Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99578 * 2 1 4 4 C 1.54326 * 109.88463 * 238.89860 * 2 1 3 5 5 C 1.55153 * 102.94211 * 218.39299 * 4 2 1 6 6 H 1.09000 * 111.00471 * 153.61792 * 5 4 2 7 7 N 1.46504 * 111.00129 * 277.42718 * 5 4 2 8 8 C 1.36943 * 119.99781 * 205.00317 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48496 * 109.47031 * 59.99836 * 12 10 8 14 14 H 1.48497 * 109.47267 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47169 * 300.00118 * 12 10 8 16 16 C 1.54906 * 101.58297 * 35.50209 * 5 4 2 17 17 N 1.47023 * 109.87964 * 121.09270 * 2 1 3 18 18 C 1.34777 * 125.65309 * 298.31322 * 17 2 1 19 19 O 1.21584 * 119.99506 * 0.02562 * 18 17 2 20 20 C 1.47690 * 120.00486 * 179.97438 * 18 17 2 21 21 C 1.41562 * 126.43997 * 179.97438 * 20 18 17 22 22 C 1.35325 * 105.55725 * 180.02562 * 21 20 18 23 23 N 1.35906 * 107.11472 * 0.02562 * 22 21 20 24 24 C 1.39918 * 124.95878 * 179.97438 * 23 22 21 25 25 C 1.39318 * 120.85869 * 359.71924 * 24 23 22 26 26 C 1.38019 * 119.07727 * 179.72944 * 25 24 23 27 27 N 1.31932 * 120.83303 * 0.55658 * 26 25 24 28 28 C 1.31926 * 121.88636 * 359.71332 * 27 26 25 29 29 C 1.38015 * 120.83412 * 0.02562 * 28 27 26 30 30 N 1.28472 * 110.07427 * 359.72413 * 23 22 21 31 31 H 1.09002 * 109.46729 * 181.09823 * 1 2 3 32 32 H 1.08997 * 109.47153 * 301.10044 * 1 2 3 33 33 H 1.08998 * 109.46547 * 61.10059 * 1 2 3 34 34 H 1.09003 * 110.71326 * 100.02479 * 4 2 1 35 35 H 1.09000 * 110.71754 * 336.76123 * 4 2 1 36 36 H 0.97000 * 120.00410 * 25.00642 * 7 5 4 37 37 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 38 38 H 1.09006 * 110.36600 * 81.83239 * 16 5 4 39 39 H 1.09005 * 110.36448 * 204.14668 * 16 5 4 40 40 H 1.08006 * 127.21926 * 0.02562 * 21 20 18 41 41 H 1.08008 * 126.43774 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.46326 * 359.97438 * 25 24 23 43 43 H 1.08003 * 119.58098 * 180.27513 * 26 25 24 44 44 H 1.08005 * 119.58215 * 180.02562 * 28 27 26 45 45 H 1.08004 * 120.46096 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 6 3.2876 -1.5143 -0.6922 6 1 3.4857 -2.4108 -1.2798 7 7 4.4674 -0.6468 -0.6492 8 6 5.7218 -1.1941 -0.6985 9 1 5.8413 -2.2652 -0.7686 10 6 6.8397 -0.3725 -0.6519 11 7 6.6941 0.9327 -0.5659 12 14 8.5508 -1.1195 -0.7113 13 1 8.7159 -1.8786 -1.9769 14 1 9.5658 -0.0374 -0.6477 15 1 8.7310 -2.0364 0.4429 16 6 2.8145 -1.8794 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8086 -0.3611 2.4658 19 8 1.1437 0.6249 2.7186 20 6 2.3728 -1.1727 3.5632 21 6 2.2272 -0.9288 4.9500 22 6 2.9083 -1.9222 5.5667 23 7 3.4308 -2.7133 4.5929 24 6 4.2076 -3.8551 4.8183 25 6 4.5124 -4.2677 6.1136 26 6 5.2769 -5.4027 6.2935 27 7 5.7258 -6.0867 5.2586 28 6 5.4633 -5.7250 4.0173 29 6 4.7013 -4.6051 3.7529 30 7 3.1028 -2.2627 3.4354 31 1 -0.3633 -1.0275 0.0197 32 1 -0.3633 0.5308 0.8799 33 1 -0.3632 0.4966 -0.8997 34 1 2.3530 -0.0461 -2.0200 35 1 1.3051 -1.4460 -1.6182 36 1 4.3601 0.3151 -0.5858 37 1 7.4753 1.5068 -0.5337 38 1 2.1886 -2.7715 0.7130 39 1 3.6716 -2.0338 1.3924 40 1 1.6861 -0.1195 5.4177 41 1 3.0164 -2.0604 6.6325 42 1 4.1522 -3.7095 6.9651 43 1 5.5143 -5.7325 7.2942 44 1 5.8496 -6.3128 3.1976 45 1 4.4904 -4.3142 2.7344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989171163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = 93.788801 kcal Electronic energy + Delta-G solvation = -29812.554826 eV Core-core repulsion = 25832.002221 eV Total energy + Delta-G solvation = -3980.552606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.06814 -41.24081 -40.86108 -38.75393 -35.82341 -35.52762 -33.31379 -33.00550 -32.64834 -31.70392 -31.04201 -30.14131 -26.85333 -26.30367 -25.68264 -24.98850 -23.95452 -22.42095 -22.26640 -21.39036 -20.17003 -19.52757 -19.28412 -18.10676 -17.60525 -17.30943 -17.11504 -16.89590 -16.46474 -16.31064 -15.86258 -15.48121 -15.38652 -14.95382 -14.82590 -14.80403 -14.71894 -14.51560 -14.25462 -14.03269 -13.53453 -13.27030 -13.16606 -12.87452 -12.83691 -12.71238 -12.39725 -12.28768 -12.19068 -11.90080 -11.76238 -11.64106 -11.51112 -11.24413 -10.96826 -10.71692 -10.42397 -10.31130 -9.89910 -9.62493 -8.99426 -7.94743 -5.23360 -0.51270 0.00712 0.64026 1.13167 1.21393 1.44362 1.46840 1.52595 1.98712 2.27860 2.54119 2.72511 3.04593 3.36422 3.44850 3.48822 3.57777 3.77744 3.83818 3.88385 3.93034 3.99790 4.05999 4.11336 4.36471 4.41313 4.45589 4.48331 4.58575 4.62809 4.69063 4.75099 4.76008 4.81519 4.90431 4.98860 5.10260 5.15595 5.21644 5.22836 5.34115 5.45565 5.52079 5.53596 5.81373 6.25853 6.46193 6.64253 6.85658 7.07243 7.32339 8.07192 8.30017 9.28673 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007312 B = 0.004931 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.307054 B = 5677.457396 C = 8332.379275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.132 3.868 3 H 0.046 0.954 4 C -0.122 4.122 5 C 0.156 3.844 6 H 0.089 0.911 7 N -0.724 5.724 8 C -0.233 4.233 9 H 0.083 0.917 10 C -0.075 4.075 11 N -0.972 5.972 12 Si 0.967 3.033 13 H -0.272 1.272 14 H -0.302 1.302 15 H -0.281 1.281 16 C 0.086 3.914 17 N -0.587 5.587 18 C 0.603 3.397 19 O -0.571 6.571 20 C -0.021 4.021 21 C -0.185 4.185 22 C 0.005 3.995 23 N -0.247 5.247 24 C 0.161 3.839 25 C -0.172 4.172 26 C 0.125 3.875 27 N -0.506 5.506 28 C 0.121 3.879 29 C -0.181 4.181 30 N -0.264 5.264 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.370 0.630 37 H 0.248 0.752 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.181 0.819 41 H 0.239 0.761 42 H 0.183 0.817 43 H 0.205 0.795 44 H 0.184 0.816 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.891 -13.518 13.265 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.029 3.971 3 H 0.065 0.935 4 C -0.161 4.161 5 C 0.046 3.954 6 H 0.107 0.893 7 N -0.362 5.362 8 C -0.365 4.365 9 H 0.101 0.899 10 C -0.267 4.267 11 N -0.622 5.622 12 Si 0.796 3.204 13 H -0.198 1.198 14 H -0.228 1.228 15 H -0.208 1.208 16 C -0.040 4.040 17 N -0.318 5.318 18 C 0.391 3.609 19 O -0.451 6.451 20 C -0.182 4.182 21 C -0.212 4.212 22 C -0.133 4.133 23 N -0.029 5.029 24 C 0.063 3.937 25 C -0.194 4.194 26 C -0.032 4.032 27 N -0.216 5.216 28 C -0.035 4.035 29 C -0.203 4.203 30 N -0.097 5.097 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.201 0.799 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.198 0.802 41 H 0.255 0.745 42 H 0.200 0.800 43 H 0.222 0.778 44 H 0.201 0.799 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.104 -14.615 12.767 21.435 hybrid contribution 0.292 2.014 0.189 2.044 sum -8.812 -12.601 12.956 20.107 Atomic orbital electron populations 1.22027 0.92945 1.02703 1.02781 1.21653 0.95476 0.95375 0.84610 0.93532 1.23026 0.97536 1.00100 0.95442 1.21678 0.86439 0.94520 0.92796 0.89344 1.42502 1.01075 1.05271 1.87334 1.19614 0.84256 0.92410 1.40212 0.89916 1.25515 1.01493 0.95721 1.04011 1.69826 1.29328 1.03515 1.59563 0.85307 0.80030 0.76731 0.78303 1.19754 1.22820 1.20790 1.23341 0.94751 0.86991 0.98916 1.48360 1.50478 1.28641 1.04298 1.16818 0.79767 0.83220 0.81094 1.90709 1.42539 1.28029 1.83796 1.22136 1.03849 0.96438 0.95805 1.22126 1.05630 1.02710 0.90700 1.23765 0.99188 0.92260 0.98127 1.43028 1.36276 1.19708 1.03926 1.18329 0.93523 0.85363 0.96502 1.22298 1.02015 1.00286 0.94765 1.23372 0.90802 0.89366 0.99651 1.67778 1.21463 1.32335 1.00022 1.23034 0.92479 0.92840 0.95131 1.22124 1.00744 0.97322 1.00067 1.73740 1.15148 1.12777 1.08067 0.91433 0.93550 0.89401 0.90127 0.86903 0.79904 0.94325 0.90437 0.91038 0.80168 0.74497 0.80009 0.77801 0.79915 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.10 71.98 0.65 -3.38 16 2 C 0.13 4.45 3.45 45.34 0.16 4.60 16 3 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 4 C -0.12 -3.69 6.08 31.78 0.19 -3.50 16 5 C 0.16 5.78 3.72 46.38 0.17 5.95 16 6 H 0.09 3.03 8.09 -2.39 -0.02 3.01 16 7 N -0.72 -35.63 5.23 -316.37 -1.66 -37.29 16 8 C -0.23 -12.56 9.96 84.03 0.84 -11.73 16 9 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 10 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 11 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 12 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 C 0.09 3.06 5.84 86.85 0.51 3.57 16 17 N -0.59 -21.95 3.06 -791.58 -2.43 -24.37 16 18 C 0.60 24.13 7.65 86.74 0.66 24.79 16 19 O -0.57 -24.88 15.97 -3.98 -0.06 -24.94 16 20 C -0.02 -0.74 6.96 42.47 0.30 -0.45 16 21 C -0.18 -5.03 10.80 22.42 0.24 -4.79 16 22 C 0.00 0.10 10.82 83.39 0.90 1.00 16 23 N -0.25 -6.55 3.51 -186.72 -0.66 -7.20 16 24 C 0.16 3.64 6.70 38.37 0.26 3.90 16 25 C -0.17 -2.41 9.50 22.48 0.21 -2.20 16 26 C 0.13 1.70 11.17 84.63 0.95 2.64 16 27 N -0.51 -9.84 10.36 -196.05 -2.03 -11.87 16 28 C 0.12 2.46 11.17 84.63 0.95 3.41 16 29 C -0.18 -4.34 9.67 22.48 0.22 -4.12 16 30 N -0.26 -8.88 8.36 -48.15 -0.40 -9.29 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.47 6.90 -2.39 -0.02 1.46 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.11 2.57 7.85 -2.39 -0.02 2.55 16 36 H 0.37 20.36 7.86 -92.71 -0.73 19.64 16 37 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.07 2.97 6.20 -2.38 -0.01 2.96 16 40 H 0.18 4.27 8.06 -2.91 -0.02 4.24 16 41 H 0.24 1.99 7.04 -2.91 -0.02 1.97 16 42 H 0.18 1.06 6.78 -2.91 -0.02 1.04 16 43 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.18 2.89 8.06 -2.91 -0.02 2.86 16 45 H 0.14 3.73 7.74 -2.91 -0.02 3.71 16 Total: -1.00 -78.80 378.03 3.05 -75.75 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: 0.30 Total: 35.38 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 7.67 Total: 15.85 kcal Atomic # 7 Polarization: -143.29 SS G_CDS: -6.89 Total: -150.18 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.06 Total: -24.94 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -78.80 3.05 -75.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989171163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.540 kcal (2) G-P(sol) polarization free energy of solvation -78.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds