Wall clock time and date at job start Sat Apr 11 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 110.00135 * 2 1 4 4 C 1.54337 * 109.99218 * 238.96569 * 2 1 3 5 5 C 1.55162 * 103.02286 * 218.66472 * 4 2 1 6 6 H 1.08998 * 111.03548 * 277.22240 * 5 4 2 7 7 N 1.46498 * 111.00767 * 153.38030 * 5 4 2 8 8 C 1.36927 * 120.00058 * 161.34976 * 7 5 4 9 9 H 1.08001 * 120.00161 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99747 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99941 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00436 * 0.02562 * 10 8 7 13 13 H 1.48493 * 109.47213 * 89.99282 * 12 10 8 14 14 H 1.48499 * 109.47402 * 210.00151 * 12 10 8 15 15 H 1.48510 * 109.46790 * 329.99779 * 12 10 8 16 16 C 1.54915 * 101.58034 * 35.30510 * 5 4 2 17 17 N 1.47022 * 109.88593 * 121.09951 * 2 1 3 18 18 C 1.34780 * 125.64224 * 298.39560 * 17 2 1 19 19 O 1.21572 * 120.00180 * 3.32709 * 18 17 2 20 20 C 1.47668 * 119.99474 * 183.32200 * 18 17 2 21 21 C 1.40230 * 120.49147 * 153.21368 * 20 18 17 22 22 C 1.38036 * 118.35581 * 179.97438 * 21 20 18 23 23 C 1.39155 * 119.25366 * 0.02562 * 22 21 20 24 24 N 1.39486 * 119.53038 * 179.72196 * 23 22 21 25 25 C 1.35918 * 126.10909 * 179.71110 * 24 23 22 26 26 C 1.35240 * 107.60902 * 179.89130 * 25 24 23 27 27 C 1.40008 * 107.97098 * 0.37145 * 26 25 24 28 28 N 1.30801 * 108.37301 * 359.76673 * 27 26 25 29 29 N 1.32452 * 120.94216 * 359.97438 * 23 22 21 30 30 C 1.31623 * 121.80056 * 0.02562 * 29 23 22 31 31 H 1.08998 * 109.47236 * 300.35375 * 1 2 3 32 32 H 1.09003 * 109.47269 * 60.35783 * 1 2 3 33 33 H 1.08999 * 109.47083 * 180.35571 * 1 2 3 34 34 H 1.08997 * 110.85018 * 100.19809 * 4 2 1 35 35 H 1.08997 * 110.51878 * 336.97802 * 4 2 1 36 36 H 0.97001 * 119.99391 * 341.34834 * 7 5 4 37 37 H 0.97001 * 120.00286 * 179.97438 * 11 10 8 38 38 H 1.08997 * 110.36807 * 204.15311 * 16 5 4 39 39 H 1.09004 * 110.36297 * 81.82767 * 16 5 4 40 40 H 1.08000 * 120.82324 * 0.02562 * 21 20 18 41 41 H 1.07992 * 120.37111 * 180.02562 * 22 21 20 42 42 H 1.07999 * 126.19305 * 0.04132 * 25 24 23 43 43 H 1.07997 * 126.01851 * 180.15277 * 26 25 24 44 44 H 1.07995 * 125.81402 * 179.75048 * 27 26 25 45 45 H 1.07998 * 119.68259 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0576 -0.7477 -1.2428 5 6 3.2863 -1.5183 -0.6916 6 1 4.1673 -0.8774 -0.6580 7 7 3.5476 -2.7242 -1.4814 8 6 4.7734 -3.3311 -1.4192 9 1 5.5476 -2.9212 -0.7876 10 6 5.0207 -4.4740 -2.1673 11 7 6.1988 -5.0578 -2.1071 12 14 3.6816 -5.1836 -3.2593 13 1 3.7738 -4.5786 -4.6123 14 1 3.8544 -6.6549 -3.3621 15 1 2.3517 -4.8813 -2.6715 16 6 2.8099 -1.8826 0.7368 17 7 2.0300 -0.7141 1.1838 18 6 1.8073 -0.3621 2.4657 19 8 1.0919 0.5874 2.7198 20 6 2.4323 -1.1299 3.5613 21 6 2.6969 -0.5206 4.7963 22 6 3.2818 -1.2796 5.7899 23 6 3.5877 -2.6131 5.5358 24 7 4.1842 -3.3839 6.5337 25 6 4.5331 -4.6936 6.4332 26 6 5.0812 -5.0627 7.6132 27 6 5.0611 -3.9519 8.4651 28 7 4.5250 -2.9478 7.8207 29 7 3.3252 -3.1597 4.3582 30 6 2.7684 -2.4726 3.3833 31 1 -0.3633 0.5193 0.8868 32 1 -0.3634 0.5083 -0.8932 33 1 -0.3633 -1.0276 0.0064 34 1 2.3597 -0.0449 -2.0191 35 1 1.3053 -1.4405 -1.6198 36 1 2.8521 -3.0926 -2.0485 37 1 6.3716 -5.8566 -2.6296 38 1 3.6655 -2.0413 1.3931 39 1 2.1801 -2.7719 0.7113 40 1 2.4485 0.5166 4.9662 41 1 3.4995 -0.8434 6.7535 42 1 4.3994 -5.3246 5.5669 43 1 5.4637 -6.0429 7.8568 44 1 5.4257 -3.9282 9.4813 45 1 2.5698 -2.9525 2.4364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989283079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:45 Heat of formation + Delta-G solvation = 105.259072 kcal Electronic energy + Delta-G solvation = -29065.232964 eV Core-core repulsion = 25085.177747 eV Total energy + Delta-G solvation = -3980.055217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.70058 -41.83357 -40.54441 -38.83792 -36.12746 -35.02069 -33.87529 -33.53055 -33.01766 -31.40474 -30.58641 -30.38557 -27.11126 -26.11611 -25.41721 -25.03442 -23.29913 -22.10834 -22.10188 -21.75659 -20.58277 -19.67695 -19.49046 -18.56309 -17.81233 -17.54419 -16.73451 -16.65776 -16.36031 -16.13578 -15.68502 -15.45535 -15.27748 -14.96183 -14.82198 -14.72427 -14.58909 -14.38303 -14.31409 -13.91111 -13.74947 -13.71455 -13.54466 -13.18653 -12.94651 -12.86864 -12.33771 -12.07201 -11.99471 -11.93130 -11.82480 -11.58878 -11.57806 -11.35726 -11.21280 -10.97321 -10.79221 -10.30653 -9.81241 -9.45807 -9.32701 -8.00083 -5.36389 -0.84451 -0.07444 0.77964 0.97298 1.42721 1.45993 1.52899 1.64012 1.77876 1.80786 2.51315 2.54989 3.00217 3.15207 3.28887 3.32257 3.55839 3.57137 3.73954 3.77241 3.84697 3.99609 4.02735 4.09852 4.22286 4.32772 4.38136 4.45938 4.49079 4.59456 4.64303 4.70673 4.73957 4.79522 4.82976 4.99917 5.05173 5.07406 5.12518 5.23503 5.33744 5.41284 5.54743 5.78790 5.88698 6.19717 6.22608 6.34818 6.66976 6.94242 7.08817 7.81335 8.01094 9.20755 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008904 B = 0.003531 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.989635 B = 7928.173671 C =10656.723171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 H 0.082 0.918 4 C -0.125 4.125 5 C 0.169 3.831 6 H 0.063 0.937 7 N -0.735 5.735 8 C -0.234 4.234 9 H 0.058 0.942 10 C -0.057 4.057 11 N -0.982 5.982 12 Si 0.951 3.049 13 H -0.279 1.279 14 H -0.302 1.302 15 H -0.244 1.244 16 C 0.072 3.928 17 N -0.601 5.601 18 C 0.583 3.417 19 O -0.562 6.562 20 C -0.208 4.208 21 C 0.011 3.989 22 C -0.173 4.173 23 C 0.378 3.622 24 N -0.346 5.346 25 C 0.055 3.945 26 C -0.252 4.252 27 C 0.075 3.925 28 N -0.315 5.315 29 N -0.525 5.525 30 C 0.161 3.839 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.371 0.629 37 H 0.257 0.743 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.186 0.814 43 H 0.188 0.812 44 H 0.235 0.765 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.171 6.091 15.816 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 H 0.100 0.900 4 C -0.164 4.164 5 C 0.059 3.941 6 H 0.081 0.919 7 N -0.378 5.378 8 C -0.365 4.365 9 H 0.076 0.924 10 C -0.249 4.249 11 N -0.631 5.631 12 Si 0.779 3.221 13 H -0.206 1.206 14 H -0.229 1.229 15 H -0.168 1.168 16 C -0.053 4.053 17 N -0.333 5.333 18 C 0.372 3.628 19 O -0.442 6.442 20 C -0.214 4.214 21 C -0.015 4.015 22 C -0.195 4.195 23 C 0.150 3.850 24 N -0.125 5.125 25 C -0.084 4.084 26 C -0.280 4.280 27 C -0.114 4.114 28 N -0.133 5.133 29 N -0.238 5.238 30 C 0.002 3.998 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.206 0.794 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.189 0.811 41 H 0.185 0.815 42 H 0.203 0.797 43 H 0.205 0.795 44 H 0.251 0.749 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -9.490 6.941 15.921 19.792 hybrid contribution -0.052 -1.055 -0.691 1.262 sum -9.542 5.886 15.230 18.912 Atomic orbital electron populations 1.22081 0.93634 1.02392 1.03130 1.21690 0.95323 0.96261 0.83240 0.90017 1.23003 0.97005 0.99805 0.96562 1.21403 0.96521 0.87503 0.88716 0.91865 1.42547 1.12293 1.30106 1.52832 1.18965 0.90085 1.06034 1.21391 0.92406 1.25475 0.98767 0.98697 1.01982 1.69886 1.23927 1.22894 1.46430 0.85473 0.80397 0.76935 0.79326 1.20554 1.22903 1.16821 1.23523 0.94809 0.88019 0.98972 1.48483 1.51474 1.28497 1.04817 1.17597 0.80435 0.83282 0.81442 1.90742 1.39493 1.30361 1.83605 1.20889 1.07448 0.96344 0.96731 1.21746 0.89470 1.01280 0.89008 1.21662 1.03153 0.91969 1.02686 1.18231 0.91870 0.88708 0.86149 1.45926 1.47672 1.08750 1.10104 1.23389 0.97993 0.85162 1.01859 1.22132 1.10212 1.02795 0.92858 1.24966 0.95023 0.89668 1.01722 1.77421 1.22183 1.24889 0.88844 1.66975 1.16935 1.39918 0.99959 1.23575 0.89189 0.90425 0.96592 0.92834 0.89370 0.92545 0.87991 0.89320 0.79435 0.93380 0.91134 0.90163 0.81108 0.81516 0.79670 0.79517 0.74936 0.79774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.10 71.98 0.66 -2.63 16 2 C 0.14 3.25 3.48 45.34 0.16 3.41 16 3 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.13 -2.96 6.11 31.79 0.19 -2.77 16 5 C 0.17 5.41 3.69 46.39 0.17 5.58 16 6 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 7 N -0.74 -29.78 5.08 -316.37 -1.61 -31.39 16 8 C -0.23 -12.19 10.47 84.04 0.88 -11.31 16 9 H 0.06 3.36 8.06 -2.91 -0.02 3.33 16 10 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 11 N -0.98 -60.34 13.97 21.65 0.30 -60.03 16 12 Si 0.95 42.20 27.74 68.60 1.90 44.10 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 15 H -0.24 -9.41 6.52 99.48 0.65 -8.76 16 16 C 0.07 2.13 4.71 86.86 0.41 2.54 16 17 N -0.60 -16.32 3.06 -791.61 -2.43 -18.75 16 18 C 0.58 16.92 7.47 86.73 0.65 17.57 16 19 O -0.56 -18.38 15.63 -3.94 -0.06 -18.44 16 20 C -0.21 -5.63 5.72 -19.98 -0.11 -5.74 16 21 C 0.01 0.27 9.71 22.71 0.22 0.49 16 22 C -0.17 -4.14 9.68 22.44 0.22 -3.92 16 23 C 0.38 10.56 7.55 132.89 1.00 11.56 16 24 N -0.35 -9.12 3.80 -192.19 -0.73 -9.85 16 25 C 0.06 1.26 11.09 83.37 0.92 2.19 16 26 C -0.25 -4.21 10.80 22.01 0.24 -3.98 16 27 C 0.08 1.22 12.02 85.28 1.02 2.25 16 28 N -0.32 -7.38 11.81 -56.95 -0.67 -8.06 16 29 N -0.52 -15.57 9.83 -191.85 -1.89 -17.46 16 30 C 0.16 4.53 9.12 85.04 0.78 5.30 16 31 H 0.05 1.34 6.77 -2.39 -0.02 1.32 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.09 1.96 7.70 -2.39 -0.02 1.94 16 36 H 0.37 14.22 5.57 -92.71 -0.52 13.70 16 37 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.07 2.24 6.14 -2.39 -0.01 2.22 16 39 H 0.08 2.33 7.31 -2.39 -0.02 2.31 16 40 H 0.17 3.36 7.94 -2.91 -0.02 3.34 16 41 H 0.17 3.46 7.67 -2.91 -0.02 3.44 16 42 H 0.19 3.99 8.05 -2.91 -0.02 3.97 16 43 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 44 H 0.23 1.58 8.06 -2.91 -0.02 1.55 16 45 H 0.19 5.06 4.53 -2.91 -0.01 5.05 16 Total: -1.00 -71.45 372.72 3.15 -68.30 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.46 Total: 33.75 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 7.87 Total: 17.83 kcal Atomic # 7 Polarization: -138.52 SS G_CDS: -7.02 Total: -145.54 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.06 Total: -18.44 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.90 Total: 44.10 kcal Total: -71.45 3.15 -68.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989283079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.557 kcal (2) G-P(sol) polarization free energy of solvation -71.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds