Wall clock time and date at job start Sat Apr 11 2020 06:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.99675 * 2 1 4 4 C 1.54338 * 109.77459 * 121.16108 * 2 1 3 5 5 C 1.55160 * 103.01656 * 97.49890 * 4 2 1 6 6 H 1.09005 * 111.00165 * 277.22447 * 5 4 2 7 7 N 1.46499 * 111.00178 * 153.38290 * 5 4 2 8 8 C 1.36942 * 120.00004 * 161.34815 * 7 5 4 9 9 H 1.07993 * 120.00052 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00009 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99982 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 119.99964 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47255 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47346 * 119.99957 * 12 10 8 15 15 H 1.48497 * 109.47227 * 239.99967 * 12 10 8 16 16 C 1.54908 * 101.58384 * 35.30390 * 5 4 2 17 17 N 1.47017 * 109.88089 * 238.90235 * 2 1 3 18 18 C 1.34774 * 125.65264 * 59.56586 * 17 2 1 19 19 O 1.21550 * 119.99691 * 3.49461 * 18 17 2 20 20 C 1.47861 * 120.00252 * 183.50018 * 18 17 2 21 21 C 1.39661 * 120.08514 * 332.58391 * 20 18 17 22 22 C 1.38014 * 120.09432 * 179.69939 * 21 20 18 23 23 C 1.38164 * 120.27364 * 0.27732 * 22 21 20 24 24 C 1.39407 * 120.17221 * 359.97438 * 23 22 21 25 25 C 1.48425 * 120.05098 * 179.97438 * 24 23 22 26 26 N 1.33972 * 125.64920 * 179.69258 * 25 24 23 27 27 C 1.30683 * 109.77488 * 179.81681 * 26 25 24 28 28 N 1.34518 * 108.29501 * 0.44244 * 27 26 25 29 29 H 0.96999 * 126.74324 * 179.74960 * 28 27 26 30 30 N 1.31492 * 125.64611 * 359.97438 * 25 24 23 31 31 C 1.39097 * 119.90008 * 359.97438 * 24 23 22 32 32 H 1.08997 * 109.47423 * 179.64353 * 1 2 3 33 33 H 1.09005 * 109.47159 * 299.65077 * 1 2 3 34 34 H 1.09001 * 109.46927 * 59.64148 * 1 2 3 35 35 H 1.09001 * 110.85243 * 339.02680 * 4 2 1 36 36 H 1.08995 * 110.66710 * 215.87918 * 4 2 1 37 37 H 0.97003 * 120.00214 * 341.34596 * 7 5 4 38 38 H 0.96996 * 119.99979 * 180.02562 * 11 10 8 39 39 H 1.08999 * 110.36838 * 204.15009 * 16 5 4 40 40 H 1.09003 * 110.36386 * 81.82751 * 16 5 4 41 41 H 1.07997 * 119.95177 * 359.97438 * 21 20 18 42 42 H 1.07996 * 119.86482 * 180.24856 * 22 21 20 43 43 H 1.08002 * 119.91260 * 179.97438 * 23 22 21 44 44 H 1.08005 * 125.85320 * 180.20403 * 27 26 25 45 45 H 1.08004 * 120.13305 * 180.02562 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7515 1.2428 5 6 2.3561 -2.1697 0.6916 6 1 1.4520 -2.7778 0.6581 7 7 3.3998 -2.8276 1.4815 8 6 3.5510 -4.1872 1.4193 9 1 2.9005 -4.7745 0.7883 10 6 4.5403 -4.8105 2.1675 11 7 5.3334 -4.0946 2.9362 12 14 4.7470 -6.6650 2.0821 13 1 3.7386 -7.2331 1.1517 14 1 6.1109 -6.9891 1.5924 15 1 4.5553 -7.2472 3.4346 16 6 2.8612 -1.8466 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.7754 -0.3845 -2.4657 19 8 1.1306 0.6140 -2.7199 20 6 2.2805 -1.2377 -3.5627 21 6 3.4342 -2.0031 -3.3799 22 6 3.9023 -2.8043 -4.4016 23 6 3.2369 -2.8497 -5.6116 24 6 2.0872 -2.0863 -5.8081 25 6 1.3748 -2.1368 -7.1093 26 7 0.2618 -1.4576 -7.4170 27 6 -0.0969 -1.7290 -8.6440 28 7 0.7833 -2.6077 -9.1566 29 1 0.7683 -2.9915 -10.0473 30 7 1.7288 -2.8595 -8.1492 31 6 1.6085 -1.2772 -4.7829 32 1 -0.3634 -1.0276 -0.0064 33 1 -0.3634 0.5084 0.8931 34 1 -0.3633 0.5194 -0.8868 35 1 1.2884 -0.7950 2.0193 36 1 2.9599 -0.2827 1.6226 37 1 3.9839 -2.3001 2.0486 38 1 6.0249 -4.5301 3.4586 39 1 2.7178 -2.7049 -1.3931 40 1 3.9123 -1.5589 -0.7113 41 1 3.9584 -1.9715 -2.4362 42 1 4.7926 -3.3977 -4.2548 43 1 3.6086 -3.4784 -6.4073 44 1 -0.9552 -1.3211 -9.1571 45 1 0.7178 -0.6845 -4.9309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989291449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:54 Heat of formation + Delta-G solvation = 85.283132 kcal Electronic energy + Delta-G solvation = -28862.944781 eV Core-core repulsion = 24882.023342 eV Total energy + Delta-G solvation = -3980.921439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.08637 -41.64500 -39.78111 -38.61433 -35.96567 -34.52441 -33.44856 -33.13951 -32.56898 -31.94859 -30.76933 -29.97374 -26.94431 -26.01169 -25.20667 -24.77866 -23.74804 -22.60721 -21.71903 -21.56252 -20.18956 -19.41200 -19.22335 -18.10302 -17.54718 -16.99246 -16.97322 -16.52995 -16.40853 -16.09196 -15.88899 -15.34915 -15.25230 -14.97105 -14.80360 -14.53475 -14.51333 -14.24857 -13.93072 -13.78490 -13.28283 -13.19539 -13.05317 -12.98247 -12.79932 -12.74348 -12.39867 -12.13142 -12.07283 -11.90959 -11.70105 -11.52750 -11.42057 -11.21023 -11.08448 -11.06569 -10.83072 -10.10215 -9.68347 -9.64115 -9.01024 -7.91389 -5.20908 -0.36206 -0.00949 0.78709 1.52126 1.54034 1.60674 1.62635 1.70374 1.88828 2.04133 2.59613 2.82578 2.95572 3.28455 3.40113 3.56746 3.76044 3.82975 3.93363 3.98075 4.03460 4.09928 4.13401 4.20132 4.35862 4.41430 4.49003 4.53396 4.62807 4.72802 4.77109 4.88253 4.91490 5.01507 5.06792 5.09693 5.15098 5.24917 5.26494 5.31231 5.35248 5.40692 5.48288 5.59259 5.75146 6.21816 6.29780 6.45746 6.99555 7.05426 7.38157 8.08652 8.33545 9.31504 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.002935 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.432668 B = 9536.258690 C =11447.415331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 H 0.076 0.924 4 C -0.124 4.124 5 C 0.166 3.834 6 H 0.062 0.938 7 N -0.721 5.721 8 C -0.238 4.238 9 H 0.078 0.922 10 C -0.067 4.067 11 N -0.965 5.965 12 Si 0.965 3.035 13 H -0.266 1.266 14 H -0.294 1.294 15 H -0.298 1.298 16 C 0.079 3.921 17 N -0.601 5.601 18 C 0.571 3.429 19 O -0.572 6.572 20 C -0.146 4.146 21 C -0.081 4.081 22 C -0.121 4.121 23 C -0.056 4.056 24 C -0.039 4.039 25 C 0.256 3.744 26 N -0.578 5.578 27 C 0.282 3.718 28 N -0.470 5.470 29 H 0.461 0.539 30 N -0.327 5.327 31 C -0.028 4.028 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.378 0.622 38 H 0.251 0.749 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.148 0.852 42 H 0.163 0.837 43 H 0.150 0.850 44 H 0.278 0.722 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.437 4.635 -22.402 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.094 0.906 4 C -0.162 4.162 5 C 0.056 3.944 6 H 0.080 0.920 7 N -0.361 5.361 8 C -0.370 4.370 9 H 0.096 0.904 10 C -0.260 4.260 11 N -0.615 5.615 12 Si 0.795 3.205 13 H -0.190 1.190 14 H -0.222 1.222 15 H -0.226 1.226 16 C -0.047 4.047 17 N -0.333 5.333 18 C 0.362 3.638 19 O -0.454 6.454 20 C -0.149 4.149 21 C -0.100 4.100 22 C -0.139 4.139 23 C -0.076 4.076 24 C -0.041 4.041 25 C -0.024 4.024 26 N -0.306 5.306 27 C -0.016 4.016 28 N -0.191 5.191 29 H 0.311 0.689 30 N -0.157 5.157 31 C -0.050 4.050 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.211 0.789 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.166 0.834 42 H 0.180 0.820 43 H 0.168 0.832 44 H 0.293 0.707 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.412 4.747 -22.437 24.790 hybrid contribution 0.364 -0.868 -0.306 0.990 sum -9.048 3.878 -22.743 24.782 Atomic orbital electron populations 1.22074 0.93934 1.02246 1.02927 1.21616 0.95263 0.95982 0.83690 0.90583 1.22904 1.02325 0.94738 0.96260 1.21441 0.91357 0.92550 0.89087 0.92036 1.42426 1.37784 1.04227 1.51613 1.19608 1.12136 0.84522 1.20688 0.90367 1.25454 0.98917 1.01643 0.99998 1.69800 1.23070 1.35641 1.33035 0.85195 0.77332 0.81047 0.76913 1.19028 1.22155 1.22566 1.23553 0.94422 0.87937 0.98749 1.48495 1.49661 1.30556 1.04587 1.18149 0.79338 0.84472 0.81870 1.90714 1.42695 1.28134 1.83833 1.19730 0.99097 1.01611 0.94440 1.22220 0.94221 0.92979 1.00628 1.21378 1.01302 0.99289 0.91892 1.21566 0.92213 0.95808 0.98052 1.17458 0.96544 1.00879 0.89261 1.22226 0.92509 0.93776 0.93900 1.70533 1.14851 1.29043 1.16197 1.27085 0.96112 0.88985 0.89373 1.48057 1.19922 1.35626 1.15453 0.68877 1.78090 1.14505 1.24779 0.98354 1.21067 0.98521 0.95178 0.90190 0.92690 0.89401 0.93058 0.88585 0.90454 0.78880 0.94047 0.90203 0.91026 0.83445 0.81974 0.83183 0.70702 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.06 71.98 0.65 -3.44 16 2 C 0.14 3.97 3.49 45.35 0.16 4.12 16 3 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.12 -3.64 6.11 31.79 0.19 -3.44 16 5 C 0.17 5.92 3.69 46.38 0.17 6.09 16 6 H 0.06 2.26 8.13 -2.38 -0.02 2.24 16 7 N -0.72 -32.71 5.28 -316.37 -1.67 -34.38 16 8 C -0.24 -12.08 9.98 84.03 0.84 -11.24 16 9 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 10 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 11 N -0.97 -55.73 13.06 21.65 0.28 -55.45 16 12 Si 0.97 43.72 29.55 68.60 2.03 45.75 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 15 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 16 C 0.08 2.56 4.71 86.85 0.41 2.97 16 17 N -0.60 -19.07 3.08 -791.39 -2.44 -21.51 16 18 C 0.57 19.57 7.40 86.79 0.64 20.21 16 19 O -0.57 -22.43 15.68 -3.87 -0.06 -22.49 16 20 C -0.15 -4.47 5.70 -20.12 -0.11 -4.59 16 21 C -0.08 -2.19 7.92 22.56 0.18 -2.01 16 22 C -0.12 -2.73 10.02 22.20 0.22 -2.50 16 23 C -0.06 -1.29 9.68 22.53 0.22 -1.08 16 24 C -0.04 -1.04 5.87 -20.08 -0.12 -1.16 16 25 C 0.26 6.52 7.77 137.48 1.07 7.59 16 26 N -0.58 -13.36 10.82 -193.07 -2.09 -15.45 16 27 C 0.28 3.29 13.11 180.38 2.36 5.65 16 28 N -0.47 -5.51 7.44 -60.52 -0.45 -5.96 16 29 H 0.46 1.33 8.96 -213.10 -1.91 -0.58 16 30 N -0.33 -7.11 12.42 -52.34 -0.65 -7.76 16 31 C -0.03 -0.86 9.23 22.75 0.21 -0.65 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.05 1.54 6.86 -2.39 -0.02 1.52 16 35 H 0.10 2.55 7.83 -2.39 -0.02 2.54 16 36 H 0.08 2.30 7.99 -2.39 -0.02 2.28 16 37 H 0.38 18.51 7.71 -92.71 -0.71 17.79 16 38 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 39 H 0.08 2.57 6.16 -2.39 -0.01 2.56 16 40 H 0.07 2.40 7.29 -2.39 -0.02 2.38 16 41 H 0.15 3.98 4.56 -2.91 -0.01 3.97 16 42 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 43 H 0.15 2.90 7.82 -2.91 -0.02 2.88 16 44 H 0.28 -0.27 8.06 -2.91 -0.02 -0.29 16 45 H 0.13 4.20 7.65 -2.91 -0.02 4.18 16 Total: -1.00 -74.23 375.51 0.95 -73.28 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -1.57 Total: 30.58 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 7.56 Total: 13.39 kcal Atomic # 7 Polarization: -133.49 SS G_CDS: -7.01 Total: -140.50 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.49 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -74.23 0.95 -73.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989291449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.560 kcal (2) G-P(sol) polarization free energy of solvation -74.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds