Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.00125 * 2 1 4 4 C 1.54324 * 109.88380 * 238.90537 * 2 1 3 5 5 C 1.55160 * 102.94320 * 262.77542 * 4 2 1 6 6 H 1.09000 * 111.00441 * 82.60984 * 5 4 2 7 7 N 1.46498 * 111.00298 * 206.42125 * 5 4 2 8 8 C 1.36935 * 119.99891 * 204.99853 * 7 5 4 9 9 H 1.08000 * 120.00336 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00207 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99954 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00223 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47038 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47094 * 120.00285 * 12 10 8 15 15 H 1.48500 * 109.47198 * 240.00396 * 12 10 8 16 16 C 1.55125 * 101.48254 * 324.33118 * 5 4 2 17 17 N 1.47027 * 109.88423 * 121.09615 * 2 1 3 18 18 C 1.34770 * 125.64745 * 300.43781 * 17 2 1 19 19 O 1.21572 * 120.00293 * 5.72831 * 18 17 2 20 20 C 1.47674 * 119.99890 * 185.72589 * 18 17 2 21 21 C 1.39699 * 120.08011 * 204.56483 * 20 18 17 22 22 C 1.37732 * 119.92662 * 180.25416 * 21 20 18 23 23 C 1.39046 * 120.07289 * 359.42632 * 22 21 20 24 24 N 1.39865 * 119.92228 * 180.29863 * 23 22 21 25 25 C 1.34803 * 126.84519 * 0.29645 * 24 23 22 26 26 N 1.30821 * 108.01931 * 179.97438 * 25 24 23 27 27 C 1.33295 * 109.84808 * 359.97438 * 26 25 24 28 28 N 1.30722 * 109.01136 * 359.75572 * 27 26 25 29 29 C 1.39053 * 120.15638 * 0.59850 * 23 22 21 30 30 C 1.37724 * 120.07958 * 359.67794 * 29 23 22 31 31 H 1.09002 * 109.46944 * 300.35470 * 1 2 3 32 32 H 1.08996 * 109.47185 * 60.35939 * 1 2 3 33 33 H 1.09006 * 109.46858 * 180.35980 * 1 2 3 34 34 H 1.08998 * 110.71650 * 21.13792 * 4 2 1 35 35 H 1.08994 * 110.72283 * 144.23163 * 4 2 1 36 36 H 0.97001 * 120.00336 * 25.00488 * 7 5 4 37 37 H 0.96999 * 119.99908 * 180.02562 * 11 10 8 38 38 H 1.09007 * 110.50027 * 278.45299 * 16 5 4 39 39 H 1.09004 * 110.34393 * 156.06437 * 16 5 4 40 40 H 1.08006 * 120.03856 * 359.97438 * 21 20 18 41 41 H 1.07996 * 119.96554 * 179.69837 * 22 21 20 42 42 H 1.07995 * 125.98763 * 359.94273 * 25 24 23 43 43 H 1.07996 * 125.48708 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.96003 * 179.70175 * 29 23 22 45 45 H 1.07994 * 120.04247 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2427 5 6 2.3519 -2.1695 -0.6924 6 1 1.4453 -2.7739 -0.6611 7 7 3.3937 -2.8312 -1.4817 8 6 3.4568 -4.1985 -1.5229 9 1 2.7384 -4.7891 -0.9739 10 6 4.4436 -4.8255 -2.2712 11 7 5.3189 -4.1058 -2.9408 12 14 4.5302 -6.6907 -2.3268 13 1 3.4409 -7.2618 -1.4946 14 1 4.3743 -7.1518 -3.7297 15 1 5.8438 -7.1411 -1.8007 16 6 2.8613 -1.8465 0.7368 17 7 2.0300 -0.7141 1.1839 18 6 1.7754 -0.3845 2.4657 19 8 0.9950 0.5125 2.7192 20 6 2.4444 -1.1130 3.5622 21 6 1.8566 -1.1662 4.8284 22 6 2.4859 -1.8421 5.8503 23 6 3.6991 -2.4812 5.6196 24 7 4.3322 -3.1719 6.6579 25 6 3.8906 -3.3104 7.9240 26 7 4.7669 -4.0244 8.5825 27 6 5.7750 -4.3591 7.7772 28 7 5.5517 -3.8653 6.5876 29 6 4.2873 -2.4299 4.3607 30 6 3.6665 -1.7510 3.3358 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5082 -0.8932 33 1 -0.3633 -1.0277 0.0065 34 1 1.2918 -0.7890 -2.0200 35 1 2.9638 -0.2813 -1.6201 36 1 4.0388 -2.3008 -1.9751 37 1 6.0082 -4.5440 -3.4640 38 1 3.9124 -1.5588 0.7114 39 1 2.7179 -2.7049 1.3932 40 1 0.9120 -0.6740 5.0071 41 1 2.0344 -1.8795 6.8306 42 1 2.9742 -2.9028 8.3246 43 1 6.6355 -4.9468 8.0608 44 1 5.2321 -2.9234 4.1863 45 1 4.1241 -1.7113 2.3584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988992048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = 100.137665 kcal Electronic energy + Delta-G solvation = -28942.785147 eV Core-core repulsion = 24962.507848 eV Total energy + Delta-G solvation = -3980.277298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.40654 -41.68600 -39.97917 -38.67550 -36.00304 -35.40860 -33.42864 -33.08366 -32.60229 -31.95550 -30.48074 -29.98976 -26.94120 -26.13687 -25.55332 -24.57496 -23.67987 -22.37405 -22.35965 -21.62122 -20.41591 -19.46999 -19.31649 -18.42301 -17.26241 -17.04207 -16.93739 -16.77892 -16.34822 -15.95568 -15.68365 -15.35793 -15.23908 -15.06773 -15.02598 -14.65150 -14.47631 -14.36238 -14.08487 -13.88291 -13.61041 -13.30892 -13.17711 -13.07861 -13.00711 -12.82533 -12.33889 -12.15386 -12.14054 -12.02374 -11.89851 -11.72632 -11.44989 -11.26359 -11.11092 -11.03947 -10.86303 -10.23600 -9.78336 -9.51471 -9.04873 -7.96132 -5.25484 -0.69957 0.15782 0.69071 1.07777 1.47955 1.49822 1.57993 1.69160 1.83854 1.89884 2.55343 2.64447 3.23654 3.29262 3.32257 3.36024 3.64705 3.71642 3.81878 3.89189 3.90625 3.96410 4.09217 4.11338 4.26616 4.33899 4.42029 4.47474 4.51278 4.70765 4.72236 4.80802 4.89467 4.90514 4.92260 5.03610 5.10712 5.17170 5.23227 5.24435 5.29666 5.35181 5.44676 5.49660 5.54476 5.88909 6.25279 6.44415 6.88351 7.02820 7.33636 8.04382 8.28570 9.26636 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.003524 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.742107 B = 7944.693132 C =11001.329956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 H 0.078 0.922 4 C -0.127 4.127 5 C 0.166 3.834 6 H 0.066 0.934 7 N -0.721 5.721 8 C -0.241 4.241 9 H 0.077 0.923 10 C -0.065 4.065 11 N -0.964 5.964 12 Si 0.964 3.036 13 H -0.267 1.267 14 H -0.295 1.295 15 H -0.296 1.296 16 C 0.083 3.917 17 N -0.603 5.603 18 C 0.571 3.429 19 O -0.566 6.566 20 C -0.147 4.147 21 C -0.033 4.033 22 C -0.125 4.125 23 C 0.165 3.835 24 N -0.343 5.343 25 C 0.272 3.728 26 N -0.560 5.560 27 C 0.208 3.792 28 N -0.352 5.352 29 C -0.131 4.131 30 C -0.072 4.072 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.378 0.622 37 H 0.251 0.749 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.160 0.840 41 H 0.183 0.817 42 H 0.270 0.730 43 H 0.251 0.749 44 H 0.132 0.868 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.078 6.357 19.336 21.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.166 4.166 5 C 0.056 3.944 6 H 0.084 0.916 7 N -0.360 5.360 8 C -0.373 4.373 9 H 0.095 0.905 10 C -0.258 4.258 11 N -0.614 5.614 12 Si 0.793 3.207 13 H -0.192 1.192 14 H -0.222 1.222 15 H -0.223 1.223 16 C -0.043 4.043 17 N -0.335 5.335 18 C 0.362 3.638 19 O -0.447 6.447 20 C -0.151 4.151 21 C -0.053 4.053 22 C -0.145 4.145 23 C 0.072 3.928 24 N -0.127 5.127 25 C -0.022 4.022 26 N -0.286 5.286 27 C -0.094 4.094 28 N -0.177 5.177 29 C -0.151 4.151 30 C -0.091 4.091 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.211 0.789 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.178 0.822 41 H 0.201 0.799 42 H 0.285 0.715 43 H 0.266 0.734 44 H 0.150 0.850 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.062 6.440 19.281 21.520 hybrid contribution 0.846 -0.893 -0.711 1.421 sum -6.216 5.547 18.570 20.353 Atomic orbital electron populations 1.22085 0.93762 1.02232 1.03103 1.21621 0.95413 0.95835 0.83599 0.90439 1.22953 1.02244 0.94930 0.96458 1.21499 0.91422 0.92598 0.88920 0.91629 1.42423 1.34216 1.03268 1.56068 1.19615 1.10308 0.83957 1.23418 0.90470 1.25436 0.98354 1.01563 1.00467 1.69793 1.19879 1.35359 1.36343 0.85223 0.77240 0.81198 0.76995 1.19156 1.22196 1.22349 1.23482 0.94356 0.87712 0.98739 1.48506 1.49681 1.30374 1.04905 1.18109 0.81100 0.82899 0.81717 1.90720 1.37253 1.33009 1.83739 1.20013 0.97084 1.02725 0.95234 1.21234 0.99793 0.94719 0.89515 1.21074 0.92588 0.98673 1.02192 1.17939 0.93349 0.94949 0.86582 1.47782 1.16438 1.38745 1.09694 1.27220 1.00557 0.93925 0.80465 1.70694 1.04628 1.19075 1.34196 1.26853 0.99112 0.97595 0.85818 1.78187 0.99394 1.15739 1.24347 1.20864 1.01471 1.01415 0.91341 1.21781 0.93968 0.93417 0.99906 0.92328 0.89782 0.92861 0.88785 0.90618 0.78909 0.93989 0.91346 0.90902 0.82228 0.79934 0.71481 0.73354 0.84958 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.05 71.98 0.65 -3.08 16 2 C 0.14 3.68 3.53 45.34 0.16 3.84 16 3 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.13 -3.60 6.13 31.78 0.19 -3.41 16 5 C 0.17 5.80 3.73 46.46 0.17 5.97 16 6 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 7 N -0.72 -32.64 5.24 -316.02 -1.66 -34.29 16 8 C -0.24 -12.35 9.96 84.03 0.84 -11.51 16 9 H 0.08 3.82 7.83 -2.91 -0.02 3.79 16 10 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 11 N -0.96 -55.85 13.06 21.65 0.28 -55.57 16 12 Si 0.96 44.19 29.55 68.60 2.03 46.22 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 14 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 15 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 16 C 0.08 2.58 4.69 86.93 0.41 2.99 16 17 N -0.60 -17.37 3.08 -791.19 -2.44 -19.80 16 18 C 0.57 16.69 7.46 86.74 0.65 17.33 16 19 O -0.57 -18.63 15.31 -3.94 -0.06 -18.69 16 20 C -0.15 -3.64 5.67 -20.08 -0.11 -3.75 16 21 C -0.03 -0.62 9.58 22.50 0.22 -0.40 16 22 C -0.12 -1.79 9.45 22.34 0.21 -1.58 16 23 C 0.17 3.34 6.70 38.25 0.26 3.59 16 24 N -0.34 -6.94 3.81 -191.16 -0.73 -7.66 16 25 C 0.27 3.97 11.97 180.25 2.16 6.12 16 26 N -0.56 -10.49 11.19 -203.69 -2.28 -12.77 16 27 C 0.21 3.95 13.03 180.75 2.35 6.30 16 28 N -0.35 -8.41 12.03 -61.21 -0.74 -9.15 16 29 C -0.13 -3.19 9.66 22.34 0.22 -2.97 16 30 C -0.07 -1.81 8.05 22.50 0.18 -1.63 16 31 H 0.06 1.58 6.58 -2.39 -0.02 1.56 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.09 2.44 7.83 -2.39 -0.02 2.42 16 35 H 0.08 2.19 8.01 -2.39 -0.02 2.17 16 36 H 0.38 18.47 7.77 -92.71 -0.72 17.75 16 37 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.07 2.23 6.84 -2.38 -0.02 2.22 16 39 H 0.07 2.30 6.81 -2.38 -0.02 2.29 16 40 H 0.16 2.54 7.84 -2.91 -0.02 2.51 16 41 H 0.18 0.86 6.78 -2.91 -0.02 0.84 16 42 H 0.27 0.82 7.08 -2.91 -0.02 0.80 16 43 H 0.25 2.77 8.06 -2.91 -0.02 2.75 16 44 H 0.13 3.49 7.72 -2.91 -0.02 3.47 16 45 H 0.14 3.85 4.58 -2.91 -0.01 3.83 16 Total: -1.00 -70.36 373.30 3.75 -66.61 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.32 Total: 30.36 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 9.02 Total: 14.75 kcal Atomic # 7 Polarization: -131.69 SS G_CDS: -7.55 Total: -139.25 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.06 Total: -18.69 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -70.36 3.75 -66.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988992048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.747 kcal (2) G-P(sol) polarization free energy of solvation -70.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds