Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99578 * 2 1 4 4 C 1.54326 * 109.88463 * 238.89860 * 2 1 3 5 5 C 1.55153 * 102.94211 * 218.39299 * 4 2 1 6 6 H 1.09000 * 111.00471 * 153.61792 * 5 4 2 7 7 N 1.46504 * 111.00129 * 277.42718 * 5 4 2 8 8 C 1.36943 * 119.99781 * 205.00317 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48496 * 109.47031 * 59.99836 * 12 10 8 14 14 H 1.48497 * 109.47267 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47169 * 300.00118 * 12 10 8 16 16 C 1.54906 * 101.58297 * 35.50209 * 5 4 2 17 17 N 1.47023 * 109.87964 * 121.09270 * 2 1 3 18 18 C 1.34777 * 125.65309 * 298.31322 * 17 2 1 19 19 O 1.21584 * 119.99506 * 0.02562 * 18 17 2 20 20 C 1.47690 * 120.00486 * 179.97438 * 18 17 2 21 21 C 1.41562 * 126.43997 * 179.97438 * 20 18 17 22 22 C 1.35325 * 105.55725 * 180.02562 * 21 20 18 23 23 N 1.35906 * 107.11472 * 0.02562 * 22 21 20 24 24 C 1.39918 * 124.95878 * 179.97438 * 23 22 21 25 25 C 1.39318 * 120.85869 * 359.71924 * 24 23 22 26 26 C 1.38019 * 119.07727 * 179.72944 * 25 24 23 27 27 N 1.31932 * 120.83303 * 0.55658 * 26 25 24 28 28 C 1.31926 * 121.88636 * 359.71332 * 27 26 25 29 29 C 1.38015 * 120.83412 * 0.02562 * 28 27 26 30 30 N 1.28472 * 110.07427 * 359.72413 * 23 22 21 31 31 H 1.09002 * 109.46729 * 181.09823 * 1 2 3 32 32 H 1.08997 * 109.47153 * 301.10044 * 1 2 3 33 33 H 1.08998 * 109.46547 * 61.10059 * 1 2 3 34 34 H 1.09003 * 110.71326 * 100.02479 * 4 2 1 35 35 H 1.09000 * 110.71754 * 336.76123 * 4 2 1 36 36 H 0.97000 * 120.00410 * 25.00642 * 7 5 4 37 37 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 38 38 H 1.09006 * 110.36600 * 81.83239 * 16 5 4 39 39 H 1.09005 * 110.36448 * 204.14668 * 16 5 4 40 40 H 1.08006 * 127.21926 * 0.02562 * 21 20 18 41 41 H 1.08008 * 126.43774 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.46326 * 359.97438 * 25 24 23 43 43 H 1.08003 * 119.58098 * 180.27513 * 26 25 24 44 44 H 1.08005 * 119.58215 * 180.02562 * 28 27 26 45 45 H 1.08004 * 120.46096 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 6 3.2876 -1.5143 -0.6922 6 1 3.4857 -2.4108 -1.2798 7 7 4.4674 -0.6468 -0.6492 8 6 5.7218 -1.1941 -0.6985 9 1 5.8413 -2.2652 -0.7686 10 6 6.8397 -0.3725 -0.6519 11 7 6.6941 0.9327 -0.5659 12 14 8.5508 -1.1195 -0.7113 13 1 8.7159 -1.8786 -1.9769 14 1 9.5658 -0.0374 -0.6477 15 1 8.7310 -2.0364 0.4429 16 6 2.8145 -1.8794 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8086 -0.3611 2.4658 19 8 1.1437 0.6249 2.7186 20 6 2.3728 -1.1727 3.5632 21 6 2.2272 -0.9288 4.9500 22 6 2.9083 -1.9222 5.5667 23 7 3.4308 -2.7133 4.5929 24 6 4.2076 -3.8551 4.8183 25 6 4.5124 -4.2677 6.1136 26 6 5.2769 -5.4027 6.2935 27 7 5.7258 -6.0867 5.2586 28 6 5.4633 -5.7250 4.0173 29 6 4.7013 -4.6051 3.7529 30 7 3.1028 -2.2627 3.4354 31 1 -0.3633 -1.0275 0.0197 32 1 -0.3633 0.5308 0.8799 33 1 -0.3632 0.4966 -0.8997 34 1 2.3530 -0.0461 -2.0200 35 1 1.3051 -1.4460 -1.6182 36 1 4.3601 0.3151 -0.5858 37 1 7.4753 1.5068 -0.5337 38 1 2.1886 -2.7715 0.7130 39 1 3.6716 -2.0338 1.3924 40 1 1.6861 -0.1195 5.4177 41 1 3.0164 -2.0604 6.6325 42 1 4.1522 -3.7095 6.9651 43 1 5.5143 -5.7325 7.2942 44 1 5.8496 -6.3128 3.1976 45 1 4.4904 -4.3142 2.7344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989171163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = 116.234170 kcal Electronic energy + Delta-G solvation = -29811.581522 eV Core-core repulsion = 25832.002221 eV Total energy + Delta-G solvation = -3979.579302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.01988 -40.28561 -39.59390 -37.25574 -34.56840 -33.96604 -32.05347 -31.69538 -31.29285 -30.73842 -30.00256 -28.41247 -25.54097 -25.13813 -24.16981 -23.72171 -22.85993 -21.36063 -21.09875 -19.95515 -19.01597 -18.43187 -17.30730 -16.79916 -16.38128 -16.30788 -16.13298 -15.91145 -15.23523 -14.73658 -14.57763 -14.10178 -14.08848 -13.82423 -13.76308 -13.65391 -13.40242 -13.18329 -12.93337 -12.65724 -12.19424 -12.07510 -11.88865 -11.59649 -11.17136 -11.12714 -10.90567 -10.88167 -10.68774 -10.43300 -10.30894 -10.01991 -9.96211 -9.75283 -9.71028 -9.57736 -9.38592 -9.01569 -8.82240 -8.18570 -7.01951 -5.81178 -3.11076 0.38751 0.75325 1.85977 2.09214 2.14794 3.31319 3.39533 3.44002 3.45655 3.48319 3.65903 4.03629 4.11518 4.35582 4.53372 4.56298 4.63669 4.76290 4.93511 5.09342 5.18732 5.25599 5.35017 5.35322 5.43942 5.50957 5.56165 5.62315 5.63000 5.70319 5.74747 5.86440 5.92268 6.05427 6.18897 6.23189 6.27175 6.35413 6.43968 6.50354 6.65214 6.68709 6.73498 6.95742 7.60883 7.63908 7.72681 7.93520 8.36129 8.49200 9.47715 10.03705 10.38351 11.40880 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007312 B = 0.004931 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.307054 B = 5677.457396 C = 8332.379275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.076 0.924 4 C -0.139 4.139 5 C 0.167 3.833 6 H 0.074 0.926 7 N -0.711 5.711 8 C -0.244 4.244 9 H 0.071 0.929 10 C -0.009 4.009 11 N -0.929 5.929 12 Si 0.905 3.095 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.287 1.287 16 C 0.071 3.929 17 N -0.582 5.582 18 C 0.614 3.386 19 O -0.543 6.543 20 C 0.016 3.984 21 C -0.166 4.166 22 C -0.019 4.019 23 N -0.247 5.247 24 C 0.191 3.809 25 C -0.188 4.188 26 C 0.122 3.878 27 N -0.490 5.490 28 C 0.125 3.875 29 C -0.161 4.161 30 N -0.240 5.240 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.169 0.831 41 H 0.185 0.815 42 H 0.144 0.856 43 H 0.166 0.834 44 H 0.169 0.831 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.542 -10.948 11.507 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 H 0.094 0.906 4 C -0.178 4.178 5 C 0.054 3.946 6 H 0.092 0.908 7 N -0.350 5.350 8 C -0.375 4.375 9 H 0.089 0.911 10 C -0.205 4.205 11 N -0.576 5.576 12 Si 0.736 3.264 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.055 4.055 17 N -0.314 5.314 18 C 0.400 3.600 19 O -0.420 6.420 20 C -0.147 4.147 21 C -0.193 4.193 22 C -0.157 4.157 23 N -0.029 5.029 24 C 0.091 3.909 25 C -0.211 4.211 26 C -0.035 4.035 27 N -0.199 5.199 28 C -0.031 4.031 29 C -0.183 4.183 30 N -0.072 5.072 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.187 0.813 41 H 0.202 0.798 42 H 0.162 0.838 43 H 0.183 0.817 44 H 0.186 0.814 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.723 -11.973 11.037 18.473 hybrid contribution 0.208 1.344 0.635 1.501 sum -8.515 -10.628 11.672 17.936 Atomic orbital electron populations 1.22137 0.95290 1.01812 1.02517 1.21536 0.93642 0.96790 0.84489 0.90553 1.23099 0.98374 1.00057 0.96305 1.21374 0.86991 0.94370 0.91850 0.90821 1.42319 1.00061 1.05470 1.87188 1.19169 0.83199 0.91926 1.43234 0.91084 1.24743 0.97821 0.95344 1.02607 1.69650 1.29093 1.02139 1.56733 0.86313 0.84469 0.77810 0.77842 1.21113 1.21709 1.21334 1.23575 0.95109 0.86230 1.00566 1.48225 1.50608 1.28530 1.04003 1.16394 0.80005 0.83221 0.80379 1.90752 1.41179 1.26825 1.83263 1.22172 1.02080 0.95444 0.94965 1.21854 1.04346 1.01209 0.91936 1.23015 1.01892 0.94386 0.96416 1.42781 1.36669 1.19317 1.04125 1.17914 0.92549 0.85410 0.95008 1.21874 1.03471 1.00532 0.95206 1.22663 0.92139 0.90069 0.98628 1.67711 1.20979 1.31630 0.99627 1.22820 0.92775 0.93161 0.94364 1.22139 0.99414 0.96193 1.00536 1.73834 1.14582 1.12575 1.06196 0.92856 0.91533 0.91876 0.89703 0.90761 0.78045 0.93378 0.92937 0.88570 0.81312 0.79762 0.83804 0.81675 0.81377 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.10 37.16 0.34 -1.92 16 2 C 0.14 2.31 3.45 -66.95 -0.23 2.08 16 3 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.14 -2.18 6.08 -24.90 -0.15 -2.33 16 5 C 0.17 3.12 3.72 -65.78 -0.24 2.87 16 6 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 7 N -0.71 -17.13 5.23 -51.35 -0.27 -17.40 16 8 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 11 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 12 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 C 0.07 1.27 5.84 -2.53 -0.01 1.25 16 17 N -0.58 -10.62 3.06 -164.17 -0.50 -11.12 16 18 C 0.61 11.78 7.65 -12.40 -0.09 11.69 16 19 O -0.54 -11.28 15.97 5.29 0.08 -11.20 16 20 C 0.02 0.28 6.96 -82.75 -0.58 -0.29 16 21 C -0.17 -2.31 10.80 -39.35 -0.42 -2.74 16 22 C -0.02 -0.22 10.82 -16.79 -0.18 -0.40 16 23 N -0.25 -3.42 3.51 -10.37 -0.04 -3.45 16 24 C 0.19 2.31 6.70 -83.36 -0.56 1.75 16 25 C -0.19 -1.68 9.50 -39.26 -0.37 -2.05 16 26 C 0.12 1.06 11.17 -17.59 -0.20 0.87 16 27 N -0.49 -5.34 10.36 -13.32 -0.14 -5.47 16 28 C 0.13 1.34 11.17 -17.59 -0.20 1.14 16 29 C -0.16 -1.95 9.67 -39.26 -0.38 -2.33 16 30 N -0.24 -3.98 8.36 33.43 0.28 -3.70 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.05 6.90 -51.93 -0.36 0.69 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 0.96 7.85 -51.93 -0.41 0.56 16 36 H 0.39 10.19 7.86 -40.82 -0.32 9.87 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.10 1.94 6.20 -51.93 -0.32 1.61 16 40 H 0.17 2.03 8.06 -52.48 -0.42 1.61 16 41 H 0.19 1.26 7.04 -52.48 -0.37 0.89 16 42 H 0.14 0.84 6.78 -52.48 -0.36 0.49 16 43 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.16 2.01 7.74 -52.48 -0.41 1.60 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -34.12 378.03 -8.61 -42.73 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.89 Total: 11.45 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -3.53 Total: 2.58 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: 0.06 Total: -68.31 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.12 -8.61 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989171163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.963 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds