Wall clock time and date at job start Sat Apr 11 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.99675 * 2 1 4 4 C 1.54338 * 109.77459 * 121.16108 * 2 1 3 5 5 C 1.55160 * 103.01656 * 97.49890 * 4 2 1 6 6 H 1.09005 * 111.00165 * 277.22447 * 5 4 2 7 7 N 1.46499 * 111.00178 * 153.38290 * 5 4 2 8 8 C 1.36942 * 120.00004 * 161.34815 * 7 5 4 9 9 H 1.07993 * 120.00052 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00009 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99982 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 119.99964 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47255 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47346 * 119.99957 * 12 10 8 15 15 H 1.48497 * 109.47227 * 239.99967 * 12 10 8 16 16 C 1.54908 * 101.58384 * 35.30390 * 5 4 2 17 17 N 1.47017 * 109.88089 * 238.90235 * 2 1 3 18 18 C 1.34774 * 125.65264 * 59.56586 * 17 2 1 19 19 O 1.21550 * 119.99691 * 3.49461 * 18 17 2 20 20 C 1.47861 * 120.00252 * 183.50018 * 18 17 2 21 21 C 1.39661 * 120.08514 * 332.58391 * 20 18 17 22 22 C 1.38014 * 120.09432 * 179.69939 * 21 20 18 23 23 C 1.38164 * 120.27364 * 0.27732 * 22 21 20 24 24 C 1.39407 * 120.17221 * 359.97438 * 23 22 21 25 25 C 1.48425 * 120.05098 * 179.97438 * 24 23 22 26 26 N 1.33972 * 125.64920 * 179.69258 * 25 24 23 27 27 C 1.30683 * 109.77488 * 179.81681 * 26 25 24 28 28 N 1.34518 * 108.29501 * 0.44244 * 27 26 25 29 29 H 0.96999 * 126.74324 * 179.74960 * 28 27 26 30 30 N 1.31492 * 125.64611 * 359.97438 * 25 24 23 31 31 C 1.39097 * 119.90008 * 359.97438 * 24 23 22 32 32 H 1.08997 * 109.47423 * 179.64353 * 1 2 3 33 33 H 1.09005 * 109.47159 * 299.65077 * 1 2 3 34 34 H 1.09001 * 109.46927 * 59.64148 * 1 2 3 35 35 H 1.09001 * 110.85243 * 339.02680 * 4 2 1 36 36 H 1.08995 * 110.66710 * 215.87918 * 4 2 1 37 37 H 0.97003 * 120.00214 * 341.34596 * 7 5 4 38 38 H 0.96996 * 119.99979 * 180.02562 * 11 10 8 39 39 H 1.08999 * 110.36838 * 204.15009 * 16 5 4 40 40 H 1.09003 * 110.36386 * 81.82751 * 16 5 4 41 41 H 1.07997 * 119.95177 * 359.97438 * 21 20 18 42 42 H 1.07996 * 119.86482 * 180.24856 * 22 21 20 43 43 H 1.08002 * 119.91260 * 179.97438 * 23 22 21 44 44 H 1.08005 * 125.85320 * 180.20403 * 27 26 25 45 45 H 1.08004 * 120.13305 * 180.02562 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7515 1.2428 5 6 2.3561 -2.1697 0.6916 6 1 1.4520 -2.7778 0.6581 7 7 3.3998 -2.8276 1.4815 8 6 3.5510 -4.1872 1.4193 9 1 2.9005 -4.7745 0.7883 10 6 4.5403 -4.8105 2.1675 11 7 5.3334 -4.0946 2.9362 12 14 4.7470 -6.6650 2.0821 13 1 3.7386 -7.2331 1.1517 14 1 6.1109 -6.9891 1.5924 15 1 4.5553 -7.2472 3.4346 16 6 2.8612 -1.8466 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.7754 -0.3845 -2.4657 19 8 1.1306 0.6140 -2.7199 20 6 2.2805 -1.2377 -3.5627 21 6 3.4342 -2.0031 -3.3799 22 6 3.9023 -2.8043 -4.4016 23 6 3.2369 -2.8497 -5.6116 24 6 2.0872 -2.0863 -5.8081 25 6 1.3748 -2.1368 -7.1093 26 7 0.2618 -1.4576 -7.4170 27 6 -0.0969 -1.7290 -8.6440 28 7 0.7833 -2.6077 -9.1566 29 1 0.7683 -2.9915 -10.0473 30 7 1.7288 -2.8595 -8.1492 31 6 1.6085 -1.2772 -4.7829 32 1 -0.3634 -1.0276 -0.0064 33 1 -0.3634 0.5084 0.8931 34 1 -0.3633 0.5194 -0.8868 35 1 1.2884 -0.7950 2.0193 36 1 2.9599 -0.2827 1.6226 37 1 3.9839 -2.3001 2.0486 38 1 6.0249 -4.5301 3.4586 39 1 2.7178 -2.7049 -1.3931 40 1 3.9123 -1.5589 -0.7113 41 1 3.9584 -1.9715 -2.4362 42 1 4.7926 -3.3977 -4.2548 43 1 3.6086 -3.4784 -6.4073 44 1 -0.9552 -1.3211 -9.1571 45 1 0.7178 -0.6845 -4.9309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989291449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:55 Heat of formation + Delta-G solvation = 105.929790 kcal Electronic energy + Delta-G solvation = -28862.049475 eV Core-core repulsion = 24882.023342 eV Total energy + Delta-G solvation = -3980.026133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.35735 -40.38575 -38.65374 -37.23446 -34.21189 -33.61312 -32.44923 -31.66646 -31.35235 -30.89873 -29.80148 -28.35148 -25.68676 -24.55591 -23.91431 -23.60596 -22.87874 -21.44294 -20.73087 -20.20766 -19.04448 -18.64173 -17.34619 -16.93988 -16.40847 -15.88274 -15.78399 -15.51006 -15.30433 -14.75125 -14.54146 -14.28016 -13.95299 -13.68742 -13.35582 -13.25480 -13.02558 -12.95891 -12.81111 -12.49985 -12.44036 -12.01695 -11.81619 -11.61543 -11.33888 -11.16677 -10.97326 -10.81503 -10.63568 -10.56376 -10.40434 -10.29010 -10.25880 -9.99164 -9.81341 -9.67976 -9.04191 -9.01469 -8.66811 -8.34971 -7.11569 -5.88073 -3.19033 0.62675 1.04740 1.51508 2.27701 2.60663 3.05558 3.20087 3.37455 3.44397 3.45877 3.67685 3.89238 4.27463 4.47631 4.56359 4.63778 4.91481 5.01151 5.03165 5.14863 5.21840 5.26480 5.42131 5.46305 5.56805 5.58574 5.62873 5.78788 5.83548 5.85971 5.90686 5.98862 6.09093 6.09607 6.19737 6.26896 6.28987 6.32471 6.36966 6.43465 6.52485 6.64283 6.66324 6.77075 6.83999 7.61965 7.70537 7.78675 8.29136 8.37460 9.41742 9.95021 10.30026 11.33867 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.002935 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.432668 B = 9536.258690 C =11447.415331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.072 0.928 4 C -0.137 4.137 5 C 0.173 3.827 6 H 0.065 0.935 7 N -0.712 5.712 8 C -0.248 4.248 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.291 1.291 16 C 0.064 3.936 17 N -0.603 5.603 18 C 0.573 3.427 19 O -0.544 6.544 20 C -0.131 4.131 21 C -0.075 4.075 22 C -0.129 4.129 23 C -0.062 4.062 24 C -0.035 4.035 25 C 0.278 3.722 26 N -0.533 5.533 27 C 0.265 3.735 28 N -0.486 5.486 29 H 0.442 0.558 30 N -0.307 5.307 31 C -0.019 4.019 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.151 0.849 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.225 0.775 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.620 5.356 -20.422 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.090 0.910 4 C -0.176 4.176 5 C 0.060 3.940 6 H 0.083 0.917 7 N -0.352 5.352 8 C -0.378 4.378 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.737 3.263 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.062 4.062 17 N -0.336 5.336 18 C 0.362 3.638 19 O -0.424 6.424 20 C -0.134 4.134 21 C -0.094 4.094 22 C -0.147 4.147 23 C -0.083 4.083 24 C -0.038 4.038 25 C -0.001 4.001 26 N -0.260 5.260 27 C -0.034 4.034 28 N -0.204 5.204 29 H 0.288 0.712 30 N -0.137 5.137 31 C -0.040 4.040 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.222 0.778 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.168 0.832 42 H 0.155 0.845 43 H 0.151 0.849 44 H 0.241 0.759 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.554 5.474 -20.395 22.783 hybrid contribution 0.222 -1.137 -0.740 1.374 sum -8.332 4.337 -21.135 23.128 Atomic orbital electron populations 1.22135 0.94966 1.02365 1.02476 1.21507 0.94452 0.95977 0.84410 0.90985 1.22993 1.01817 0.96884 0.95859 1.21313 0.92763 0.91329 0.88573 0.91685 1.42336 1.36931 1.04947 1.51026 1.19282 1.13212 0.83172 1.22178 0.90886 1.24763 0.98370 0.97998 0.99319 1.69665 1.22095 1.34343 1.31508 0.86135 0.77533 0.85284 0.77322 1.20414 1.21751 1.21799 1.23853 0.94657 0.87632 1.00011 1.48491 1.49895 1.30800 1.04367 1.17858 0.79836 0.84655 0.81424 1.90739 1.41305 1.26866 1.83447 1.19803 0.98082 1.00819 0.94730 1.22230 0.94578 0.92547 1.00083 1.21102 1.00889 1.00060 0.92616 1.21350 0.92954 0.96330 0.97637 1.17271 0.96164 1.01373 0.88999 1.22277 0.91602 0.92530 0.93718 1.70569 1.14335 1.27540 1.13556 1.26136 0.95916 0.90655 0.90728 1.48120 1.20988 1.36015 1.15318 0.71189 1.78222 1.12977 1.24622 0.97838 1.21187 0.98613 0.94455 0.89763 0.92365 0.91853 0.91510 0.90045 0.90486 0.77811 0.93372 0.90410 0.90765 0.83211 0.84516 0.84928 0.75861 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.06 37.16 0.34 -1.89 16 2 C 0.14 2.08 3.49 -66.95 -0.23 1.84 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.14 -2.09 6.11 -24.89 -0.15 -2.24 16 5 C 0.17 3.13 3.69 -65.78 -0.24 2.89 16 6 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 7 N -0.71 -16.26 5.28 -51.35 -0.27 -16.53 16 8 C -0.25 -6.36 9.98 -15.06 -0.15 -6.51 16 9 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 11 N -0.93 -26.54 13.06 55.49 0.72 -25.81 16 12 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 C 0.06 1.05 4.71 -2.53 -0.01 1.04 16 17 N -0.60 -9.61 3.08 -164.11 -0.51 -10.12 16 18 C 0.57 9.66 7.40 -12.32 -0.09 9.57 16 19 O -0.54 -10.41 15.68 5.32 0.08 -10.33 16 20 C -0.13 -1.99 5.70 -105.01 -0.60 -2.58 16 21 C -0.08 -1.03 7.92 -39.13 -0.31 -1.34 16 22 C -0.13 -1.54 10.02 -39.69 -0.40 -1.94 16 23 C -0.06 -0.75 9.68 -39.17 -0.38 -1.13 16 24 C -0.04 -0.48 5.87 -104.95 -0.62 -1.09 16 25 C 0.28 3.63 7.77 -156.63 -1.22 2.41 16 26 N -0.53 -6.39 10.82 -12.38 -0.13 -6.52 16 27 C 0.26 1.88 13.11 -90.70 -1.19 0.69 16 28 N -0.49 -3.44 7.44 29.52 0.22 -3.22 16 29 H 0.44 1.28 8.96 -182.34 -1.63 -0.35 16 30 N -0.31 -3.56 12.42 32.10 0.40 -3.17 16 31 C -0.02 -0.28 9.23 -38.85 -0.36 -0.64 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.01 6.86 -51.93 -0.36 0.66 16 35 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 36 H 0.08 1.18 7.99 -51.93 -0.42 0.77 16 37 H 0.39 9.43 7.71 -40.82 -0.31 9.12 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 39 H 0.08 1.27 6.16 -51.93 -0.32 0.95 16 40 H 0.07 1.25 7.29 -51.93 -0.38 0.87 16 41 H 0.15 2.05 4.56 -52.49 -0.24 1.81 16 42 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.13 1.41 7.82 -52.49 -0.41 1.00 16 44 H 0.23 0.36 8.06 -52.48 -0.42 -0.06 16 45 H 0.14 2.20 7.65 -52.48 -0.40 1.80 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -33.84 375.51 -11.51 -45.36 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.96 Total: 9.61 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -5.71 Total: -1.22 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: 0.43 Total: -65.37 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.84 -11.51 -45.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989291449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.288 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds