Wall clock time and date at job start Sat Apr 11 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.87940 * 2 1 4 4 C 1.54330 * 109.88089 * 238.82355 * 2 1 3 5 5 C 1.55153 * 102.94600 * 262.77630 * 4 2 1 6 6 H 1.09002 * 111.03759 * 82.58386 * 5 4 2 7 7 N 1.46495 * 111.00536 * 206.42489 * 5 4 2 8 8 C 1.36939 * 119.99811 * 198.65068 * 7 5 4 9 9 H 1.07995 * 120.00028 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99951 * 179.72794 * 8 7 5 11 11 N 1.31614 * 120.00325 * 180.27512 * 10 8 7 12 12 Si 1.86800 * 119.99969 * 0.26985 * 10 8 7 13 13 H 1.48503 * 109.46984 * 90.00244 * 12 10 8 14 14 H 1.48501 * 109.47247 * 210.00318 * 12 10 8 15 15 H 1.48505 * 109.47339 * 330.00439 * 12 10 8 16 16 C 1.54915 * 101.57957 * 324.50029 * 5 4 2 17 17 N 1.47022 * 109.88137 * 121.02107 * 2 1 3 18 18 C 1.34776 * 125.64794 * 300.43307 * 17 2 1 19 19 O 1.21574 * 119.99679 * 356.28882 * 18 17 2 20 20 C 1.47667 * 120.00308 * 176.28282 * 18 17 2 21 21 C 1.40226 * 120.49977 * 206.63781 * 20 18 17 22 22 C 1.38024 * 118.35843 * 179.77618 * 21 20 18 23 23 C 1.39159 * 119.25163 * 0.50244 * 22 21 20 24 24 N 1.39495 * 119.52700 * 179.76514 * 23 22 21 25 25 C 1.35921 * 126.10473 * 179.97438 * 24 23 22 26 26 C 1.35239 * 107.60523 * 179.97438 * 25 24 23 27 27 C 1.40006 * 107.97313 * 0.02562 * 26 25 24 28 28 N 1.30792 * 108.37630 * 359.71066 * 27 26 25 29 29 N 1.32440 * 120.94506 * 359.73583 * 23 22 21 30 30 C 1.31628 * 121.80018 * 0.02562 * 29 23 22 31 31 H 1.08999 * 109.46472 * 300.43782 * 1 2 3 32 32 H 1.09000 * 109.46762 * 60.43799 * 1 2 3 33 33 H 1.08995 * 109.47188 * 180.43410 * 1 2 3 34 34 H 1.09001 * 110.71931 * 144.41169 * 4 2 1 35 35 H 1.08995 * 110.71752 * 21.14146 * 4 2 1 36 36 H 0.96995 * 120.00140 * 18.65008 * 7 5 4 37 37 H 0.96996 * 120.00539 * 179.97438 * 11 10 8 38 38 H 1.08995 * 110.36352 * 155.84732 * 16 5 4 39 39 H 1.09000 * 110.36275 * 278.16603 * 16 5 4 40 40 H 1.08004 * 120.82111 * 0.02576 * 21 20 18 41 41 H 1.07997 * 120.37739 * 180.23709 * 22 21 20 42 42 H 1.07995 * 126.19919 * 359.95985 * 25 24 23 43 43 H 1.08002 * 126.01300 * 180.02562 * 26 25 24 44 44 H 1.07993 * 125.81102 * 180.02562 * 27 26 25 45 45 H 1.08002 * 119.68344 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0250 0.0000 4 6 2.0549 -0.7513 -1.2417 5 6 2.3519 -2.1705 -0.6895 6 1 1.4455 -2.7752 -0.6566 7 7 3.3936 -2.8333 -1.4778 8 6 3.5387 -4.1935 -1.4148 9 1 2.8854 -4.7776 -0.7836 10 6 4.5222 -4.8222 -2.1661 11 7 4.6581 -6.1301 -2.1097 12 14 5.6526 -3.8119 -3.2574 13 1 6.8531 -3.4046 -2.4840 14 1 6.0699 -4.6266 -4.4267 15 1 4.9334 -2.6012 -3.7289 16 6 2.8568 -1.8488 0.7393 17 7 2.0300 -0.7125 1.1848 18 6 1.7754 -0.3812 2.4662 19 8 1.1339 0.6200 2.7191 20 6 2.2757 -1.2342 3.5628 21 6 1.6122 -1.2677 4.7978 22 6 2.1153 -2.0842 5.7904 23 6 3.2609 -2.8331 5.5392 24 7 3.7772 -3.6565 6.5399 25 6 4.8821 -4.4417 6.4403 26 6 5.0412 -5.0761 7.6240 27 6 4.0055 -4.6703 8.4742 28 7 3.2527 -3.8172 7.8291 29 7 3.8678 -2.7759 4.3634 30 6 3.4194 -2.0145 3.3878 31 1 -0.3632 0.5206 0.8861 32 1 -0.3633 0.5070 -0.8939 33 1 -0.3633 -1.0276 0.0078 34 1 2.9657 -0.2855 -1.6179 35 1 1.2918 -0.7918 -2.0189 36 1 3.9806 -2.3087 -2.0445 37 1 5.3451 -6.5694 -2.6349 38 1 2.7088 -2.7062 1.3958 39 1 3.9092 -1.5659 0.7149 40 1 0.7270 -0.6724 4.9667 41 1 1.6279 -2.1379 6.7526 42 1 5.5178 -4.5412 5.5729 43 1 5.8286 -5.7732 7.8702 44 1 3.8567 -5.0011 9.4914 45 1 3.9410 -1.9942 2.4423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989283080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:48 Heat of formation + Delta-G solvation = 105.427993 kcal Electronic energy + Delta-G solvation = -29083.130244 eV Core-core repulsion = 25103.082352 eV Total energy + Delta-G solvation = -3980.047892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70081 -41.84044 -40.55686 -38.85234 -36.11887 -35.02216 -33.88048 -33.52341 -33.01902 -31.40704 -30.50361 -30.38623 -27.06412 -26.17827 -25.42814 -25.05038 -23.43293 -22.18634 -22.01501 -21.69753 -20.59323 -19.67518 -19.50378 -18.64270 -17.70876 -17.19719 -16.85652 -16.67506 -16.42132 -16.21677 -15.74623 -15.47592 -15.25831 -14.86813 -14.72653 -14.63826 -14.62315 -14.55679 -14.31050 -14.02056 -13.77777 -13.71612 -13.38272 -13.20197 -13.08560 -12.83326 -12.27364 -12.11745 -12.00002 -11.92099 -11.81143 -11.63137 -11.46609 -11.40814 -11.21285 -10.95938 -10.80432 -10.30580 -9.81607 -9.45923 -9.32482 -8.00012 -5.36404 -0.84412 -0.07398 0.78004 0.97296 1.42995 1.45944 1.53083 1.62730 1.77917 1.81780 2.51402 2.55173 3.00253 3.15509 3.28866 3.32240 3.55800 3.58899 3.74325 3.76708 3.82380 3.99538 4.02509 4.07032 4.27099 4.32871 4.37661 4.44840 4.49388 4.59761 4.65248 4.68682 4.72808 4.79420 4.86723 4.99707 5.01161 5.11374 5.12781 5.20905 5.30726 5.43567 5.54737 5.78868 5.88685 6.19748 6.22631 6.34667 6.66992 6.94133 7.08941 7.81422 8.01168 9.20816 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008900 B = 0.003536 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.455641 B = 7917.760264 C =10657.258121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.085 0.915 4 C -0.126 4.126 5 C 0.171 3.829 6 H 0.062 0.938 7 N -0.736 5.736 8 C -0.234 4.234 9 H 0.058 0.942 10 C -0.057 4.057 11 N -0.982 5.982 12 Si 0.951 3.049 13 H -0.279 1.279 14 H -0.302 1.302 15 H -0.244 1.244 16 C 0.071 3.929 17 N -0.600 5.600 18 C 0.584 3.416 19 O -0.562 6.562 20 C -0.208 4.208 21 C 0.011 3.989 22 C -0.173 4.173 23 C 0.378 3.622 24 N -0.347 5.347 25 C 0.055 3.945 26 C -0.252 4.252 27 C 0.075 3.925 28 N -0.315 5.315 29 N -0.525 5.525 30 C 0.161 3.839 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.371 0.629 37 H 0.257 0.743 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.186 0.814 43 H 0.188 0.812 44 H 0.235 0.765 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 10.285 15.771 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.103 0.897 4 C -0.164 4.164 5 C 0.060 3.940 6 H 0.080 0.920 7 N -0.378 5.378 8 C -0.365 4.365 9 H 0.076 0.924 10 C -0.249 4.249 11 N -0.631 5.631 12 Si 0.778 3.222 13 H -0.205 1.205 14 H -0.229 1.229 15 H -0.168 1.168 16 C -0.054 4.054 17 N -0.333 5.333 18 C 0.373 3.627 19 O -0.442 6.442 20 C -0.214 4.214 21 C -0.015 4.015 22 C -0.195 4.195 23 C 0.151 3.849 24 N -0.125 5.125 25 C -0.084 4.084 26 C -0.280 4.280 27 C -0.114 4.114 28 N -0.133 5.133 29 N -0.238 5.238 30 C 0.002 3.998 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.206 0.794 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.189 0.811 41 H 0.185 0.815 42 H 0.203 0.797 43 H 0.205 0.795 44 H 0.251 0.749 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.887 10.886 15.872 19.634 hybrid contribution 1.025 -0.317 -0.682 1.271 sum -2.862 10.569 15.189 18.724 Atomic orbital electron populations 1.22102 0.93962 1.02212 1.03185 1.21669 0.95255 0.96299 0.83217 0.89652 1.22986 1.03061 0.93818 0.96583 1.21381 0.91017 0.92838 0.88729 0.92014 1.42556 1.38994 1.03538 1.52746 1.18961 1.13045 0.83168 1.21292 0.92435 1.25471 1.01209 0.96312 1.01908 1.69881 1.37310 1.09600 1.46344 0.85481 0.79438 0.78900 0.78379 1.20485 1.22934 1.16793 1.23539 0.95160 0.87768 0.98954 1.48475 1.49777 1.30208 1.04793 1.17589 0.79437 0.84246 0.81440 1.90745 1.42442 1.27394 1.83660 1.20887 1.00501 1.03323 0.96707 1.21739 0.97959 0.92803 0.89005 1.21660 0.96432 0.98681 1.02710 1.18230 0.90895 0.89689 0.86135 1.45932 1.22259 1.34393 1.09879 1.23389 0.90143 0.93021 1.01845 1.22132 1.04810 1.08261 0.92796 1.24962 0.91854 0.92799 1.01761 1.77420 1.23803 1.23350 0.88759 1.66972 1.33755 1.23073 0.99989 1.23586 0.92246 0.87365 0.96577 0.92787 0.89263 0.92927 0.89313 0.88033 0.79424 0.93379 0.91175 0.89922 0.81137 0.81524 0.79670 0.79517 0.74938 0.79714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.06 71.98 0.65 -2.81 16 2 C 0.14 3.26 3.48 45.34 0.16 3.42 16 3 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 4 C -0.13 -2.99 6.12 31.78 0.19 -2.80 16 5 C 0.17 5.47 3.69 46.39 0.17 5.64 16 6 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 7 N -0.74 -29.80 5.08 -316.38 -1.61 -31.40 16 8 C -0.23 -12.19 10.47 84.03 0.88 -11.31 16 9 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 10 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 11 N -0.98 -60.32 13.97 21.65 0.30 -60.02 16 12 Si 0.95 42.15 27.74 68.60 1.90 44.05 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 15 H -0.24 -9.40 6.51 99.48 0.65 -8.75 16 16 C 0.07 2.09 4.72 86.86 0.41 2.50 16 17 N -0.60 -16.28 3.08 -791.61 -2.44 -18.72 16 18 C 0.58 16.91 7.41 86.73 0.64 17.56 16 19 O -0.56 -18.39 15.74 -3.95 -0.06 -18.45 16 20 C -0.21 -5.62 5.72 -19.98 -0.11 -5.74 16 21 C 0.01 0.27 9.71 22.70 0.22 0.49 16 22 C -0.17 -4.14 9.68 22.44 0.22 -3.93 16 23 C 0.38 10.56 7.55 132.89 1.00 11.57 16 24 N -0.35 -9.13 3.80 -192.19 -0.73 -9.86 16 25 C 0.06 1.26 11.09 83.37 0.92 2.19 16 26 C -0.25 -4.21 10.80 22.01 0.24 -3.98 16 27 C 0.08 1.22 12.02 85.28 1.02 2.25 16 28 N -0.32 -7.38 11.81 -56.96 -0.67 -8.06 16 29 N -0.52 -15.57 9.83 -191.83 -1.88 -17.45 16 30 C 0.16 4.52 9.12 85.04 0.78 5.30 16 31 H 0.05 1.36 6.86 -2.39 -0.02 1.34 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.95 8.00 -2.39 -0.02 1.93 16 35 H 0.10 2.13 7.83 -2.39 -0.02 2.11 16 36 H 0.37 14.21 5.57 -92.71 -0.52 13.70 16 37 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.07 2.22 6.14 -2.39 -0.01 2.21 16 39 H 0.08 2.36 7.31 -2.39 -0.02 2.34 16 40 H 0.17 3.36 7.94 -2.91 -0.02 3.34 16 41 H 0.17 3.47 7.67 -2.91 -0.02 3.44 16 42 H 0.19 4.00 8.05 -2.91 -0.02 3.98 16 43 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 44 H 0.23 1.58 8.06 -2.91 -0.02 1.55 16 45 H 0.19 5.05 4.54 -2.91 -0.01 5.03 16 Total: -1.00 -71.49 372.83 3.13 -68.36 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.46 Total: 33.90 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 7.86 Total: 17.65 kcal Atomic # 7 Polarization: -138.48 SS G_CDS: -7.03 Total: -145.51 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.06 Total: -18.45 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.90 Total: 44.05 kcal Total: -71.49 3.13 -68.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989283080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.787 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds