.26561 1.10517 1.22797 0.98313 0.97596 0.88934 1.23309 0.94044 0.93157 0.91628 0.91069 0.89718 0.93963 0.89759 0.86418 0.80745 0.93598 0.87774 0.91217 0.76277 0.83286 0.80062 0.78507 0.80983 0.77096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.10 71.98 0.66 -2.70 16 2 C 0.13 3.63 3.42 45.34 0.16 3.78 16 3 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.13 -2.98 6.07 31.78 0.19 -2.79 16 5 C 0.16 4.95 3.72 46.46 0.17 5.12 16 6 H 0.10 2.79 8.09 -2.38 -0.02 2.77 16 7 N -0.74 -31.64 5.05 -316.00 -1.60 -33.24 16 8 C -0.22 -11.47 10.44 84.03 0.88 -10.60 16 9 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 10 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 11 N -0.98 -61.42 13.97 21.65 0.30 -61.11 16 12 Si 0.94 46.16 27.74 68.60 1.90 48.07 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 14 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 15 H -0.27 -12.64 6.52 99.48 0.65 -12.00 16 16 C 0.06 1.81 4.82 86.93 0.42 2.22 16 17 N -0.60 -18.30 3.06 -791.48 -2.42 -20.73 16 18 C 0.60 20.48 7.58 86.66 0.66 21.14 16 19 O -0.59 -22.78 16.17 -4.05 -0.07 -22.85 16 20 C -0.29 -8.76 6.05 -20.14 -0.12 -8.88 16 21 C 0.09 2.52 10.27 85.65 0.88 3.40 16 22 N -0.31 -8.83 11.85 -56.23 -0.67 -9.50 16 23 N -0.31 -8.08 3.77 -185.91 -0.70 -8.78 16 24 C 0.08 1.74 6.70 38.19 0.26 1.99 16 25 C -0.08 -1.48 9.77 22.58 0.22 -1.26 16 26 C -0.13 -1.57 10.10 22.34 0.23 -1.34 16 27 C 0.09 1.14 11.18 84.70 0.95 2.08 16 28 N -0.48 -8.88 10.35 -195.36 -2.02 -10.90 16 29 C 0.08 1.61 10.62 84.83 0.90 2.52 16 30 C 0.13 3.33 10.63 84.24 0.90 4.23 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.04 1.16 7.08 -2.39 -0.02 1.14 16 34 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.12 1.99 7.85 -2.39 -0.02 1.97 16 36 H 0.36 15.83 5.73 -92.71 -0.53 15.30 16 37 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.10 2.09 7.73 -2.39 -0.02 2.07 16 39 H 0.07 2.26 5.91 -2.38 -0.01 2.24 16 40 H 0.22 5.26 4.87 -2.91 -0.01 5.24 16 41 H 0.15 2.73 7.77 -2.91 -0.02 2.71 16 42 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 43 H 0.20 1.03 8.06 -2.91 -0.02 1.00 16 44 H 0.17 2.77 6.74 -2.91 -0.02 2.75 16 45 H 0.21 4.40 7.04 -2.91 -0.02 4.38 16 Total: -1.00 -77.37 372.53 2.98 -74.39 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.45 Total: 28.57 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 7.80 Total: 16.09 kcal Atomic # 7 Polarization: -137.16 SS G_CDS: -7.11 Total: -144.27 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.07 Total: -22.85 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.90 Total: 48.07 kcal Total: -77.37 2.98 -74.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988954291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.412 kcal (2) G-P(sol) polarization free energy of solvation -77.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds