Wall clock time and date at job start Sat Apr 11 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.00161 * 2 1 4 4 C 1.54331 * 109.87909 * 238.90352 * 2 1 3 5 5 C 1.55149 * 102.94321 * 218.38877 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48504 * 109.47306 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99661 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00078 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 109.88369 * 121.09890 * 2 1 3 18 18 C 1.34781 * 125.65005 * 298.40047 * 17 2 1 19 19 O 1.21510 * 119.99379 * 359.97438 * 18 17 2 20 20 C 1.48161 * 120.00099 * 179.97438 * 18 17 2 21 21 C 1.39234 * 119.68251 * 179.72304 * 20 18 17 22 22 C 1.38721 * 119.18412 * 179.74853 * 21 20 18 23 23 C 1.38405 * 118.55630 * 0.52098 * 22 21 20 24 24 C 1.39262 * 119.30435 * 359.74256 * 23 22 21 25 25 N 1.39814 * 119.62034 * 179.97438 * 24 23 22 26 26 C 1.35850 * 126.09875 * 179.97438 * 25 24 23 27 27 C 1.35278 * 107.60649 * 180.02562 * 26 25 24 28 28 C 1.39950 * 107.97520 * 359.97438 * 27 26 25 29 29 N 1.30818 * 108.36751 * 359.71790 * 28 27 26 30 30 N 1.31983 * 120.75691 * 359.97438 * 24 23 22 31 31 H 1.08999 * 109.47575 * 181.09658 * 1 2 3 32 32 H 1.09008 * 109.46550 * 301.09615 * 1 2 3 33 33 H 1.09003 * 109.47111 * 61.08992 * 1 2 3 34 34 H 1.09007 * 110.71733 * 100.02519 * 4 2 1 35 35 H 1.08999 * 110.71890 * 336.75990 * 4 2 1 36 36 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 37 37 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 38 38 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 39 39 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 40 40 H 1.07997 * 120.40724 * 0.02562 * 21 20 18 41 41 H 1.08001 * 120.71859 * 180.24251 * 22 21 20 42 42 H 1.08001 * 120.34865 * 179.72701 * 23 22 21 43 43 H 1.07990 * 126.19435 * 359.97438 * 26 25 24 44 44 H 1.08003 * 126.01233 * 180.02562 * 27 26 25 45 45 H 1.08004 * 125.82172 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2428 5 6 3.2875 -1.5143 -0.6926 6 1 4.1654 -0.8692 -0.6612 7 7 3.5529 -2.7197 -1.4818 8 6 4.8162 -3.2467 -1.5230 9 1 5.6169 -2.7735 -0.9740 10 6 5.0689 -4.3854 -2.2755 11 7 4.0933 -4.9618 -2.9450 12 14 6.7937 -5.0999 -2.3380 13 1 7.7030 -4.2717 -1.5056 14 1 6.7729 -6.4900 -1.8160 15 1 7.2767 -5.1055 -3.7422 16 6 2.8145 -1.8795 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8073 -0.3622 2.4657 19 8 1.1422 0.6227 2.7184 20 6 2.3735 -1.1764 3.5664 21 6 2.1442 -0.8035 4.8882 22 6 2.6748 -1.5762 5.9108 23 6 3.4261 -2.6896 5.5771 24 6 3.6216 -3.0026 4.2342 25 7 4.3799 -4.1256 3.8897 26 6 4.6523 -4.5512 2.6286 27 6 5.4108 -5.6668 2.7283 28 6 5.6104 -5.9335 4.0876 29 7 4.9997 -5.0089 4.7830 30 7 3.0991 -2.2513 3.2832 31 1 -0.3634 -1.0274 0.0197 32 1 -0.3633 0.5308 0.8801 33 1 -0.3633 0.4968 -0.8996 34 1 2.3528 -0.0460 -2.0202 35 1 1.3049 -1.4459 -1.6183 36 1 2.8339 -3.1445 -1.9753 37 1 4.2698 -5.7577 -3.4705 38 1 2.1885 -2.7715 0.7127 39 1 3.6716 -2.0340 1.3920 40 1 1.5566 0.0739 5.1145 41 1 2.5090 -1.3121 6.9448 42 1 3.8566 -3.3091 6.3500 43 1 4.3223 -4.0840 1.7126 44 1 5.7956 -6.2489 1.9038 45 1 6.1765 -6.7589 4.4933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989429504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:05 Heat of formation + Delta-G solvation = 121.251109 kcal Electronic energy + Delta-G solvation = -30130.273644 eV Core-core repulsion = 26150.911893 eV Total energy + Delta-G solvation = -3979.361751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57521 -40.54673 -39.30782 -37.40901 -34.25694 -33.70254 -33.19306 -31.45559 -31.20248 -30.27759 -29.46446 -28.43166 -25.58991 -25.00558 -24.16034 -23.77474 -22.17858 -20.92374 -20.76658 -20.25807 -19.30010 -17.96562 -17.47052 -17.17283 -16.34701 -16.08798 -15.76652 -15.60920 -15.21794 -14.62995 -14.59086 -14.10679 -13.85555 -13.60811 -13.51200 -13.33525 -13.21636 -13.13469 -12.63491 -12.51642 -12.42076 -12.29175 -12.14754 -11.71241 -11.19228 -11.10232 -10.91868 -10.83487 -10.68675 -10.57660 -10.29808 -10.19107 -10.10670 -10.02989 -9.80517 -9.54353 -9.11401 -8.98096 -8.45641 -8.25421 -7.10147 -5.87751 -3.18291 0.37887 0.72892 1.99039 2.06044 2.79447 2.89168 3.01680 3.36221 3.44035 3.45163 3.73620 3.97118 4.30099 4.47770 4.59809 4.73678 4.83323 4.95534 5.02465 5.12106 5.20576 5.22754 5.26171 5.47731 5.49921 5.57776 5.70301 5.74467 5.76206 5.84245 5.85440 5.90357 6.09867 6.12152 6.15883 6.17446 6.28948 6.35495 6.47087 6.53889 6.60006 6.70192 6.85471 7.09304 7.21911 7.61397 7.69557 7.75264 8.21258 8.29850 9.41907 9.95846 10.31265 11.34147 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007816 B = 0.005537 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3581.589788 B = 5055.564711 C = 8329.488733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.168 3.832 6 H 0.066 0.934 7 N -0.710 5.710 8 C -0.247 4.247 9 H 0.072 0.928 10 C -0.005 4.005 11 N -0.928 5.928 12 Si 0.902 3.098 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.292 1.292 16 C 0.076 3.924 17 N -0.585 5.585 18 C 0.581 3.419 19 O -0.542 6.542 20 C 0.122 3.878 21 C -0.132 4.132 22 C -0.059 4.059 23 C -0.150 4.150 24 C 0.375 3.625 25 N -0.333 5.333 26 C 0.091 3.909 27 C -0.261 4.261 28 C 0.067 3.933 29 N -0.297 5.297 30 N -0.470 5.470 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.194 0.806 44 H 0.159 0.841 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.920 4.783 14.679 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 H 0.093 0.907 4 C -0.177 4.177 5 C 0.055 3.945 6 H 0.084 0.916 7 N -0.350 5.350 8 C -0.378 4.378 9 H 0.090 0.910 10 C -0.202 4.202 11 N -0.575 5.575 12 Si 0.733 3.267 13 H -0.204 1.204 14 H -0.216 1.216 15 H -0.219 1.219 16 C -0.049 4.049 17 N -0.316 5.316 18 C 0.367 3.633 19 O -0.421 6.421 20 C -0.017 4.017 21 C -0.153 4.153 22 C -0.085 4.085 23 C -0.172 4.172 24 C 0.146 3.854 25 N -0.111 5.111 26 C -0.049 4.049 27 C -0.289 4.289 28 C -0.121 4.121 29 N -0.115 5.115 30 N -0.186 5.186 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.221 0.779 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.171 0.829 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.211 0.789 44 H 0.177 0.823 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.270 5.544 15.110 16.424 hybrid contribution 0.849 -0.969 -0.319 1.328 sum -2.421 4.575 14.791 15.671 Atomic orbital electron populations 1.22130 0.94957 1.02296 1.02476 1.21614 0.94372 0.96177 0.84529 0.90727 1.23065 0.99384 0.99699 0.95578 1.21392 0.94552 0.89515 0.89037 0.91611 1.42304 1.09595 1.27717 1.55394 1.19272 0.86768 1.06911 1.24818 0.90994 1.24720 0.97375 0.98375 0.99702 1.69661 1.30682 1.22387 1.34766 0.86203 0.84137 0.78968 0.77427 1.20396 1.21605 1.21871 1.23831 0.95562 0.86692 0.98842 1.48475 1.50345 1.28776 1.04007 1.17402 0.80665 0.83906 0.81321 1.90749 1.40863 1.27119 1.83325 1.20891 0.95517 0.91746 0.93589 1.22088 1.00269 1.01334 0.91637 1.21510 0.93939 0.92625 1.00381 1.21807 1.00838 0.99145 0.95424 1.17720 0.91899 0.86320 0.89510 1.45778 1.39915 1.20047 1.05356 1.23333 0.96558 0.95767 0.89246 1.21769 1.08513 1.01276 0.97372 1.24146 0.97614 0.97422 0.92958 1.77342 1.15162 1.03320 1.15712 1.67199 1.10135 1.05668 1.35581 0.92498 0.91590 0.91717 0.90291 0.90360 0.77873 0.93393 0.91547 0.88752 0.82865 0.83201 0.83121 0.78876 0.82338 0.79162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.09 37.16 0.34 -1.82 16 2 C 0.14 2.00 3.46 -66.95 -0.23 1.77 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 4 C -0.14 -2.13 6.12 -24.90 -0.15 -2.28 16 5 C 0.17 3.08 3.71 -65.78 -0.24 2.83 16 6 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 7 N -0.71 -16.09 5.24 -51.35 -0.27 -16.36 16 8 C -0.25 -6.22 9.96 -15.06 -0.15 -6.37 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 11 N -0.93 -26.13 13.06 55.49 0.72 -25.40 16 12 Si 0.90 20.91 29.55 -169.99 -5.02 15.89 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 C 0.08 1.32 5.53 -2.53 -0.01 1.30 16 17 N -0.59 -9.41 3.06 -164.00 -0.50 -9.92 16 18 C 0.58 9.43 7.63 -12.18 -0.09 9.34 16 19 O -0.54 -9.47 15.36 5.36 0.08 -9.38 16 20 C 0.12 1.79 6.72 -83.03 -0.56 1.23 16 21 C -0.13 -1.53 9.63 -39.03 -0.38 -1.90 16 22 C -0.06 -0.56 10.16 -39.34 -0.40 -0.96 16 23 C -0.15 -1.74 9.70 -39.14 -0.38 -2.12 16 24 C 0.38 5.52 7.55 -154.53 -1.17 4.35 16 25 N -0.33 -5.16 3.81 -12.10 -0.05 -5.21 16 26 C 0.09 1.48 11.10 -16.83 -0.19 1.29 16 27 C -0.26 -3.80 10.80 -40.00 -0.43 -4.23 16 28 C 0.07 0.85 12.02 -17.34 -0.21 0.64 16 29 N -0.30 -4.28 11.83 30.64 0.36 -3.92 16 30 N -0.47 -7.26 6.09 -8.85 -0.05 -7.32 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.95 6.90 -51.92 -0.36 0.59 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 35 H 0.08 1.23 7.71 -51.93 -0.40 0.83 16 36 H 0.39 9.42 7.76 -40.82 -0.32 9.10 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.69 5.06 -51.93 -0.26 1.43 16 40 H 0.15 1.58 7.63 -52.49 -0.40 1.18 16 41 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.15 1.58 7.68 -52.49 -0.40 1.18 16 43 H 0.19 3.38 7.12 -52.49 -0.37 3.01 16 44 H 0.16 2.17 8.06 -52.48 -0.42 1.75 16 45 H 0.19 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -30.07 377.01 -9.26 -39.33 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -5.86 Total: 13.75 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -4.35 Total: 2.86 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: 0.22 Total: -68.12 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.07 -9.26 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989429504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.583 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds