Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.87940 * 2 1 4 4 C 1.54330 * 109.88089 * 238.82355 * 2 1 3 5 5 C 1.55153 * 102.94600 * 262.77630 * 4 2 1 6 6 H 1.09002 * 111.03759 * 82.58386 * 5 4 2 7 7 N 1.46495 * 111.00536 * 206.42489 * 5 4 2 8 8 C 1.36939 * 119.99811 * 198.65068 * 7 5 4 9 9 H 1.07995 * 120.00028 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99951 * 179.72794 * 8 7 5 11 11 N 1.31614 * 120.00325 * 180.27512 * 10 8 7 12 12 Si 1.86800 * 119.99969 * 0.26985 * 10 8 7 13 13 H 1.48503 * 109.46984 * 90.00244 * 12 10 8 14 14 H 1.48501 * 109.47247 * 210.00318 * 12 10 8 15 15 H 1.48505 * 109.47339 * 330.00439 * 12 10 8 16 16 C 1.54915 * 101.57957 * 324.50029 * 5 4 2 17 17 N 1.47022 * 109.88137 * 121.02107 * 2 1 3 18 18 C 1.34776 * 125.64794 * 300.43307 * 17 2 1 19 19 O 1.21574 * 119.99679 * 356.28882 * 18 17 2 20 20 C 1.47667 * 120.00308 * 176.28282 * 18 17 2 21 21 C 1.40226 * 120.49977 * 206.63781 * 20 18 17 22 22 C 1.38024 * 118.35843 * 179.77618 * 21 20 18 23 23 C 1.39159 * 119.25163 * 0.50244 * 22 21 20 24 24 N 1.39495 * 119.52700 * 179.76514 * 23 22 21 25 25 C 1.35921 * 126.10473 * 179.97438 * 24 23 22 26 26 C 1.35239 * 107.60523 * 179.97438 * 25 24 23 27 27 C 1.40006 * 107.97313 * 0.02562 * 26 25 24 28 28 N 1.30792 * 108.37630 * 359.71066 * 27 26 25 29 29 N 1.32440 * 120.94506 * 359.73583 * 23 22 21 30 30 C 1.31628 * 121.80018 * 0.02562 * 29 23 22 31 31 H 1.08999 * 109.46472 * 300.43782 * 1 2 3 32 32 H 1.09000 * 109.46762 * 60.43799 * 1 2 3 33 33 H 1.08995 * 109.47188 * 180.43410 * 1 2 3 34 34 H 1.09001 * 110.71931 * 144.41169 * 4 2 1 35 35 H 1.08995 * 110.71752 * 21.14146 * 4 2 1 36 36 H 0.96995 * 120.00140 * 18.65008 * 7 5 4 37 37 H 0.96996 * 120.00539 * 179.97438 * 11 10 8 38 38 H 1.08995 * 110.36352 * 155.84732 * 16 5 4 39 39 H 1.09000 * 110.36275 * 278.16603 * 16 5 4 40 40 H 1.08004 * 120.82111 * 0.02576 * 21 20 18 41 41 H 1.07997 * 120.37739 * 180.23709 * 22 21 20 42 42 H 1.07995 * 126.19919 * 359.95985 * 25 24 23 43 43 H 1.08002 * 126.01300 * 180.02562 * 26 25 24 44 44 H 1.07993 * 125.81102 * 180.02562 * 27 26 25 45 45 H 1.08002 * 119.68344 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0250 0.0000 4 6 2.0549 -0.7513 -1.2417 5 6 2.3519 -2.1705 -0.6895 6 1 1.4455 -2.7752 -0.6566 7 7 3.3936 -2.8333 -1.4778 8 6 3.5387 -4.1935 -1.4148 9 1 2.8854 -4.7776 -0.7836 10 6 4.5222 -4.8222 -2.1661 11 7 4.6581 -6.1301 -2.1097 12 14 5.6526 -3.8119 -3.2574 13 1 6.8531 -3.4046 -2.4840 14 1 6.0699 -4.6266 -4.4267 15 1 4.9334 -2.6012 -3.7289 16 6 2.8568 -1.8488 0.7393 17 7 2.0300 -0.7125 1.1848 18 6 1.7754 -0.3812 2.4662 19 8 1.1339 0.6200 2.7191 20 6 2.2757 -1.2342 3.5628 21 6 1.6122 -1.2677 4.7978 22 6 2.1153 -2.0842 5.7904 23 6 3.2609 -2.8331 5.5392 24 7 3.7772 -3.6565 6.5399 25 6 4.8821 -4.4417 6.4403 26 6 5.0412 -5.0761 7.6240 27 6 4.0055 -4.6703 8.4742 28 7 3.2527 -3.8172 7.8291 29 7 3.8678 -2.7759 4.3634 30 6 3.4194 -2.0145 3.3878 31 1 -0.3632 0.5206 0.8861 32 1 -0.3633 0.5070 -0.8939 33 1 -0.3633 -1.0276 0.0078 34 1 2.9657 -0.2855 -1.6179 35 1 1.2918 -0.7918 -2.0189 36 1 3.9806 -2.3087 -2.0445 37 1 5.3451 -6.5694 -2.6349 38 1 2.7088 -2.7062 1.3958 39 1 3.9092 -1.5659 0.7149 40 1 0.7270 -0.6724 4.9667 41 1 1.6279 -2.1379 6.7526 42 1 5.5178 -4.5412 5.5729 43 1 5.8286 -5.7732 7.8702 44 1 3.8567 -5.0011 9.4914 45 1 3.9410 -1.9942 2.4423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989283080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = 125.251327 kcal Electronic energy + Delta-G solvation = -29082.270640 eV Core-core repulsion = 25103.082352 eV Total energy + Delta-G solvation = -3979.188288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.81074 -40.77879 -39.47732 -37.59343 -34.44581 -34.05007 -32.86087 -32.06087 -31.58776 -30.55307 -29.48377 -28.94143 -25.94940 -25.08128 -24.15201 -23.68830 -22.23490 -21.17873 -21.09971 -20.46891 -19.42585 -18.60323 -17.86568 -17.46050 -16.62975 -15.96775 -15.67882 -15.63224 -15.44025 -14.82900 -14.53931 -14.24920 -13.99260 -13.75612 -13.67393 -13.53879 -13.43374 -13.39128 -12.98399 -12.86015 -12.80773 -12.60836 -12.07411 -12.00068 -11.63253 -11.17431 -11.13340 -10.94613 -10.76474 -10.65935 -10.45974 -10.26689 -10.21146 -10.13680 -9.73519 -9.70162 -9.42338 -9.12686 -8.64112 -8.49267 -7.48415 -5.91122 -3.30497 0.15745 0.92422 1.68837 1.85769 2.51194 2.75432 2.94041 3.27577 3.29974 3.37110 3.59635 3.96787 4.21931 4.32004 4.45886 4.57441 4.65952 4.73356 4.83156 4.88213 4.93192 5.04401 5.16382 5.19195 5.39031 5.40427 5.42028 5.44414 5.61946 5.63263 5.67497 5.68758 5.74944 5.77924 5.88801 5.94980 6.05369 6.09284 6.21086 6.26630 6.31700 6.43303 6.60717 6.79176 7.08828 7.52463 7.61047 7.81825 8.10761 8.26928 9.03069 9.74944 9.92125 11.26221 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008900 B = 0.003536 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.455641 B = 7917.760264 C =10657.258121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.075 0.925 4 C -0.140 4.140 5 C 0.180 3.820 6 H 0.075 0.925 7 N -0.735 5.735 8 C -0.257 4.257 9 H 0.092 0.908 10 C 0.013 3.987 11 N -0.926 5.926 12 Si 0.883 3.117 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.059 3.941 17 N -0.603 5.603 18 C 0.581 3.419 19 O -0.542 6.542 20 C -0.196 4.196 21 C 0.004 3.996 22 C -0.176 4.176 23 C 0.388 3.612 24 N -0.328 5.328 25 C 0.085 3.915 26 C -0.266 4.266 27 C 0.066 3.934 28 N -0.287 5.287 29 N -0.505 5.505 30 C 0.164 3.836 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.365 0.635 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.187 0.813 43 H 0.158 0.842 44 H 0.194 0.806 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.255 8.536 15.121 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.093 0.907 4 C -0.179 4.179 5 C 0.068 3.932 6 H 0.093 0.907 7 N -0.377 5.377 8 C -0.387 4.387 9 H 0.110 0.890 10 C -0.184 4.184 11 N -0.573 5.573 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.067 4.067 17 N -0.336 5.336 18 C 0.369 3.631 19 O -0.421 6.421 20 C -0.202 4.202 21 C -0.023 4.023 22 C -0.198 4.198 23 C 0.161 3.839 24 N -0.106 5.106 25 C -0.056 4.056 26 C -0.294 4.294 27 C -0.123 4.123 28 N -0.105 5.105 29 N -0.217 5.217 30 C 0.005 3.995 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.199 0.801 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.171 0.829 41 H 0.171 0.829 42 H 0.204 0.796 43 H 0.175 0.825 44 H 0.210 0.790 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.913 9.081 15.203 18.136 hybrid contribution 1.101 0.305 -0.672 1.325 sum -2.812 9.385 14.531 17.526 Atomic orbital electron populations 1.22145 0.94716 1.02557 1.02634 1.21521 0.94650 0.96022 0.84063 0.90718 1.23043 1.01934 0.96732 0.96192 1.21243 0.92644 0.91211 0.88089 0.90749 1.42666 1.37802 1.05337 1.51882 1.19041 1.14929 0.81153 1.23569 0.89009 1.24679 0.98888 0.95321 0.99516 1.69692 1.35897 1.07319 1.44350 0.86592 0.81493 0.79684 0.80970 1.20878 1.21599 1.20184 1.23842 0.94815 0.87624 1.00379 1.48490 1.50029 1.30599 1.04434 1.17497 0.79875 0.84503 0.81201 1.90758 1.41374 1.26526 1.83403 1.20920 1.00094 1.02902 0.96320 1.21541 0.97838 0.93177 0.89732 1.21523 0.96908 0.99162 1.02188 1.17937 0.90476 0.89410 0.86097 1.45777 1.21523 1.33734 1.09575 1.23073 0.89865 0.92064 1.00598 1.21711 1.04627 1.09137 0.93958 1.24193 0.93062 0.94550 1.00477 1.77439 1.22501 1.21772 0.88813 1.66991 1.32963 1.22401 0.99389 1.23619 0.92033 0.87233 0.96590 0.91450 0.91679 0.92199 0.90558 0.89643 0.80124 0.92812 0.90120 0.90503 0.82850 0.82884 0.79642 0.82453 0.78953 0.79575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.06 37.16 0.34 -1.62 16 2 C 0.14 1.82 3.48 -66.95 -0.23 1.58 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -1.86 6.12 -24.90 -0.15 -2.01 16 5 C 0.18 2.98 3.69 -65.78 -0.24 2.74 16 6 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 7 N -0.74 -15.30 5.08 -51.35 -0.26 -15.56 16 8 C -0.26 -6.62 10.47 -15.06 -0.16 -6.78 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 10 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 11 N -0.93 -27.56 13.97 55.49 0.78 -26.79 16 12 Si 0.88 20.54 27.74 -169.99 -4.72 15.83 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -5.96 6.51 56.52 0.37 -5.59 16 16 C 0.06 0.88 4.72 -2.53 -0.01 0.87 16 17 N -0.60 -8.48 3.08 -164.18 -0.51 -8.99 16 18 C 0.58 8.60 7.41 -12.41 -0.09 8.51 16 19 O -0.54 -9.12 15.74 5.30 0.08 -9.03 16 20 C -0.20 -2.66 5.72 -104.81 -0.60 -3.26 16 21 C 0.00 0.04 9.71 -38.91 -0.38 -0.33 16 22 C -0.18 -2.13 9.68 -39.32 -0.38 -2.51 16 23 C 0.39 5.36 7.55 -154.49 -1.17 4.19 16 24 N -0.33 -4.34 3.80 -12.10 -0.05 -4.39 16 25 C 0.08 0.98 11.09 -16.81 -0.19 0.79 16 26 C -0.27 -2.48 10.80 -39.99 -0.43 -2.91 16 27 C 0.07 0.62 12.02 -17.33 -0.21 0.41 16 28 N -0.29 -3.52 11.81 30.64 0.36 -3.15 16 29 N -0.50 -7.28 9.83 -11.99 -0.12 -7.40 16 30 C 0.16 2.26 9.12 -17.15 -0.16 2.10 16 31 H 0.07 0.90 6.86 -51.93 -0.36 0.54 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.98 8.00 -51.93 -0.42 0.56 16 35 H 0.08 1.04 7.83 -51.93 -0.41 0.64 16 36 H 0.37 7.46 5.57 -40.82 -0.23 7.23 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.08 1.25 6.14 -51.93 -0.32 0.93 16 39 H 0.08 1.13 7.31 -51.93 -0.38 0.75 16 40 H 0.15 1.60 7.94 -52.48 -0.42 1.18 16 41 H 0.15 1.65 7.67 -52.49 -0.40 1.24 16 42 H 0.19 1.93 8.05 -52.49 -0.42 1.50 16 43 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.19 2.48 4.54 -52.49 -0.24 2.24 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -32.23 372.83 -8.67 -40.91 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -5.71 Total: 10.95 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -4.15 Total: 2.01 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: 0.21 Total: -66.27 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.72 Total: 15.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.23 -8.67 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989283080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.156 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds