Wall clock time and date at job start Sat Apr 11 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.00125 * 2 1 4 4 C 1.54324 * 109.88380 * 238.90537 * 2 1 3 5 5 C 1.55160 * 102.94320 * 262.77542 * 4 2 1 6 6 H 1.09000 * 111.00441 * 82.60984 * 5 4 2 7 7 N 1.46498 * 111.00298 * 206.42125 * 5 4 2 8 8 C 1.36935 * 119.99891 * 204.99853 * 7 5 4 9 9 H 1.08000 * 120.00336 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00207 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99954 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00223 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47038 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47094 * 120.00285 * 12 10 8 15 15 H 1.48500 * 109.47198 * 240.00396 * 12 10 8 16 16 C 1.55125 * 101.48254 * 324.33118 * 5 4 2 17 17 N 1.47027 * 109.88423 * 121.09615 * 2 1 3 18 18 C 1.34770 * 125.64745 * 300.43781 * 17 2 1 19 19 O 1.21572 * 120.00293 * 5.72831 * 18 17 2 20 20 C 1.47674 * 119.99890 * 185.72589 * 18 17 2 21 21 C 1.39699 * 120.08011 * 204.56483 * 20 18 17 22 22 C 1.37732 * 119.92662 * 180.25416 * 21 20 18 23 23 C 1.39046 * 120.07289 * 359.42632 * 22 21 20 24 24 N 1.39865 * 119.92228 * 180.29863 * 23 22 21 25 25 C 1.34803 * 126.84519 * 0.29645 * 24 23 22 26 26 N 1.30821 * 108.01931 * 179.97438 * 25 24 23 27 27 C 1.33295 * 109.84808 * 359.97438 * 26 25 24 28 28 N 1.30722 * 109.01136 * 359.75572 * 27 26 25 29 29 C 1.39053 * 120.15638 * 0.59850 * 23 22 21 30 30 C 1.37724 * 120.07958 * 359.67794 * 29 23 22 31 31 H 1.09002 * 109.46944 * 300.35470 * 1 2 3 32 32 H 1.08996 * 109.47185 * 60.35939 * 1 2 3 33 33 H 1.09006 * 109.46858 * 180.35980 * 1 2 3 34 34 H 1.08998 * 110.71650 * 21.13792 * 4 2 1 35 35 H 1.08994 * 110.72283 * 144.23163 * 4 2 1 36 36 H 0.97001 * 120.00336 * 25.00488 * 7 5 4 37 37 H 0.96999 * 119.99908 * 180.02562 * 11 10 8 38 38 H 1.09007 * 110.50027 * 278.45299 * 16 5 4 39 39 H 1.09004 * 110.34393 * 156.06437 * 16 5 4 40 40 H 1.08006 * 120.03856 * 359.97438 * 21 20 18 41 41 H 1.07996 * 119.96554 * 179.69837 * 22 21 20 42 42 H 1.07995 * 125.98763 * 359.94273 * 25 24 23 43 43 H 1.07996 * 125.48708 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.96003 * 179.70175 * 29 23 22 45 45 H 1.07994 * 120.04247 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2427 5 6 2.3519 -2.1695 -0.6924 6 1 1.4453 -2.7739 -0.6611 7 7 3.3937 -2.8312 -1.4817 8 6 3.4568 -4.1985 -1.5229 9 1 2.7384 -4.7891 -0.9739 10 6 4.4436 -4.8255 -2.2712 11 7 5.3189 -4.1058 -2.9408 12 14 4.5302 -6.6907 -2.3268 13 1 3.4409 -7.2618 -1.4946 14 1 4.3743 -7.1518 -3.7297 15 1 5.8438 -7.1411 -1.8007 16 6 2.8613 -1.8465 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.7754 -0.3845 2.4657 19 8 0.9950 0.5125 2.7192 20 6 2.4444 -1.1130 3.5622 21 6 1.8566 -1.1662 4.8284 22 6 2.4859 -1.8421 5.8503 23 6 3.6991 -2.4812 5.6196 24 7 4.3322 -3.1719 6.6579 25 6 3.8906 -3.3104 7.9240 26 7 4.7669 -4.0244 8.5825 27 6 5.7750 -4.3591 7.7772 28 7 5.5517 -3.8653 6.5876 29 6 4.2873 -2.4299 4.3607 30 6 3.6665 -1.7510 3.3358 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5082 -0.8932 33 1 -0.3633 -1.0277 0.0065 34 1 1.2918 -0.7890 -2.0200 35 1 2.9638 -0.2813 -1.6201 36 1 4.0388 -2.3008 -1.9751 37 1 6.0082 -4.5440 -3.4640 38 1 3.9124 -1.5588 0.7114 39 1 2.7179 -2.7049 1.3932 40 1 0.9120 -0.6740 5.0071 41 1 2.0344 -1.8795 6.8306 42 1 2.9742 -2.9028 8.3246 43 1 6.6355 -4.9468 8.0608 44 1 5.2321 -2.9234 4.1863 45 1 4.1241 -1.7113 2.3584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988992048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:40 Heat of formation + Delta-G solvation = 117.328310 kcal Electronic energy + Delta-G solvation = -28942.039704 eV Core-core repulsion = 24962.507848 eV Total energy + Delta-G solvation = -3979.531856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.65428 -40.57585 -38.99280 -37.41376 -34.54404 -34.28323 -32.34273 -31.75221 -31.40491 -31.08396 -29.57013 -28.42137 -25.77444 -25.02944 -23.93398 -23.74668 -22.58789 -21.55377 -21.33985 -20.36515 -19.27805 -18.66313 -17.44819 -17.31762 -16.19435 -16.18364 -15.89812 -15.62029 -15.12531 -14.64333 -14.52216 -14.51509 -14.19880 -14.01485 -13.56422 -13.46282 -13.19398 -13.10999 -13.03236 -12.77780 -12.50149 -12.45418 -11.97302 -11.88392 -11.35129 -11.24633 -11.14384 -11.01825 -10.76767 -10.70519 -10.48315 -10.30885 -10.24580 -10.07763 -9.87555 -9.79715 -9.39211 -9.08847 -8.73177 -8.45430 -7.17508 -5.92873 -3.24224 0.15385 1.00322 1.49955 1.82180 2.54009 2.77662 3.02930 3.34623 3.41446 3.42963 3.58438 3.86452 4.03902 4.37330 4.40180 4.48278 4.53779 4.68839 4.93213 4.96304 5.02348 5.12085 5.17883 5.22826 5.39373 5.50364 5.53975 5.61555 5.70754 5.74105 5.78091 5.80279 5.96467 6.00405 6.01703 6.03778 6.08499 6.12485 6.20640 6.28513 6.36595 6.45439 6.54536 6.64911 6.74223 7.56919 7.62094 7.64733 8.19494 8.24794 9.36880 9.89079 10.23941 11.28866 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.003524 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.742107 B = 7944.693132 C =11001.329956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.072 0.928 4 C -0.139 4.139 5 C 0.174 3.826 6 H 0.070 0.930 7 N -0.711 5.711 8 C -0.251 4.251 9 H 0.073 0.927 10 C -0.006 4.006 11 N -0.928 5.928 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.065 3.935 17 N -0.602 5.602 18 C 0.571 3.429 19 O -0.545 6.545 20 C -0.128 4.128 21 C -0.038 4.038 22 C -0.144 4.144 23 C 0.165 3.835 24 N -0.329 5.329 25 C 0.261 3.739 26 N -0.538 5.538 27 C 0.205 3.795 28 N -0.308 5.308 29 C -0.116 4.116 30 C -0.068 4.068 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.137 0.863 42 H 0.224 0.776 43 H 0.224 0.776 44 H 0.145 0.855 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.337 6.249 17.015 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.178 4.178 5 C 0.061 3.939 6 H 0.088 0.912 7 N -0.350 5.350 8 C -0.382 4.382 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.575 5.575 12 Si 0.737 3.263 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.061 4.061 17 N -0.334 5.334 18 C 0.361 3.639 19 O -0.424 6.424 20 C -0.131 4.131 21 C -0.058 4.058 22 C -0.165 4.165 23 C 0.072 3.928 24 N -0.113 5.113 25 C -0.034 4.034 26 N -0.264 5.264 27 C -0.097 4.097 28 N -0.133 5.133 29 C -0.136 4.136 30 C -0.086 4.086 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.240 0.760 43 H 0.240 0.760 44 H 0.163 0.837 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.282 6.321 16.925 18.823 hybrid contribution 0.351 -0.899 -0.136 0.975 sum -4.931 5.421 16.789 18.319 Atomic orbital electron populations 1.22154 0.94829 1.02418 1.02597 1.21547 0.94619 0.95821 0.84396 0.91036 1.23055 1.01850 0.97102 0.95817 1.21345 0.92906 0.91339 0.88294 0.91241 1.42334 1.33289 1.04094 1.55289 1.19285 1.11325 0.82432 1.25155 0.90897 1.24762 0.97875 0.98003 0.99620 1.69663 1.18905 1.34150 1.34754 0.86138 0.77462 0.85288 0.77393 1.20441 1.21701 1.21687 1.23883 0.94607 0.87308 1.00289 1.48505 1.49817 1.30700 1.04422 1.17797 0.81492 0.83167 0.81491 1.90738 1.36152 1.32058 1.83496 1.20060 0.96729 1.01618 0.94733 1.21009 0.99432 0.95048 0.90273 1.20691 0.94057 1.01017 1.00761 1.17770 0.92835 0.95185 0.87036 1.47736 1.16380 1.38213 1.09002 1.26243 0.99942 0.95601 0.81607 1.70639 1.03997 1.18055 1.33714 1.26227 0.98570 0.98433 0.86456 1.78215 0.98010 1.14148 1.22911 1.20945 1.01506 1.00751 0.90357 1.21983 0.93722 0.92733 1.00210 0.91199 0.91933 0.92412 0.90011 0.90488 0.77803 0.93307 0.90814 0.90719 0.83659 0.84517 0.76022 0.75985 0.83675 0.82667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.05 37.16 0.34 -1.76 16 2 C 0.14 1.93 3.53 -66.95 -0.24 1.69 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.14 -2.03 6.13 -24.89 -0.15 -2.18 16 5 C 0.17 3.04 3.73 -65.66 -0.24 2.80 16 6 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 7 N -0.71 -15.92 5.24 -51.24 -0.27 -16.18 16 8 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 9 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 10 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 11 N -0.93 -26.30 13.06 55.49 0.72 -25.58 16 12 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 C 0.06 1.00 4.69 -2.41 -0.01 0.99 16 17 N -0.60 -8.80 3.08 -164.04 -0.50 -9.31 16 18 C 0.57 8.54 7.46 -12.41 -0.09 8.44 16 19 O -0.55 -9.24 15.31 5.30 0.08 -9.16 16 20 C -0.13 -1.64 5.67 -104.95 -0.60 -2.23 16 21 C -0.04 -0.40 9.58 -39.22 -0.38 -0.78 16 22 C -0.14 -1.28 9.45 -39.47 -0.37 -1.66 16 23 C 0.16 1.81 6.70 -83.59 -0.56 1.25 16 24 N -0.33 -3.65 3.81 -11.77 -0.04 -3.69 16 25 C 0.26 2.33 11.97 -90.33 -1.08 1.25 16 26 N -0.54 -5.67 11.19 -15.73 -0.18 -5.85 16 27 C 0.21 2.09 13.03 -91.76 -1.20 0.89 16 28 N -0.31 -3.79 12.03 29.30 0.35 -3.43 16 29 C -0.12 -1.40 9.66 -39.47 -0.38 -1.78 16 30 C -0.07 -0.84 8.05 -39.22 -0.32 -1.16 16 31 H 0.07 0.99 6.58 -51.93 -0.34 0.65 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.12 7.83 -51.93 -0.41 0.72 16 35 H 0.08 1.13 8.01 -51.93 -0.42 0.72 16 36 H 0.39 9.27 7.77 -40.82 -0.32 8.95 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.07 1.17 6.84 -51.92 -0.36 0.81 16 39 H 0.07 1.17 6.81 -51.93 -0.35 0.81 16 40 H 0.15 1.38 7.84 -52.48 -0.41 0.97 16 41 H 0.14 0.72 6.78 -52.49 -0.36 0.36 16 42 H 0.22 0.93 7.08 -52.49 -0.37 0.56 16 43 H 0.22 1.40 8.06 -52.49 -0.42 0.97 16 44 H 0.15 1.81 7.72 -52.48 -0.41 1.40 16 45 H 0.16 1.99 4.58 -52.49 -0.24 1.75 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -32.07 373.30 -10.39 -42.46 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.63 Total: 9.89 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -5.53 Total: -1.03 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: 0.08 Total: -64.04 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.07 -10.39 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988992048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.789 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds