Wall clock time and date at job start Sat Apr 11 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 110.00135 * 2 1 4 4 C 1.54337 * 109.99218 * 238.96569 * 2 1 3 5 5 C 1.55162 * 103.02286 * 218.66472 * 4 2 1 6 6 H 1.08998 * 111.03548 * 277.22240 * 5 4 2 7 7 N 1.46498 * 111.00767 * 153.38030 * 5 4 2 8 8 C 1.36927 * 120.00058 * 161.34976 * 7 5 4 9 9 H 1.08001 * 120.00161 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99747 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99941 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00436 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47213 * 89.99282 * 12 10 8 14 14 H 1.48499 * 109.47402 * 210.00151 * 12 10 8 15 15 H 1.48510 * 109.46790 * 329.99779 * 12 10 8 16 16 C 1.54915 * 101.58034 * 35.30510 * 5 4 2 17 17 N 1.47022 * 109.88593 * 121.09951 * 2 1 3 18 18 C 1.34780 * 125.64224 * 298.39560 * 17 2 1 19 19 O 1.21572 * 120.00180 * 3.32709 * 18 17 2 20 20 C 1.47668 * 119.99474 * 183.32200 * 18 17 2 21 21 C 1.40230 * 120.49147 * 153.21368 * 20 18 17 22 22 C 1.38036 * 118.35581 * 179.97438 * 21 20 18 23 23 C 1.39155 * 119.25366 * 0.02562 * 22 21 20 24 24 N 1.39486 * 119.53038 * 179.72196 * 23 22 21 25 25 C 1.35918 * 126.10909 * 179.71110 * 24 23 22 26 26 C 1.35240 * 107.60902 * 179.89130 * 25 24 23 27 27 C 1.40008 * 107.97098 * 0.37145 * 26 25 24 28 28 N 1.30801 * 108.37301 * 359.76673 * 27 26 25 29 29 N 1.32452 * 120.94216 * 359.97438 * 23 22 21 30 30 C 1.31623 * 121.80056 * 0.02562 * 29 23 22 31 31 H 1.08998 * 109.47236 * 300.35375 * 1 2 3 32 32 H 1.09003 * 109.47269 * 60.35783 * 1 2 3 33 33 H 1.08999 * 109.47083 * 180.35571 * 1 2 3 34 34 H 1.08997 * 110.85018 * 100.19809 * 4 2 1 35 35 H 1.08997 * 110.51878 * 336.97802 * 4 2 1 36 36 H 0.97001 * 119.99391 * 341.34834 * 7 5 4 37 37 H 0.97001 * 120.00286 * 179.97438 * 11 10 8 38 38 H 1.08997 * 110.36807 * 204.15311 * 16 5 4 39 39 H 1.09004 * 110.36297 * 81.82767 * 16 5 4 40 40 H 1.08000 * 120.82324 * 0.02562 * 21 20 18 41 41 H 1.07992 * 120.37111 * 180.02562 * 22 21 20 42 42 H 1.07999 * 126.19305 * 0.04132 * 25 24 23 43 43 H 1.07997 * 126.01851 * 180.15277 * 26 25 24 44 44 H 1.07995 * 125.81402 * 179.75048 * 27 26 25 45 45 H 1.07998 * 119.68259 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7477 -1.2428 5 6 3.2863 -1.5183 -0.6916 6 1 4.1673 -0.8774 -0.6580 7 7 3.5476 -2.7242 -1.4814 8 6 4.7734 -3.3311 -1.4192 9 1 5.5476 -2.9212 -0.7876 10 6 5.0207 -4.4740 -2.1673 11 7 6.1988 -5.0578 -2.1071 12 14 3.6816 -5.1836 -3.2593 13 1 3.7738 -4.5786 -4.6123 14 1 3.8544 -6.6549 -3.3621 15 1 2.3517 -4.8813 -2.6715 16 6 2.8099 -1.8826 0.7368 17 7 2.0300 -0.7141 1.1838 18 6 1.8073 -0.3621 2.4657 19 8 1.0919 0.5874 2.7198 20 6 2.4323 -1.1299 3.5613 21 6 2.6969 -0.5206 4.7963 22 6 3.2818 -1.2796 5.7899 23 6 3.5877 -2.6131 5.5358 24 7 4.1842 -3.3839 6.5337 25 6 4.5331 -4.6936 6.4332 26 6 5.0812 -5.0627 7.6132 27 6 5.0611 -3.9519 8.4651 28 7 4.5250 -2.9478 7.8207 29 7 3.3252 -3.1597 4.3582 30 6 2.7684 -2.4726 3.3833 31 1 -0.3633 0.5193 0.8868 32 1 -0.3634 0.5083 -0.8932 33 1 -0.3633 -1.0276 0.0064 34 1 2.3597 -0.0449 -2.0191 35 1 1.3053 -1.4405 -1.6198 36 1 2.8521 -3.0926 -2.0485 37 1 6.3716 -5.8566 -2.6296 38 1 3.6655 -2.0413 1.3931 39 1 2.1801 -2.7719 0.7113 40 1 2.4485 0.5166 4.9662 41 1 3.4995 -0.8434 6.7535 42 1 4.3994 -5.3246 5.5669 43 1 5.4637 -6.0429 7.8568 44 1 5.4257 -3.9282 9.4813 45 1 2.5698 -2.9525 2.4364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989283079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:46 Heat of formation + Delta-G solvation = 125.040751 kcal Electronic energy + Delta-G solvation = -29064.375166 eV Core-core repulsion = 25085.177747 eV Total energy + Delta-G solvation = -3979.197419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81058 -40.77251 -39.46402 -37.57720 -34.46025 -34.05012 -32.85584 -32.03912 -31.62831 -30.55100 -29.49205 -29.01037 -25.99656 -25.03439 -24.10491 -23.67458 -22.16323 -21.17197 -21.06207 -20.53065 -19.44004 -18.58814 -17.87321 -17.38209 -16.65813 -16.42060 -15.76176 -15.47297 -15.20618 -14.67571 -14.49953 -14.32255 -14.09714 -13.82531 -13.67409 -13.62628 -13.42757 -13.30912 -12.98041 -12.80811 -12.71462 -12.47827 -12.37644 -11.95720 -11.50861 -11.22277 -11.15571 -10.93471 -10.80678 -10.63176 -10.48049 -10.31108 -10.21158 -10.12011 -9.72875 -9.68805 -9.42323 -9.13208 -8.63941 -8.48968 -7.48464 -5.91149 -3.30467 0.15752 0.92449 1.68828 1.85805 2.51182 2.76754 2.93255 3.27124 3.30138 3.37098 3.59452 3.96804 4.21979 4.32129 4.45849 4.57504 4.65845 4.72956 4.83708 4.86302 4.93678 5.02045 5.16661 5.25100 5.36937 5.40432 5.42228 5.46015 5.57600 5.61953 5.65831 5.68707 5.74063 5.81053 5.84995 5.92250 6.07632 6.12952 6.21295 6.25620 6.27087 6.45724 6.59359 6.79198 7.08849 7.52636 7.61073 7.81718 8.10905 8.26912 9.02974 9.74860 9.92092 11.26189 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008904 B = 0.003531 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.989635 B = 7928.173671 C =10656.723171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.077 0.923 4 C -0.140 4.140 5 C 0.179 3.821 6 H 0.075 0.925 7 N -0.735 5.735 8 C -0.257 4.257 9 H 0.092 0.908 10 C 0.013 3.987 11 N -0.926 5.926 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.059 3.941 17 N -0.603 5.603 18 C 0.581 3.419 19 O -0.542 6.542 20 C -0.196 4.196 21 C 0.004 3.996 22 C -0.176 4.176 23 C 0.388 3.612 24 N -0.328 5.328 25 C 0.085 3.915 26 C -0.266 4.266 27 C 0.066 3.934 28 N -0.287 5.287 29 N -0.505 5.505 30 C 0.164 3.836 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.365 0.635 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.186 0.814 43 H 0.158 0.842 44 H 0.194 0.806 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.476 5.605 15.117 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.095 0.905 4 C -0.179 4.179 5 C 0.067 3.933 6 H 0.093 0.907 7 N -0.376 5.376 8 C -0.387 4.387 9 H 0.110 0.890 10 C -0.184 4.184 11 N -0.573 5.573 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.066 4.066 17 N -0.336 5.336 18 C 0.369 3.631 19 O -0.421 6.421 20 C -0.202 4.202 21 C -0.023 4.023 22 C -0.198 4.198 23 C 0.161 3.839 24 N -0.106 5.106 25 C -0.056 4.056 26 C -0.294 4.294 27 C -0.123 4.123 28 N -0.105 5.105 29 N -0.217 5.217 30 C 0.005 3.995 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.199 0.801 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.172 0.828 41 H 0.171 0.829 42 H 0.204 0.796 43 H 0.175 0.825 44 H 0.210 0.790 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.748 6.413 15.200 18.226 hybrid contribution -0.681 -0.941 -0.659 1.335 sum -8.429 5.472 14.542 17.676 Atomic orbital electron populations 1.22148 0.94824 1.02317 1.02734 1.21542 0.94426 0.96236 0.84077 0.90506 1.23067 0.98831 0.99831 0.96159 1.21256 0.95142 0.88816 0.88091 0.90679 1.42660 1.13936 1.29092 1.51954 1.19042 0.89162 1.06785 1.23696 0.88992 1.24682 0.96397 0.97742 0.99598 1.69697 1.21179 1.21995 1.44387 0.86586 0.81958 0.78809 0.81326 1.20923 1.21593 1.20210 1.23839 0.94906 0.87509 1.00356 1.48495 1.51801 1.28810 1.04450 1.17501 0.80811 0.83584 0.81202 1.90754 1.38529 1.29418 1.83351 1.20922 1.06537 0.96437 0.96338 1.21547 0.90399 1.00601 0.89743 1.21524 1.03563 0.92530 1.02160 1.17937 0.91975 0.87903 0.86116 1.45771 1.46761 1.08269 1.09796 1.23073 0.96657 0.85266 1.00613 1.21710 1.12079 1.01617 0.94020 1.24196 0.96998 0.90651 1.00442 1.77440 1.20805 1.23387 0.88895 1.66995 1.16074 1.39318 0.99359 1.23616 0.89037 0.90212 0.96617 0.91251 0.91743 0.92520 0.89762 0.90421 0.80130 0.92814 0.90103 0.90596 0.82839 0.82883 0.79646 0.82453 0.78951 0.79590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.10 37.15 0.34 -1.60 16 2 C 0.14 1.81 3.48 -66.95 -0.23 1.58 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.14 -1.85 6.11 -24.89 -0.15 -2.00 16 5 C 0.18 2.96 3.69 -65.78 -0.24 2.72 16 6 H 0.08 1.31 8.13 -51.93 -0.42 0.88 16 7 N -0.73 -15.29 5.08 -51.35 -0.26 -15.55 16 8 C -0.26 -6.62 10.47 -15.06 -0.16 -6.78 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 10 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 11 N -0.93 -27.57 13.97 55.49 0.78 -26.79 16 12 Si 0.88 20.56 27.74 -169.99 -4.71 15.85 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.28 -5.94 6.52 56.52 0.37 -5.57 16 16 C 0.06 0.89 4.71 -2.53 -0.01 0.88 16 17 N -0.60 -8.49 3.06 -164.18 -0.50 -9.00 16 18 C 0.58 8.60 7.47 -12.41 -0.09 8.51 16 19 O -0.54 -9.10 15.63 5.30 0.08 -9.02 16 20 C -0.20 -2.66 5.72 -104.81 -0.60 -3.26 16 21 C 0.00 0.04 9.71 -38.91 -0.38 -0.33 16 22 C -0.18 -2.13 9.68 -39.32 -0.38 -2.51 16 23 C 0.39 5.36 7.55 -154.49 -1.17 4.19 16 24 N -0.33 -4.34 3.80 -12.10 -0.05 -4.39 16 25 C 0.08 0.98 11.09 -16.81 -0.19 0.79 16 26 C -0.27 -2.48 10.80 -39.99 -0.43 -2.91 16 27 C 0.07 0.62 12.02 -17.33 -0.21 0.41 16 28 N -0.29 -3.52 11.81 30.65 0.36 -3.16 16 29 N -0.50 -7.29 9.83 -11.99 -0.12 -7.41 16 30 C 0.16 2.26 9.12 -17.15 -0.16 2.10 16 31 H 0.07 0.93 6.77 -51.93 -0.35 0.58 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.00 7.70 -51.93 -0.40 0.60 16 36 H 0.37 7.46 5.57 -40.82 -0.23 7.24 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.08 1.25 6.14 -51.93 -0.32 0.93 16 39 H 0.08 1.13 7.31 -51.93 -0.38 0.75 16 40 H 0.15 1.60 7.94 -52.49 -0.42 1.18 16 41 H 0.15 1.65 7.67 -52.49 -0.40 1.24 16 42 H 0.19 1.93 8.05 -52.49 -0.42 1.50 16 43 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.19 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.19 2.49 4.53 -52.49 -0.24 2.25 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -32.20 372.72 -8.67 -40.86 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -5.71 Total: 10.94 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -4.15 Total: 2.03 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: 0.21 Total: -66.29 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.71 Total: 15.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.20 -8.67 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989283079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.904 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds