Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.99602 * 2 1 4 4 C 1.54321 * 109.88316 * 238.90626 * 2 1 3 5 5 C 1.55159 * 102.94466 * 218.38846 * 4 2 1 6 6 H 1.08997 * 111.00348 * 277.38979 * 5 4 2 7 7 N 1.46502 * 111.00370 * 153.57259 * 5 4 2 8 8 C 1.36938 * 119.99750 * 158.18087 * 7 5 4 9 9 H 1.08004 * 119.99708 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99738 * 179.97438 * 8 7 5 11 11 N 1.31626 * 119.99776 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00385 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47279 * 89.99501 * 12 10 8 14 14 H 1.48501 * 109.47021 * 209.99789 * 12 10 8 15 15 H 1.48497 * 109.46609 * 329.99185 * 12 10 8 16 16 C 1.54909 * 101.61493 * 35.48135 * 5 4 2 17 17 N 1.47017 * 109.88435 * 121.09843 * 2 1 3 18 18 C 1.34781 * 125.64837 * 298.38784 * 17 2 1 19 19 O 1.21574 * 119.99865 * 354.21659 * 18 17 2 20 20 C 1.47674 * 120.00076 * 174.20573 * 18 17 2 21 21 C 1.39693 * 120.08229 * 335.20550 * 20 18 17 22 22 C 1.37732 * 119.92647 * 179.69383 * 21 20 18 23 23 C 1.39050 * 120.07270 * 0.59752 * 22 21 20 24 24 N 1.39865 * 119.91934 * 179.69631 * 23 22 21 25 25 C 1.34800 * 126.84627 * 359.69247 * 24 23 22 26 26 N 1.30823 * 108.01705 * 179.83463 * 25 24 23 27 27 C 1.33286 * 109.84897 * 0.43800 * 26 25 24 28 28 N 1.30727 * 109.01593 * 359.72753 * 27 26 25 29 29 C 1.39047 * 120.15681 * 359.67980 * 23 22 21 30 30 C 1.37733 * 120.08025 * 0.02562 * 29 23 22 31 31 H 1.08997 * 109.47156 * 181.09631 * 1 2 3 32 32 H 1.09001 * 109.47107 * 301.09342 * 1 2 3 33 33 H 1.09004 * 109.47124 * 61.09487 * 1 2 3 34 34 H 1.08997 * 110.71966 * 100.02468 * 4 2 1 35 35 H 1.09000 * 110.87101 * 336.82418 * 4 2 1 36 36 H 0.97001 * 119.99969 * 338.18142 * 7 5 4 37 37 H 0.96995 * 119.99922 * 180.02562 * 11 10 8 38 38 H 1.09001 * 110.36658 * 81.84451 * 16 5 4 39 39 H 1.08994 * 110.37016 * 204.16894 * 16 5 4 40 40 H 1.08001 * 120.03770 * 359.97121 * 21 20 18 41 41 H 1.07998 * 119.96468 * 180.27420 * 22 21 20 42 42 H 1.07999 * 125.99399 * 359.97438 * 25 24 23 43 43 H 1.08003 * 125.49715 * 179.70221 * 27 26 25 44 44 H 1.08002 * 119.96213 * 180.02562 * 29 23 22 45 45 H 1.07997 * 120.03822 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 6 3.2877 -1.5142 -0.6925 6 1 4.1656 -0.8690 -0.6611 7 7 3.5532 -2.7195 -1.4817 8 6 4.8008 -3.2838 -1.4711 9 1 5.5889 -2.8405 -0.8805 10 6 5.0522 -4.4262 -2.2185 11 7 6.2513 -4.9689 -2.2079 12 14 3.6889 -5.1933 -3.2394 13 1 3.6972 -4.6012 -4.6012 14 1 3.9074 -6.6590 -3.3356 15 1 2.3783 -4.9296 -2.5928 16 6 2.8156 -1.8794 0.7371 17 7 2.0301 -0.7141 1.1838 18 6 1.8076 -0.3620 2.4657 19 8 1.2325 0.6787 2.7192 20 6 2.2620 -1.2406 3.5622 21 6 2.4370 -2.6081 3.3371 22 6 2.8671 -3.4234 4.3604 23 6 3.1151 -2.8889 5.6199 24 7 3.5457 -3.7210 6.6584 25 6 3.7580 -5.0506 6.5938 26 7 4.1569 -5.4544 7.7725 27 6 4.2023 -4.4212 8.6133 28 7 3.8371 -3.3386 7.9781 29 6 2.9365 -1.5292 5.8491 30 6 2.5125 -0.7069 4.8288 31 1 -0.3633 -1.0274 0.0197 32 1 -0.3633 0.5307 0.8800 33 1 -0.3633 0.4967 -0.8997 34 1 2.3529 -0.0459 -2.0200 35 1 1.3065 -1.4457 -1.6211 36 1 2.8452 -3.1178 -2.0119 37 1 6.4271 -5.7669 -2.7304 38 1 2.1900 -2.7717 0.7136 39 1 3.6731 -2.0334 1.3920 40 1 2.2396 -3.0248 2.3604 41 1 3.0068 -4.4800 4.1858 42 1 3.6247 -5.6729 5.7213 43 1 4.4935 -4.4705 9.6522 44 1 3.1305 -1.1172 6.8285 45 1 2.3735 0.3491 5.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988992047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 102.686514 kcal Electronic energy + Delta-G solvation = -28990.419628 eV Core-core repulsion = 25010.252856 eV Total energy + Delta-G solvation = -3980.166772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.41565 -41.68780 -39.98672 -38.72254 -36.09879 -35.39744 -33.55438 -33.20348 -32.72885 -31.81958 -30.64952 -30.39730 -26.95073 -26.08854 -25.35190 -24.53470 -23.53182 -22.43746 -22.19402 -21.81289 -20.46032 -19.64184 -19.46972 -18.36396 -17.68067 -17.07557 -16.96313 -16.66554 -16.35839 -15.96773 -15.60586 -15.40881 -15.27462 -15.11562 -14.88538 -14.69991 -14.57669 -14.35439 -14.10214 -13.81046 -13.76307 -13.52898 -13.29404 -13.15327 -12.93357 -12.84058 -12.39544 -12.17027 -12.02542 -12.01495 -11.82988 -11.78286 -11.50760 -11.27525 -11.11176 -11.03184 -10.91910 -10.25158 -9.79233 -9.53615 -9.29619 -7.97534 -5.33703 -0.71676 0.14348 0.66611 1.05459 1.44885 1.48264 1.55397 1.68147 1.82813 1.88316 2.53621 2.63240 3.20888 3.25967 3.31000 3.32409 3.59694 3.65704 3.78354 3.82017 3.86998 3.91571 4.06990 4.11261 4.26391 4.29337 4.38823 4.45728 4.47359 4.71371 4.72273 4.78991 4.85535 4.87981 4.90862 5.05593 5.08655 5.13191 5.20644 5.26121 5.29908 5.35669 5.41306 5.47537 5.81864 5.85088 6.25063 6.42816 6.87454 7.01727 7.11415 7.83921 8.03953 9.23155 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008972 B = 0.003408 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.028188 B = 8214.502824 C =10828.644991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.075 0.925 4 C -0.126 4.126 5 C 0.167 3.833 6 H 0.061 0.939 7 N -0.735 5.735 8 C -0.232 4.232 9 H 0.059 0.941 10 C -0.057 4.057 11 N -0.982 5.982 12 Si 0.950 3.050 13 H -0.283 1.283 14 H -0.302 1.302 15 H -0.242 1.242 16 C 0.080 3.920 17 N -0.602 5.602 18 C 0.572 3.428 19 O -0.572 6.572 20 C -0.146 4.146 21 C -0.064 4.064 22 C -0.132 4.132 23 C 0.165 3.835 24 N -0.342 5.342 25 C 0.270 3.730 26 N -0.560 5.560 27 C 0.209 3.791 28 N -0.345 5.345 29 C -0.125 4.125 30 C -0.042 4.042 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.371 0.629 37 H 0.257 0.743 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.159 0.841 41 H 0.170 0.830 42 H 0.260 0.740 43 H 0.255 0.745 44 H 0.145 0.855 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.575 4.129 13.662 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.093 0.907 4 C -0.165 4.165 5 C 0.056 3.944 6 H 0.079 0.921 7 N -0.377 5.377 8 C -0.363 4.363 9 H 0.077 0.923 10 C -0.249 4.249 11 N -0.632 5.632 12 Si 0.778 3.222 13 H -0.210 1.210 14 H -0.229 1.229 15 H -0.166 1.166 16 C -0.045 4.045 17 N -0.335 5.335 18 C 0.363 3.637 19 O -0.453 6.453 20 C -0.150 4.150 21 C -0.082 4.082 22 C -0.152 4.152 23 C 0.072 3.928 24 N -0.125 5.125 25 C -0.025 4.025 26 N -0.286 5.286 27 C -0.093 4.093 28 N -0.170 5.170 29 C -0.145 4.145 30 C -0.062 4.062 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.205 0.795 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.177 0.823 41 H 0.187 0.813 42 H 0.275 0.725 43 H 0.270 0.730 44 H 0.163 0.837 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.598 5.035 14.335 19.114 hybrid contribution -0.122 -0.690 -0.734 1.015 sum -11.720 4.346 13.601 18.472 Atomic orbital electron populations 1.22061 0.93686 1.02462 1.02872 1.21638 0.95235 0.96195 0.83638 0.90722 1.22996 0.97289 0.99815 0.96392 1.21416 0.96299 0.87515 0.89125 0.92078 1.42541 1.09561 1.30258 1.55351 1.18976 0.88232 1.06295 1.22778 0.92277 1.25452 0.98564 0.99000 1.01856 1.69884 1.22627 1.24027 1.46615 0.85493 0.80532 0.77011 0.79195 1.20970 1.22908 1.16591 1.23458 0.94725 0.87973 0.98382 1.48505 1.51391 1.28865 1.04699 1.18080 0.78880 0.84944 0.81846 1.90737 1.44820 1.25883 1.83844 1.19985 1.05985 0.94589 0.94425 1.21839 0.94281 0.91796 1.00333 1.21062 1.02095 1.02546 0.89500 1.17915 0.98639 0.90284 0.85986 1.47783 1.49050 1.07663 1.08044 1.27097 0.92961 0.83035 0.99373 1.70706 1.24195 1.32388 1.01345 1.26906 0.95678 0.84384 1.02313 1.78104 1.24966 1.25044 0.88899 1.20876 1.01765 0.91113 1.00739 1.21144 0.93963 1.00866 0.90196 0.92159 0.93331 0.89456 0.88513 0.89199 0.79464 0.93414 0.89851 0.90803 0.82347 0.81277 0.72467 0.72964 0.83677 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.10 71.98 0.66 -2.55 16 2 C 0.14 3.22 3.43 45.34 0.16 3.37 16 3 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 4 C -0.13 -2.95 6.11 31.78 0.19 -2.76 16 5 C 0.17 5.15 3.70 46.38 0.17 5.32 16 6 H 0.06 2.09 8.11 -2.39 -0.02 2.07 16 7 N -0.73 -28.55 5.06 -316.37 -1.60 -30.15 16 8 C -0.23 -11.66 10.46 84.03 0.88 -10.78 16 9 H 0.06 3.32 8.06 -2.91 -0.02 3.29 16 10 C -0.06 -3.04 5.50 84.86 0.47 -2.58 16 11 N -0.98 -58.78 13.97 21.65 0.30 -58.48 16 12 Si 0.95 40.79 27.74 68.60 1.90 42.69 16 13 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 14 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 15 H -0.24 -8.89 6.52 99.48 0.65 -8.24 16 16 C 0.08 2.17 4.69 86.85 0.41 2.57 16 17 N -0.60 -15.87 3.07 -791.52 -2.43 -18.30 16 18 C 0.57 16.37 7.38 86.74 0.64 17.01 16 19 O -0.57 -19.30 15.87 -3.95 -0.06 -19.36 16 20 C -0.15 -3.60 5.67 -20.08 -0.11 -3.71 16 21 C -0.06 -1.34 8.06 22.50 0.18 -1.16 16 22 C -0.13 -2.36 9.45 22.35 0.21 -2.15 16 23 C 0.17 3.42 6.70 38.25 0.26 3.68 16 24 N -0.34 -7.13 3.81 -191.16 -0.73 -7.86 16 25 C 0.27 4.70 11.97 180.25 2.16 6.86 16 26 N -0.56 -11.39 11.19 -203.69 -2.28 -13.67 16 27 C 0.21 3.84 13.03 180.75 2.35 6.20 16 28 N -0.35 -7.70 12.03 -61.21 -0.74 -8.43 16 29 C -0.12 -2.69 9.66 22.34 0.22 -2.48 16 30 C -0.04 -0.97 9.58 22.51 0.22 -0.75 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.20 7.10 -2.39 -0.02 1.19 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 1.92 7.71 -2.39 -0.02 1.91 16 36 H 0.37 13.62 5.59 -92.71 -0.52 13.10 16 37 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.08 2.12 6.81 -2.39 -0.02 2.10 16 39 H 0.07 2.11 6.85 -2.39 -0.02 2.09 16 40 H 0.16 3.18 4.61 -2.91 -0.01 3.17 16 41 H 0.17 1.94 6.78 -2.91 -0.02 1.92 16 42 H 0.26 2.20 7.08 -2.91 -0.02 2.18 16 43 H 0.25 2.46 8.06 -2.91 -0.02 2.43 16 44 H 0.15 3.01 7.72 -2.91 -0.02 2.98 16 45 H 0.14 3.19 7.84 -2.91 -0.02 3.17 16 Total: -1.00 -71.73 371.16 3.88 -67.85 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.46 Total: 29.61 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 9.05 Total: 16.09 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -7.47 Total: -136.89 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.06 Total: -19.36 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.90 Total: 42.69 kcal Total: -71.73 3.88 -67.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988992047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.541 kcal (2) G-P(sol) polarization free energy of solvation -71.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds