Wall clock time and date at job start Sat Apr 11 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.99779 * 2 1 4 4 C 1.54321 * 109.88457 * 121.09511 * 2 1 3 5 5 C 1.55160 * 102.94600 * 97.22393 * 4 2 1 6 6 H 1.08999 * 111.00783 * 277.39652 * 5 4 2 7 7 N 1.46499 * 111.00961 * 153.57432 * 5 4 2 8 8 C 1.36935 * 119.99942 * 154.99970 * 7 5 4 9 9 H 1.07999 * 120.00083 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99632 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00227 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99548 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46845 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47399 * 299.99577 * 12 10 8 15 15 H 1.48498 * 109.47295 * 60.00184 * 12 10 8 16 16 C 1.54921 * 101.57850 * 35.50266 * 5 4 2 17 17 N 1.47021 * 109.88419 * 238.90452 * 2 1 3 18 18 C 1.34775 * 125.64912 * 59.56572 * 17 2 1 19 19 O 1.21514 * 120.00089 * 0.02562 * 18 17 2 20 20 C 1.48169 * 120.00062 * 180.02562 * 18 17 2 21 21 C 1.39220 * 119.68431 * 179.72529 * 20 18 17 22 22 C 1.38713 * 119.18678 * 179.75111 * 21 20 18 23 23 C 1.38400 * 118.55550 * 0.51849 * 22 21 20 24 24 C 1.39255 * 119.30300 * 359.74815 * 23 22 21 25 25 N 1.39834 * 119.62064 * 180.02562 * 24 23 22 26 26 C 1.37177 * 126.48303 * 179.97438 * 25 24 23 27 27 C 1.34620 * 106.82476 * 180.02562 * 26 25 24 28 28 N 1.34152 * 108.21631 * 359.97438 * 27 26 25 29 29 C 1.30477 * 109.37659 * 359.73026 * 28 27 26 30 30 N 1.31975 * 120.76256 * 359.97438 * 24 23 22 31 31 H 1.08997 * 109.47378 * 298.90219 * 1 2 3 32 32 H 1.08995 * 109.47223 * 58.90695 * 1 2 3 33 33 H 1.08998 * 109.47207 * 178.90403 * 1 2 3 34 34 H 1.09000 * 110.72212 * 338.86286 * 4 2 1 35 35 H 1.09003 * 110.72394 * 215.58871 * 4 2 1 36 36 H 0.96999 * 119.99980 * 335.01039 * 7 5 4 37 37 H 0.97000 * 120.00284 * 359.97438 * 11 10 8 38 38 H 1.08995 * 110.36206 * 81.83155 * 16 5 4 39 39 H 1.09000 * 110.36339 * 204.15530 * 16 5 4 40 40 H 1.08005 * 120.40831 * 0.02562 * 21 20 18 41 41 H 1.08007 * 120.72718 * 180.24340 * 22 21 20 42 42 H 1.08008 * 120.34978 * 179.77226 * 23 22 21 43 43 H 1.08001 * 126.59095 * 359.96328 * 26 25 24 44 44 H 1.07996 * 125.89106 * 180.02562 * 27 26 25 45 45 H 1.08001 * 125.72767 * 180.27220 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 2.3518 -2.1695 0.6924 6 1 1.4453 -2.7739 0.6610 7 7 3.3937 -2.8313 1.4816 8 6 3.4568 -4.1985 1.5228 9 1 2.7388 -4.7890 0.9732 10 6 4.4437 -4.8255 2.2710 11 7 5.3191 -4.1058 2.9404 12 14 4.5302 -6.6907 2.3266 13 1 5.6647 -7.1080 3.1891 14 1 3.2625 -7.2287 2.8823 15 1 4.7318 -7.2180 0.9531 16 6 2.8568 -1.8498 -0.7368 17 7 2.0300 -0.7140 -1.1839 18 6 1.7754 -0.3844 -2.4657 19 8 1.0781 0.5781 -2.7185 20 6 2.3459 -1.1956 -3.5666 21 6 2.0741 -0.8525 -4.8882 22 6 2.6177 -1.6159 -5.9108 23 6 3.4062 -2.7034 -5.5771 24 6 3.6334 -2.9941 -4.2344 25 7 4.4295 -4.0908 -3.8898 26 6 4.7442 -4.5033 -2.6199 27 6 5.5278 -5.5906 -2.7464 28 7 5.6902 -5.8406 -4.0543 29 6 5.0328 -4.9536 -4.7495 30 7 3.1070 -2.2458 -3.2832 31 1 -0.3634 0.4967 0.8996 32 1 -0.3633 0.5307 -0.8800 33 1 -0.3633 -1.0274 -0.0197 34 1 1.2918 -0.7890 2.0201 35 1 2.9656 -0.2831 1.6182 36 1 4.0388 -2.3009 1.9751 37 1 5.2749 -3.1373 2.9106 38 1 3.9091 -1.5668 -0.7128 39 1 2.7087 -2.7081 -1.3922 40 1 1.4511 0.0003 -5.1145 41 1 2.4263 -1.3699 -6.9449 42 1 3.8411 -3.3198 -6.3501 43 1 4.4256 -4.0435 -1.6961 44 1 5.9517 -6.1634 -1.9349 45 1 4.9796 -4.9101 -5.8274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989067707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:07 Heat of formation + Delta-G solvation = 89.156947 kcal Electronic energy + Delta-G solvation = -30235.216412 eV Core-core repulsion = 26254.462954 eV Total energy + Delta-G solvation = -3980.753458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.41804 -41.89146 -40.60745 -38.89595 -36.35421 -35.32005 -34.32953 -33.21484 -32.57034 -31.25847 -30.40319 -29.80821 -26.93002 -26.26817 -25.53002 -25.19630 -23.61401 -22.36746 -22.15745 -21.62734 -20.61618 -19.52717 -19.36053 -18.62243 -17.37589 -17.22021 -17.12002 -16.95270 -16.66587 -16.20073 -15.95019 -15.55917 -15.30972 -15.00691 -14.84179 -14.70421 -14.59949 -14.53512 -14.38621 -14.25144 -13.89867 -13.34120 -13.25945 -13.17151 -12.77224 -12.69172 -12.34263 -12.22639 -11.88977 -11.88380 -11.71636 -11.47896 -11.26509 -11.22336 -11.13007 -11.05510 -10.55633 -10.00126 -9.79325 -9.55008 -9.13689 -8.35214 -5.31762 -0.66384 -0.22349 1.05846 1.32271 1.59906 1.60815 1.68421 1.73943 1.84629 2.03198 2.66077 2.69592 2.78574 3.31392 3.39954 3.44087 3.60988 3.67051 3.76611 3.82450 3.84143 3.90612 3.98020 4.16677 4.24979 4.33229 4.35830 4.36366 4.43800 4.58320 4.62741 4.77909 4.81550 4.87622 4.89882 4.92220 5.01738 5.09133 5.14607 5.22623 5.29481 5.35690 5.58168 5.62367 6.03417 6.30309 6.47444 6.52617 6.86264 6.91863 7.08070 7.97486 8.09036 9.15884 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007859 B = 0.005584 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.155780 B = 5013.345742 C = 8274.005258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 H 0.080 0.920 4 C -0.128 4.128 5 C 0.169 3.831 6 H 0.057 0.943 7 N -0.731 5.731 8 C -0.326 4.326 9 H 0.063 0.937 10 C -0.089 4.089 11 N -0.972 5.972 12 Si 1.114 2.886 13 H -0.295 1.295 14 H -0.281 1.281 15 H -0.274 1.274 16 C 0.103 3.897 17 N -0.591 5.591 18 C 0.576 3.424 19 O -0.556 6.556 20 C 0.086 3.914 21 C -0.118 4.118 22 C -0.033 4.033 23 C -0.139 4.139 24 C 0.318 3.682 25 N -0.416 5.416 26 C -0.036 4.036 27 C -0.039 4.039 28 N -0.508 5.508 29 C 0.208 3.792 30 N -0.495 5.495 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.363 0.637 37 H 0.245 0.755 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.167 0.833 41 H 0.207 0.793 42 H 0.193 0.807 43 H 0.163 0.837 44 H 0.171 0.829 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 6.592 -20.891 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.032 3.968 3 H 0.098 0.902 4 C -0.167 4.167 5 C 0.058 3.942 6 H 0.075 0.925 7 N -0.372 5.372 8 C -0.457 4.457 9 H 0.081 0.919 10 C -0.281 4.281 11 N -0.620 5.620 12 Si 0.939 3.061 13 H -0.221 1.221 14 H -0.208 1.208 15 H -0.200 1.200 16 C -0.023 4.023 17 N -0.322 5.322 18 C 0.364 3.636 19 O -0.435 6.435 20 C -0.052 4.052 21 C -0.139 4.139 22 C -0.058 4.058 23 C -0.161 4.161 24 C 0.088 3.912 25 N -0.099 5.099 26 C -0.165 4.165 27 C -0.183 4.183 28 N -0.225 5.225 29 C -0.073 4.073 30 N -0.210 5.210 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.196 0.804 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.184 0.816 41 H 0.223 0.777 42 H 0.210 0.790 43 H 0.180 0.820 44 H 0.189 0.811 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -6.617 4.887 -19.955 21.584 hybrid contribution -0.856 2.237 0.050 2.396 sum -7.473 7.124 -19.905 22.424 Atomic orbital electron populations 1.22056 0.93327 1.02133 1.03405 1.21679 0.95666 0.95925 0.83495 0.90193 1.22965 1.02112 0.94981 0.96608 1.21416 0.91091 0.92328 0.89355 0.92450 1.42378 1.34512 1.03473 1.56816 1.20222 1.13798 0.83906 1.27759 0.91854 1.26870 0.94491 1.09835 0.96938 1.70994 1.39016 1.06030 1.45945 0.82810 0.75899 0.70567 0.76803 1.22119 1.20776 1.20007 1.23258 0.92977 0.88317 0.97744 1.48503 1.48745 1.30082 1.04835 1.17840 0.80450 0.83770 0.81553 1.90727 1.40194 1.29084 1.83534 1.20836 0.97163 0.92873 0.94351 1.22421 0.99322 1.01458 0.90715 1.22077 0.91149 0.90551 1.02035 1.22308 1.00198 1.00161 0.93450 1.18666 0.93191 0.88297 0.91063 1.43237 1.37545 1.21564 1.07540 1.22913 1.04503 1.00356 0.88756 1.22456 1.02868 0.98473 0.94463 1.70298 1.22573 1.25651 1.03963 1.26298 0.94669 0.86950 0.99420 1.67050 1.10373 1.06039 1.37540 0.89304 0.92164 0.93123 0.88605 0.90897 0.80393 0.94419 0.93950 0.89433 0.81587 0.77656 0.78998 0.81970 0.81150 0.71950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.05 71.98 0.65 -3.23 16 2 C 0.14 3.92 3.49 45.34 0.16 4.08 16 3 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.13 -3.98 6.14 31.78 0.20 -3.79 16 5 C 0.17 6.54 3.71 46.39 0.17 6.71 16 6 H 0.06 2.33 8.09 -2.39 -0.02 2.31 16 7 N -0.73 -35.01 5.24 -316.36 -1.66 -36.67 16 8 C -0.33 -17.45 9.96 84.03 0.84 -16.62 16 9 H 0.06 3.37 7.83 -2.91 -0.02 3.35 16 10 C -0.09 -4.99 5.50 84.86 0.47 -4.52 16 11 N -0.97 -59.14 13.70 21.65 0.30 -58.84 16 12 Si 1.11 51.18 29.92 68.60 2.05 53.23 16 13 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 16 C 0.10 3.78 5.57 86.86 0.48 4.26 16 17 N -0.59 -19.21 3.08 -791.06 -2.44 -21.64 16 18 C 0.58 18.19 7.62 86.88 0.66 18.86 16 19 O -0.56 -18.54 15.23 -3.76 -0.06 -18.59 16 20 C 0.09 2.31 6.72 41.88 0.28 2.59 16 21 C -0.12 -2.06 9.63 22.62 0.22 -1.84 16 22 C -0.03 -0.31 10.16 22.42 0.23 -0.08 16 23 C -0.14 -1.70 9.50 22.55 0.21 -1.49 16 24 C 0.32 7.52 7.51 132.93 1.00 8.51 16 25 N -0.42 -11.15 2.98 -355.80 -1.06 -12.22 16 26 C -0.04 -1.23 11.17 83.03 0.93 -0.31 16 27 C -0.04 -1.35 11.85 83.51 0.99 -0.36 16 28 N -0.51 -15.35 11.24 -199.68 -2.24 -17.60 16 29 C 0.21 4.57 11.90 179.99 2.14 6.71 16 30 N -0.50 -14.43 6.12 -181.91 -1.11 -15.54 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.66 6.77 -2.39 -0.02 1.64 16 33 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 2.70 7.83 -2.39 -0.02 2.68 16 35 H 0.07 2.30 8.00 -2.39 -0.02 2.28 16 36 H 0.36 18.24 6.60 -92.71 -0.61 17.63 16 37 H 0.25 14.83 6.77 -92.71 -0.63 14.20 16 38 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 3.41 5.13 -2.39 -0.01 3.40 16 40 H 0.17 2.51 7.63 -2.91 -0.02 2.49 16 41 H 0.21 -0.13 8.06 -2.91 -0.02 -0.16 16 42 H 0.19 0.56 6.75 -2.91 -0.02 0.54 16 43 H 0.16 6.57 7.24 -2.91 -0.02 6.54 16 44 H 0.17 5.87 8.06 -2.91 -0.02 5.85 16 45 H 0.26 2.29 7.03 -2.91 -0.02 2.27 16 Total: -1.00 -76.00 372.66 3.97 -72.03 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.57 Total: 36.34 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 9.62 Total: 19.50 kcal Atomic # 7 Polarization: -154.29 SS G_CDS: -8.22 Total: -162.51 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.06 Total: -18.59 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -76.00 3.97 -72.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989067707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.191 kcal (2) G-P(sol) polarization free energy of solvation -76.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds