Wall clock time and date at job start Sat Apr 11 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.99602 * 2 1 4 4 C 1.54321 * 109.88316 * 238.90626 * 2 1 3 5 5 C 1.55159 * 102.94466 * 218.38846 * 4 2 1 6 6 H 1.08997 * 111.00348 * 277.38979 * 5 4 2 7 7 N 1.46502 * 111.00370 * 153.57259 * 5 4 2 8 8 C 1.36938 * 119.99750 * 158.18087 * 7 5 4 9 9 H 1.08004 * 119.99708 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99738 * 179.97438 * 8 7 5 11 11 N 1.31626 * 119.99776 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00385 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47279 * 89.99501 * 12 10 8 14 14 H 1.48501 * 109.47021 * 209.99789 * 12 10 8 15 15 H 1.48497 * 109.46609 * 329.99185 * 12 10 8 16 16 C 1.54909 * 101.61493 * 35.48135 * 5 4 2 17 17 N 1.47017 * 109.88435 * 121.09843 * 2 1 3 18 18 C 1.34781 * 125.64837 * 298.38784 * 17 2 1 19 19 O 1.21574 * 119.99865 * 354.21659 * 18 17 2 20 20 C 1.47674 * 120.00076 * 174.20573 * 18 17 2 21 21 C 1.39693 * 120.08229 * 335.20550 * 20 18 17 22 22 C 1.37732 * 119.92647 * 179.69383 * 21 20 18 23 23 C 1.39050 * 120.07270 * 0.59752 * 22 21 20 24 24 N 1.39865 * 119.91934 * 179.69631 * 23 22 21 25 25 C 1.34800 * 126.84627 * 359.69247 * 24 23 22 26 26 N 1.30823 * 108.01705 * 179.83463 * 25 24 23 27 27 C 1.33286 * 109.84897 * 0.43800 * 26 25 24 28 28 N 1.30727 * 109.01593 * 359.72753 * 27 26 25 29 29 C 1.39047 * 120.15681 * 359.67980 * 23 22 21 30 30 C 1.37733 * 120.08025 * 0.02562 * 29 23 22 31 31 H 1.08997 * 109.47156 * 181.09631 * 1 2 3 32 32 H 1.09001 * 109.47107 * 301.09342 * 1 2 3 33 33 H 1.09004 * 109.47124 * 61.09487 * 1 2 3 34 34 H 1.08997 * 110.71966 * 100.02468 * 4 2 1 35 35 H 1.09000 * 110.87101 * 336.82418 * 4 2 1 36 36 H 0.97001 * 119.99969 * 338.18142 * 7 5 4 37 37 H 0.96995 * 119.99922 * 180.02562 * 11 10 8 38 38 H 1.09001 * 110.36658 * 81.84451 * 16 5 4 39 39 H 1.08994 * 110.37016 * 204.16894 * 16 5 4 40 40 H 1.08001 * 120.03770 * 359.97121 * 21 20 18 41 41 H 1.07998 * 119.96468 * 180.27420 * 22 21 20 42 42 H 1.07999 * 125.99399 * 359.97438 * 25 24 23 43 43 H 1.08003 * 125.49715 * 179.70221 * 27 26 25 44 44 H 1.08002 * 119.96213 * 180.02562 * 29 23 22 45 45 H 1.07997 * 120.03822 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 6 3.2877 -1.5142 -0.6925 6 1 4.1656 -0.8690 -0.6611 7 7 3.5532 -2.7195 -1.4817 8 6 4.8008 -3.2838 -1.4711 9 1 5.5889 -2.8405 -0.8805 10 6 5.0522 -4.4262 -2.2185 11 7 6.2513 -4.9689 -2.2079 12 14 3.6889 -5.1933 -3.2394 13 1 3.6972 -4.6012 -4.6012 14 1 3.9074 -6.6590 -3.3356 15 1 2.3783 -4.9296 -2.5928 16 6 2.8156 -1.8794 0.7371 17 7 2.0301 -0.7141 1.1838 18 6 1.8076 -0.3620 2.4657 19 8 1.2325 0.6787 2.7192 20 6 2.2620 -1.2406 3.5622 21 6 2.4370 -2.6081 3.3371 22 6 2.8671 -3.4234 4.3604 23 6 3.1151 -2.8889 5.6199 24 7 3.5457 -3.7210 6.6584 25 6 3.7580 -5.0506 6.5938 26 7 4.1569 -5.4544 7.7725 27 6 4.2023 -4.4212 8.6133 28 7 3.8371 -3.3386 7.9781 29 6 2.9365 -1.5292 5.8491 30 6 2.5125 -0.7069 4.8288 31 1 -0.3633 -1.0274 0.0197 32 1 -0.3633 0.5307 0.8800 33 1 -0.3633 0.4967 -0.8997 34 1 2.3529 -0.0459 -2.0200 35 1 1.3065 -1.4457 -1.6211 36 1 2.8452 -3.1178 -2.0119 37 1 6.4271 -5.7669 -2.7304 38 1 2.1900 -2.7717 0.7136 39 1 3.6731 -2.0334 1.3920 40 1 2.2396 -3.0248 2.3604 41 1 3.0068 -4.4800 4.1858 42 1 3.6247 -5.6729 5.7213 43 1 4.4935 -4.4705 9.6522 44 1 3.1305 -1.1172 6.8285 45 1 2.3735 0.3491 5.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988992047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:37 Heat of formation + Delta-G solvation = 120.679008 kcal Electronic energy + Delta-G solvation = -28989.639415 eV Core-core repulsion = 25010.252856 eV Total energy + Delta-G solvation = -3979.386559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.64040 -40.61993 -39.02467 -37.51091 -34.52942 -34.47080 -32.31776 -31.90587 -31.65571 -30.94805 -29.66549 -29.01805 -25.87961 -25.08659 -23.81114 -23.65068 -22.48159 -21.57659 -21.20512 -20.53909 -19.38828 -18.63743 -17.85843 -17.27777 -16.50221 -16.16401 -16.10819 -15.67010 -15.04181 -14.67927 -14.57940 -14.44304 -14.23833 -13.90066 -13.79152 -13.65934 -13.34592 -13.20044 -12.83871 -12.72436 -12.64532 -12.42159 -12.35657 -11.95819 -11.51782 -11.40426 -11.22274 -11.12367 -10.84995 -10.78423 -10.48873 -10.46415 -10.22888 -10.19520 -9.92950 -9.75015 -9.40305 -9.14563 -8.74524 -8.51580 -7.50570 -5.93872 -3.33074 0.15090 0.99662 1.49641 1.82808 2.55371 2.75080 2.95927 3.24013 3.27705 3.34704 3.56281 3.91957 4.03458 4.34651 4.40997 4.43107 4.56654 4.64666 4.83793 4.87682 4.94931 5.02035 5.11068 5.20701 5.25534 5.38651 5.43212 5.54611 5.58476 5.66588 5.67956 5.73641 5.81137 5.83969 5.93034 5.99361 6.02143 6.06949 6.12400 6.21729 6.24814 6.27899 6.47367 6.58724 6.64557 7.56506 7.63660 7.79493 8.14625 8.24349 9.00456 9.72365 9.89858 11.23459 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008972 B = 0.003408 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.028188 B = 8214.502824 C =10828.644991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.077 0.923 4 C -0.141 4.141 5 C 0.177 3.823 6 H 0.077 0.923 7 N -0.735 5.735 8 C -0.257 4.257 9 H 0.093 0.907 10 C 0.012 3.988 11 N -0.927 5.927 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.067 3.933 17 N -0.604 5.604 18 C 0.573 3.427 19 O -0.543 6.543 20 C -0.129 4.129 21 C -0.064 4.064 22 C -0.138 4.138 23 C 0.167 3.833 24 N -0.330 5.330 25 C 0.267 3.733 26 N -0.538 5.538 27 C 0.206 3.794 28 N -0.315 5.315 29 C -0.122 4.122 30 C -0.041 4.041 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.365 0.635 37 H 0.262 0.738 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.156 0.844 41 H 0.140 0.860 42 H 0.226 0.774 43 H 0.223 0.777 44 H 0.143 0.857 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.570 4.750 13.775 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.095 0.905 4 C -0.180 4.180 5 C 0.065 3.935 6 H 0.094 0.906 7 N -0.376 5.376 8 C -0.386 4.386 9 H 0.110 0.890 10 C -0.185 4.185 11 N -0.573 5.573 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.058 4.058 17 N -0.337 5.337 18 C 0.362 3.638 19 O -0.422 6.422 20 C -0.133 4.133 21 C -0.083 4.083 22 C -0.158 4.158 23 C 0.074 3.926 24 N -0.114 5.114 25 C -0.028 4.028 26 N -0.263 5.263 27 C -0.096 4.096 28 N -0.140 5.140 29 C -0.142 4.142 30 C -0.060 4.060 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.198 0.802 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.173 0.827 41 H 0.158 0.842 42 H 0.242 0.758 43 H 0.240 0.760 44 H 0.161 0.839 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.542 5.606 14.424 18.181 hybrid contribution -0.817 -0.955 -0.895 1.543 sum -10.359 4.651 13.529 17.663 Atomic orbital electron populations 1.22130 0.94967 1.02219 1.02585 1.21525 0.94250 0.96416 0.84220 0.90505 1.23072 0.98913 0.99840 0.96137 1.21284 0.95173 0.88833 0.88203 0.90553 1.42664 1.11231 1.29260 1.54474 1.19057 0.87206 1.07257 1.25112 0.88969 1.24685 0.96223 0.97873 0.99703 1.69697 1.19899 1.23131 1.44572 0.86591 0.82055 0.79052 0.80997 1.20909 1.21598 1.20245 1.23737 0.94610 0.87455 1.00033 1.48503 1.51675 1.29061 1.04449 1.17801 0.79415 0.85128 0.81419 1.90756 1.43422 1.24579 1.83477 1.20028 1.04453 0.94100 0.94671 1.21816 0.94314 0.92326 0.99851 1.20802 1.03363 1.01241 0.90440 1.17767 0.99083 0.90257 0.85524 1.47727 1.48420 1.07154 1.08111 1.26342 0.94547 0.83296 0.98650 1.70659 1.23249 1.31806 1.00599 1.26205 0.97124 0.85115 1.01166 1.78132 1.23625 1.23880 0.88350 1.20841 1.01742 0.90817 1.00799 1.21132 0.93902 1.00663 0.90324 0.92520 0.91639 0.91641 0.89860 0.90501 0.80176 0.92804 0.90989 0.90204 0.82653 0.84216 0.75794 0.76048 0.83903 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.10 37.16 0.34 -1.54 16 2 C 0.14 1.79 3.43 -66.96 -0.23 1.56 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -1.84 6.11 -24.90 -0.15 -1.99 16 5 C 0.18 2.87 3.70 -65.78 -0.24 2.63 16 6 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 7 N -0.73 -14.97 5.06 -51.35 -0.26 -15.23 16 8 C -0.26 -6.47 10.46 -15.06 -0.16 -6.63 16 9 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 10 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 11 N -0.93 -27.14 13.97 55.49 0.78 -26.37 16 12 Si 0.88 20.17 27.74 -169.99 -4.71 15.46 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -5.81 6.52 56.52 0.37 -5.44 16 16 C 0.07 0.96 4.69 -2.51 -0.01 0.95 16 17 N -0.60 -8.34 3.07 -164.15 -0.50 -8.85 16 18 C 0.57 8.36 7.38 -12.41 -0.09 8.26 16 19 O -0.54 -9.19 15.87 5.30 0.08 -9.11 16 20 C -0.13 -1.62 5.67 -104.95 -0.59 -2.22 16 21 C -0.06 -0.72 8.06 -39.22 -0.32 -1.04 16 22 C -0.14 -1.38 9.45 -39.47 -0.37 -1.75 16 23 C 0.17 1.84 6.70 -83.59 -0.56 1.28 16 24 N -0.33 -3.69 3.81 -11.77 -0.04 -3.74 16 25 C 0.27 2.60 11.97 -90.33 -1.08 1.52 16 26 N -0.54 -5.93 11.19 -15.73 -0.18 -6.10 16 27 C 0.21 2.05 13.03 -91.76 -1.20 0.85 16 28 N -0.31 -3.67 12.03 29.30 0.35 -3.31 16 29 C -0.12 -1.34 9.66 -39.47 -0.38 -1.72 16 30 C -0.04 -0.47 9.58 -39.22 -0.38 -0.85 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.86 7.10 -51.93 -0.37 0.49 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.98 7.71 -51.93 -0.40 0.58 16 36 H 0.36 7.30 5.59 -40.82 -0.23 7.07 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 1.01 6.81 -51.93 -0.35 0.66 16 39 H 0.08 1.17 6.85 -51.93 -0.36 0.82 16 40 H 0.16 1.72 4.61 -52.49 -0.24 1.48 16 41 H 0.14 1.03 6.78 -52.49 -0.36 0.68 16 42 H 0.23 1.31 7.08 -52.49 -0.37 0.94 16 43 H 0.22 1.29 8.06 -52.48 -0.42 0.86 16 44 H 0.14 1.48 7.72 -52.49 -0.41 1.08 16 45 H 0.14 1.56 7.84 -52.49 -0.41 1.14 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -32.64 371.16 -10.03 -42.67 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.62 Total: 9.45 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -5.52 Total: -0.47 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: 0.14 Total: -63.59 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.71 Total: 15.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.64 -10.03 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988992047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.349 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds