Wall clock time and date at job start Sat Apr 11 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.99779 * 2 1 4 4 C 1.54321 * 109.88457 * 121.09511 * 2 1 3 5 5 C 1.55160 * 102.94600 * 97.22393 * 4 2 1 6 6 H 1.08999 * 111.00783 * 277.39652 * 5 4 2 7 7 N 1.46499 * 111.00961 * 153.57432 * 5 4 2 8 8 C 1.36935 * 119.99942 * 154.99970 * 7 5 4 9 9 H 1.07999 * 120.00083 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99632 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00227 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99548 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46845 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47399 * 299.99577 * 12 10 8 15 15 H 1.48498 * 109.47295 * 60.00184 * 12 10 8 16 16 C 1.54921 * 101.57850 * 35.50266 * 5 4 2 17 17 N 1.47021 * 109.88419 * 238.90452 * 2 1 3 18 18 C 1.34775 * 125.64912 * 59.56572 * 17 2 1 19 19 O 1.21514 * 120.00089 * 0.02562 * 18 17 2 20 20 C 1.48169 * 120.00062 * 180.02562 * 18 17 2 21 21 C 1.39220 * 119.68431 * 179.72529 * 20 18 17 22 22 C 1.38713 * 119.18678 * 179.75111 * 21 20 18 23 23 C 1.38400 * 118.55550 * 0.51849 * 22 21 20 24 24 C 1.39255 * 119.30300 * 359.74815 * 23 22 21 25 25 N 1.39834 * 119.62064 * 180.02562 * 24 23 22 26 26 C 1.37177 * 126.48303 * 179.97438 * 25 24 23 27 27 C 1.34620 * 106.82476 * 180.02562 * 26 25 24 28 28 N 1.34152 * 108.21631 * 359.97438 * 27 26 25 29 29 C 1.30477 * 109.37659 * 359.73026 * 28 27 26 30 30 N 1.31975 * 120.76256 * 359.97438 * 24 23 22 31 31 H 1.08997 * 109.47378 * 298.90219 * 1 2 3 32 32 H 1.08995 * 109.47223 * 58.90695 * 1 2 3 33 33 H 1.08998 * 109.47207 * 178.90403 * 1 2 3 34 34 H 1.09000 * 110.72212 * 338.86286 * 4 2 1 35 35 H 1.09003 * 110.72394 * 215.58871 * 4 2 1 36 36 H 0.96999 * 119.99980 * 335.01039 * 7 5 4 37 37 H 0.97000 * 120.00284 * 359.97438 * 11 10 8 38 38 H 1.08995 * 110.36206 * 81.83155 * 16 5 4 39 39 H 1.09000 * 110.36339 * 204.15530 * 16 5 4 40 40 H 1.08005 * 120.40831 * 0.02562 * 21 20 18 41 41 H 1.08007 * 120.72718 * 180.24340 * 22 21 20 42 42 H 1.08008 * 120.34978 * 179.77226 * 23 22 21 43 43 H 1.08001 * 126.59095 * 359.96328 * 26 25 24 44 44 H 1.07996 * 125.89106 * 180.02562 * 27 26 25 45 45 H 1.08001 * 125.72767 * 180.27220 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 2.3518 -2.1695 0.6924 6 1 1.4453 -2.7739 0.6610 7 7 3.3937 -2.8313 1.4816 8 6 3.4568 -4.1985 1.5228 9 1 2.7388 -4.7890 0.9732 10 6 4.4437 -4.8255 2.2710 11 7 5.3191 -4.1058 2.9404 12 14 4.5302 -6.6907 2.3266 13 1 5.6647 -7.1080 3.1891 14 1 3.2625 -7.2287 2.8823 15 1 4.7318 -7.2180 0.9531 16 6 2.8568 -1.8498 -0.7368 17 7 2.0300 -0.7140 -1.1839 18 6 1.7754 -0.3844 -2.4657 19 8 1.0781 0.5781 -2.7185 20 6 2.3459 -1.1956 -3.5666 21 6 2.0741 -0.8525 -4.8882 22 6 2.6177 -1.6159 -5.9108 23 6 3.4062 -2.7034 -5.5771 24 6 3.6334 -2.9941 -4.2344 25 7 4.4295 -4.0908 -3.8898 26 6 4.7442 -4.5033 -2.6199 27 6 5.5278 -5.5906 -2.7464 28 7 5.6902 -5.8406 -4.0543 29 6 5.0328 -4.9536 -4.7495 30 7 3.1070 -2.2458 -3.2832 31 1 -0.3634 0.4967 0.8996 32 1 -0.3633 0.5307 -0.8800 33 1 -0.3633 -1.0274 -0.0197 34 1 1.2918 -0.7890 2.0201 35 1 2.9656 -0.2831 1.6182 36 1 4.0388 -2.3009 1.9751 37 1 5.2749 -3.1373 2.9106 38 1 3.9091 -1.5668 -0.7128 39 1 2.7087 -2.7081 -1.3922 40 1 1.4511 0.0003 -5.1145 41 1 2.4263 -1.3699 -6.9449 42 1 3.8411 -3.3198 -6.3501 43 1 4.4256 -4.0435 -1.6961 44 1 5.9517 -6.1634 -1.9349 45 1 4.9796 -4.9101 -5.8274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989067707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:08 Heat of formation + Delta-G solvation = 107.214125 kcal Electronic energy + Delta-G solvation = -30234.433394 eV Core-core repulsion = 26254.462954 eV Total energy + Delta-G solvation = -3979.970440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.36422 -40.81589 -39.48856 -37.55375 -34.55578 -34.31034 -33.42709 -31.55425 -31.29722 -30.27362 -29.29741 -28.15345 -25.68264 -25.17319 -24.26940 -23.64472 -22.43177 -21.15681 -20.98755 -20.35684 -19.48498 -18.28258 -17.56142 -17.44807 -16.53589 -16.15751 -16.00614 -15.75153 -15.42783 -14.67787 -14.46220 -14.30439 -13.87237 -13.74984 -13.69447 -13.63812 -13.41010 -13.30494 -13.11399 -13.02320 -12.50211 -12.43585 -12.05738 -11.92648 -11.23832 -11.02817 -10.90092 -10.74303 -10.65152 -10.39041 -10.32162 -10.17228 -10.10643 -10.02334 -9.68747 -9.25588 -8.99142 -8.96580 -8.51708 -8.41080 -7.16998 -6.18302 -3.21195 0.19564 0.60714 2.05029 2.28199 2.72320 2.89897 3.19277 3.49956 3.51305 3.59491 3.69304 3.79411 4.18990 4.37749 4.48972 4.58510 4.61350 4.73886 4.83042 4.97807 5.08253 5.13119 5.19605 5.31604 5.37488 5.54057 5.57903 5.62983 5.70868 5.76564 5.79480 5.83476 5.93419 6.01128 6.08876 6.12684 6.16163 6.21959 6.35161 6.48734 6.61413 6.75440 6.79236 7.02573 7.38116 7.59608 7.72693 7.98438 8.10075 8.66445 9.09831 9.96717 10.10404 11.29041 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007859 B = 0.005584 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.155780 B = 5013.345742 C = 8274.005258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 H 0.073 0.927 4 C -0.141 4.141 5 C 0.175 3.825 6 H 0.067 0.933 7 N -0.721 5.721 8 C -0.339 4.339 9 H 0.066 0.934 10 C -0.035 4.035 11 N -0.938 5.938 12 Si 1.073 2.927 13 H -0.285 1.285 14 H -0.295 1.295 15 H -0.291 1.291 16 C 0.077 3.923 17 N -0.584 5.584 18 C 0.579 3.421 19 O -0.541 6.541 20 C 0.123 3.877 21 C -0.128 4.128 22 C -0.052 4.052 23 C -0.165 4.165 24 C 0.350 3.650 25 N -0.416 5.416 26 C -0.011 4.011 27 C -0.027 4.027 28 N -0.475 5.475 29 C 0.180 3.820 30 N -0.461 5.461 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.370 0.630 37 H 0.256 0.744 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.193 0.807 44 H 0.180 0.820 45 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 6.235 -16.894 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.034 3.966 3 H 0.091 0.909 4 C -0.180 4.180 5 C 0.063 3.937 6 H 0.085 0.915 7 N -0.362 5.362 8 C -0.469 4.469 9 H 0.084 0.916 10 C -0.234 4.234 11 N -0.582 5.582 12 Si 0.903 3.097 13 H -0.210 1.210 14 H -0.223 1.223 15 H -0.218 1.218 16 C -0.049 4.049 17 N -0.315 5.315 18 C 0.366 3.634 19 O -0.419 6.419 20 C -0.017 4.017 21 C -0.150 4.150 22 C -0.078 4.078 23 C -0.187 4.187 24 C 0.120 3.880 25 N -0.099 5.099 26 C -0.139 4.139 27 C -0.171 4.171 28 N -0.192 5.192 29 C -0.101 4.101 30 N -0.176 5.176 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.204 0.796 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.165 0.835 43 H 0.210 0.790 44 H 0.197 0.803 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.305 4.478 -15.927 17.374 hybrid contribution -1.167 2.241 -1.004 2.719 sum -6.472 6.719 -16.931 19.331 Atomic orbital electron populations 1.22131 0.94702 1.02458 1.02603 1.21588 0.94628 0.95971 0.84429 0.90895 1.23066 1.01652 0.97439 0.95795 1.21301 0.92677 0.90890 0.88850 0.91533 1.42299 1.33603 1.04239 1.56105 1.20006 1.14891 0.82473 1.29545 0.91639 1.25716 0.94399 1.06655 0.96621 1.70898 1.37265 1.06493 1.43580 0.83341 0.75866 0.74259 0.76189 1.20998 1.22281 1.21765 1.23823 0.94161 0.87934 0.98964 1.48479 1.48624 1.30425 1.04022 1.17407 0.80921 0.83788 0.81333 1.90755 1.39462 1.28374 1.83297 1.20999 0.94997 0.92013 0.93663 1.22130 1.00076 1.01195 0.91607 1.21486 0.93439 0.92420 1.00496 1.21767 1.01949 1.00219 0.94800 1.18260 0.92044 0.88201 0.89502 1.43168 1.37336 1.20912 1.08531 1.23365 1.02905 0.99617 0.88024 1.22501 1.02614 0.98365 0.93597 1.70309 1.20518 1.23767 1.04613 1.25226 0.97880 0.89330 0.97708 1.67358 1.09502 1.05215 1.35493 0.91698 0.91375 0.92370 0.90049 0.90756 0.79649 0.93313 0.91699 0.88570 0.82702 0.82939 0.83500 0.78962 0.80286 0.77513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.05 37.15 0.34 -1.79 16 2 C 0.14 1.99 3.49 -66.96 -0.23 1.76 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.16 6.14 -24.90 -0.15 -2.31 16 5 C 0.18 3.25 3.71 -65.77 -0.24 3.01 16 6 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 7 N -0.72 -16.46 5.24 -51.34 -0.27 -16.73 16 8 C -0.34 -8.73 9.96 -15.06 -0.15 -8.88 16 9 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 10 C -0.04 -0.96 5.50 -17.43 -0.10 -1.06 16 11 N -0.94 -27.43 13.70 55.49 0.76 -26.67 16 12 Si 1.07 24.70 29.92 -169.99 -5.09 19.61 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.30 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.08 1.33 5.57 -2.52 -0.01 1.31 16 17 N -0.58 -9.27 3.08 -164.00 -0.51 -9.77 16 18 C 0.58 9.11 7.62 -12.18 -0.09 9.02 16 19 O -0.54 -9.13 15.23 5.35 0.08 -9.05 16 20 C 0.12 1.69 6.72 -83.02 -0.56 1.13 16 21 C -0.13 -1.33 9.63 -39.04 -0.38 -1.70 16 22 C -0.05 -0.39 10.16 -39.35 -0.40 -0.79 16 23 C -0.16 -1.43 9.50 -39.14 -0.37 -1.80 16 24 C 0.35 4.47 7.51 -154.52 -1.16 3.31 16 25 N -0.42 -5.79 2.98 -63.81 -0.19 -5.98 16 26 C -0.01 -0.18 11.17 -16.44 -0.18 -0.36 16 27 C -0.03 -0.45 11.85 -17.82 -0.21 -0.66 16 28 N -0.48 -7.41 11.24 -14.47 -0.16 -7.57 16 29 C 0.18 2.24 11.90 -89.58 -1.07 1.17 16 30 N -0.46 -6.70 6.12 -8.85 -0.05 -6.75 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.96 6.77 -51.93 -0.35 0.61 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.17 7.83 -51.93 -0.41 0.77 16 35 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 36 H 0.37 8.78 6.60 -40.82 -0.27 8.51 16 37 H 0.26 7.35 6.77 -40.82 -0.28 7.07 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.10 1.74 5.13 -51.93 -0.27 1.48 16 40 H 0.16 1.42 7.63 -52.48 -0.40 1.02 16 41 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 42 H 0.15 0.79 6.75 -52.48 -0.35 0.43 16 43 H 0.19 3.51 7.24 -52.49 -0.38 3.13 16 44 H 0.18 2.86 8.06 -52.49 -0.42 2.44 16 45 H 0.21 1.54 7.03 -52.49 -0.37 1.17 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -32.20 372.66 -10.44 -42.64 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -5.65 Total: 13.31 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -4.97 Total: 1.34 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -0.42 Total: -73.47 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.09 Total: 19.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.20 -10.44 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989067707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.854 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds