Wall clock time and date at job start Sat Apr 11 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.87569 * 2 1 4 4 C 1.54316 * 110.01465 * 121.10451 * 2 1 3 5 5 C 1.55160 * 102.94268 * 141.68173 * 4 2 1 6 6 H 1.08999 * 111.00447 * 82.61518 * 5 4 2 7 7 N 1.46502 * 111.00224 * 206.42392 * 5 4 2 8 8 C 1.36944 * 120.00018 * 204.99552 * 7 5 4 9 9 H 1.07993 * 119.99709 * 0.02562 * 8 7 5 10 10 C 1.38804 * 119.99988 * 180.02562 * 8 7 5 11 11 N 1.31627 * 120.00315 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00073 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46796 * 359.97438 * 12 10 8 14 14 H 1.48488 * 109.47309 * 119.99965 * 12 10 8 15 15 H 1.48500 * 109.47021 * 240.00029 * 12 10 8 16 16 C 1.54910 * 101.58122 * 324.49825 * 5 4 2 17 17 N 1.47026 * 109.87945 * 238.99346 * 2 1 3 18 18 C 1.34771 * 125.65100 * 61.21790 * 17 2 1 19 19 O 1.21511 * 120.00078 * 0.02562 * 18 17 2 20 20 C 1.48167 * 120.00099 * 180.02562 * 18 17 2 21 21 C 1.39232 * 119.68393 * 179.72503 * 20 18 17 22 22 C 1.38714 * 119.18496 * 179.75024 * 21 20 18 23 23 C 1.38416 * 118.55890 * 0.51332 * 22 21 20 24 24 C 1.39260 * 119.29470 * 359.75161 * 23 22 21 25 25 N 1.39822 * 119.61698 * 179.97438 * 24 23 22 26 26 C 1.35846 * 126.10367 * 179.69225 * 25 24 23 27 27 C 1.35282 * 107.60896 * 179.83884 * 26 25 24 28 28 C 1.39955 * 107.97177 * 0.42829 * 27 26 25 29 29 N 1.30813 * 108.37019 * 359.73269 * 28 27 26 30 30 N 1.31976 * 120.76520 * 359.97438 * 24 23 22 31 31 H 1.09000 * 109.46733 * 179.55744 * 1 2 3 32 32 H 1.09005 * 109.46849 * 299.55629 * 1 2 3 33 33 H 1.08994 * 109.46873 * 59.55402 * 1 2 3 34 34 H 1.08997 * 110.72381 * 260.04431 * 4 2 1 35 35 H 1.09002 * 110.72355 * 23.31836 * 4 2 1 36 36 H 0.97005 * 120.00220 * 25.00616 * 7 5 4 37 37 H 0.97000 * 120.00042 * 179.97438 * 11 10 8 38 38 H 1.09001 * 110.36852 * 278.17238 * 16 5 4 39 39 H 1.08998 * 110.36449 * 155.84885 * 16 5 4 40 40 H 1.07996 * 120.41089 * 0.02960 * 21 20 18 41 41 H 1.08001 * 120.72470 * 180.27008 * 22 21 20 42 42 H 1.07994 * 120.35066 * 179.76987 * 23 22 21 43 43 H 1.07998 * 126.19037 * 0.02562 * 26 25 24 44 44 H 1.08004 * 126.00871 * 180.15465 * 27 26 25 45 45 H 1.07997 * 125.81484 * 179.75037 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7491 1.2415 5 6 3.2919 -1.5108 0.6890 6 1 4.1684 -0.8636 0.6569 7 7 3.5611 -2.7160 1.4773 8 6 4.8256 -3.2402 1.5164 9 1 5.6244 -2.7650 0.9665 10 6 5.0806 -4.3824 2.2628 11 7 4.1069 -4.9619 2.9326 12 14 6.8057 -5.0972 2.3167 13 1 7.7121 -4.2659 1.4845 14 1 7.2928 -5.1093 3.7193 15 1 6.7832 -6.4849 1.7885 16 6 2.8177 -1.8761 -0.7397 17 7 2.0300 -0.7123 -1.1851 18 6 1.8012 -0.3625 -2.4663 19 8 1.1300 0.6187 -2.7177 20 6 2.3682 -1.1744 -3.5685 21 6 2.1229 -0.8103 -4.8898 22 6 2.6631 -1.5747 -5.9135 23 6 3.4216 -2.6840 -5.5815 24 6 3.6231 -2.9948 -4.2391 25 7 4.3877 -4.1141 -3.8962 26 6 4.6717 -4.5338 -2.6358 27 6 5.4304 -5.6493 -2.7371 28 6 5.6257 -5.9166 -4.0970 29 7 5.0027 -4.9993 -4.7911 30 7 3.1007 -2.2451 -3.2868 31 1 -0.3633 -1.0277 -0.0079 32 1 -0.3633 0.5070 0.8940 33 1 -0.3633 0.5207 -0.8859 34 1 2.3558 -0.0454 2.0189 35 1 1.3105 -1.4473 1.6177 36 1 2.8437 -3.1427 1.9714 37 1 4.2851 -5.7603 3.4539 38 1 2.1937 -2.7696 -0.7154 39 1 3.6742 -2.0283 -1.3964 40 1 1.5233 0.0592 -5.1149 41 1 2.4923 -1.3125 -6.9472 42 1 3.8528 -3.3017 -6.3554 43 1 4.3477 -4.0639 -1.7189 44 1 5.8206 -6.2287 -1.9135 45 1 6.1937 -6.7400 -4.5039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989429505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:07 Heat of formation + Delta-G solvation = 104.669067 kcal Electronic energy + Delta-G solvation = -30133.257815 eV Core-core repulsion = 26153.177013 eV Total energy + Delta-G solvation = -3980.080802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.64957 -41.70667 -40.48395 -38.77283 -36.00343 -34.72463 -34.24698 -33.22027 -32.41398 -31.37898 -30.53349 -30.07084 -26.86133 -26.24895 -25.53412 -25.17593 -23.34131 -22.10673 -21.95499 -21.64392 -20.48392 -19.27262 -19.09384 -18.47484 -17.55358 -17.17657 -16.83953 -16.76638 -16.66836 -16.13913 -15.71229 -15.49607 -15.35469 -14.83460 -14.73469 -14.60118 -14.44710 -14.39603 -13.98552 -13.71448 -13.69317 -13.45532 -13.30329 -13.04762 -12.88626 -12.80459 -12.39692 -12.12251 -12.03660 -11.97067 -11.76097 -11.57507 -11.50920 -11.42175 -11.09919 -11.04163 -10.53230 -10.25050 -9.74894 -9.36816 -9.01048 -7.91232 -5.20772 -0.63585 -0.25186 0.93304 1.01134 1.50665 1.52921 1.61411 1.62660 1.78735 1.80345 2.58399 2.67717 2.84970 3.32412 3.40373 3.46791 3.75608 3.83998 3.86381 3.86719 3.98372 4.05920 4.14943 4.17282 4.29639 4.33271 4.47007 4.49163 4.51190 4.68825 4.72607 4.81949 4.88099 4.93974 4.98028 5.05775 5.07903 5.17570 5.22006 5.27101 5.36407 5.40927 5.56403 5.57123 5.95122 6.16961 6.28876 6.38961 6.66591 6.96830 7.37580 8.07119 8.33263 9.31690 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007817 B = 0.005543 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3581.294463 B = 5050.007202 C = 8326.918495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 H 0.084 0.916 4 C -0.126 4.126 5 C 0.162 3.838 6 H 0.062 0.938 7 N -0.719 5.719 8 C -0.237 4.237 9 H 0.074 0.926 10 C -0.060 4.060 11 N -0.964 5.964 12 Si 0.960 3.040 13 H -0.268 1.268 14 H -0.299 1.299 15 H -0.288 1.288 16 C 0.100 3.900 17 N -0.589 5.589 18 C 0.579 3.421 19 O -0.556 6.556 20 C 0.092 3.908 21 C -0.121 4.121 22 C -0.036 4.036 23 C -0.141 4.141 24 C 0.346 3.654 25 N -0.339 5.339 26 C 0.064 3.936 27 C -0.265 4.265 28 C 0.078 3.922 29 N -0.303 5.303 30 N -0.494 5.494 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.377 0.623 37 H 0.251 0.749 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.170 0.830 41 H 0.200 0.800 42 H 0.166 0.834 43 H 0.170 0.830 44 H 0.163 0.837 45 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.589 5.501 -17.196 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 H 0.102 0.898 4 C -0.164 4.164 5 C 0.051 3.949 6 H 0.080 0.920 7 N -0.358 5.358 8 C -0.368 4.368 9 H 0.092 0.908 10 C -0.253 4.253 11 N -0.614 5.614 12 Si 0.790 3.210 13 H -0.193 1.193 14 H -0.226 1.226 15 H -0.215 1.215 16 C -0.026 4.026 17 N -0.320 5.320 18 C 0.366 3.634 19 O -0.436 6.436 20 C -0.046 4.046 21 C -0.142 4.142 22 C -0.062 4.062 23 C -0.164 4.164 24 C 0.117 3.883 25 N -0.118 5.118 26 C -0.077 4.077 27 C -0.293 4.293 28 C -0.111 4.111 29 N -0.122 5.122 30 N -0.210 5.210 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.210 0.790 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.187 0.813 41 H 0.217 0.783 42 H 0.184 0.816 43 H 0.187 0.813 44 H 0.181 0.819 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.960 6.314 -17.662 18.989 hybrid contribution 0.712 -1.116 0.992 1.655 sum -2.248 5.198 -16.670 17.605 Atomic orbital electron populations 1.22055 0.93735 1.01939 1.03246 1.21725 0.95319 0.96242 0.83532 0.89840 1.22960 0.97605 0.99549 0.96313 1.21515 0.95797 0.88272 0.89332 0.92040 1.42379 1.08520 1.28903 1.55956 1.19531 0.87659 1.06226 1.23427 0.90846 1.25372 1.00456 0.99116 1.00357 1.69805 1.32481 1.22673 1.36452 0.85276 0.80616 0.78313 0.76835 1.19280 1.22647 1.21522 1.23331 0.94964 0.86455 0.97872 1.48507 1.50252 1.28569 1.04702 1.17704 0.80293 0.83833 0.81537 1.90725 1.41297 1.27964 1.83583 1.20861 0.97043 0.92349 0.94384 1.22362 0.99500 1.01677 0.90680 1.22015 0.91421 0.90650 1.02074 1.22095 1.00370 0.99661 0.94230 1.18086 0.92849 0.86704 0.90705 1.45925 1.40175 1.20714 1.04977 1.23144 0.98197 0.97017 0.89324 1.21956 1.08004 1.00644 0.98707 1.24780 0.96721 0.97781 0.91791 1.77296 1.15394 1.03683 1.15838 1.66990 1.10932 1.06285 1.36811 0.93334 0.89322 0.92426 0.88683 0.90647 0.79032 0.94039 0.93640 0.89480 0.81277 0.78283 0.81619 0.81314 0.81930 0.74921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.11 71.98 0.66 -3.29 16 2 C 0.13 3.88 3.46 45.34 0.16 4.04 16 3 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 4 C -0.13 -3.84 6.13 31.78 0.19 -3.64 16 5 C 0.16 6.09 3.71 46.38 0.17 6.26 16 6 H 0.06 2.38 8.09 -2.39 -0.02 2.36 16 7 N -0.72 -33.61 5.24 -316.37 -1.66 -35.27 16 8 C -0.24 -12.21 9.96 84.03 0.84 -11.37 16 9 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 10 C -0.06 -3.23 5.50 84.86 0.47 -2.77 16 11 N -0.96 -55.86 13.06 21.65 0.28 -55.58 16 12 Si 0.96 43.71 29.55 68.60 2.03 45.73 16 13 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 14 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 15 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 16 C 0.10 3.60 5.54 86.86 0.48 4.08 16 17 N -0.59 -19.22 3.07 -791.07 -2.43 -21.64 16 18 C 0.58 18.79 7.63 86.88 0.66 19.45 16 19 O -0.56 -19.04 15.33 -3.75 -0.06 -19.10 16 20 C 0.09 2.68 6.72 41.88 0.28 2.96 16 21 C -0.12 -2.53 9.63 22.62 0.22 -2.31 16 22 C -0.04 -0.56 10.16 22.43 0.23 -0.33 16 23 C -0.14 -2.98 9.70 22.56 0.22 -2.76 16 24 C 0.35 10.10 7.55 132.94 1.00 11.11 16 25 N -0.34 -10.59 3.81 -192.18 -0.73 -11.32 16 26 C 0.06 2.16 11.10 83.39 0.93 3.09 16 27 C -0.27 -7.69 10.80 22.00 0.24 -7.46 16 28 C 0.08 1.83 12.02 85.26 1.02 2.86 16 29 N -0.30 -8.36 11.83 -56.98 -0.67 -9.04 16 30 N -0.49 -15.60 6.09 -181.91 -1.11 -16.70 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.06 1.62 6.85 -2.39 -0.02 1.60 16 34 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.07 2.37 7.72 -2.39 -0.02 2.35 16 36 H 0.38 19.05 7.76 -92.70 -0.72 18.33 16 37 H 0.25 14.20 8.31 -92.71 -0.77 13.42 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.09 3.31 5.04 -2.39 -0.01 3.30 16 40 H 0.17 3.00 7.63 -2.91 -0.02 2.98 16 41 H 0.20 1.14 8.06 -2.91 -0.02 1.11 16 42 H 0.17 2.98 7.68 -2.91 -0.02 2.96 16 43 H 0.17 6.45 7.10 -2.91 -0.02 6.43 16 44 H 0.16 4.46 8.06 -2.91 -0.02 4.44 16 45 H 0.23 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -67.15 376.91 3.73 -63.42 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: 0.31 Total: 39.58 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 7.76 Total: 19.91 kcal Atomic # 7 Polarization: -143.24 SS G_CDS: -6.32 Total: -149.56 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.06 Total: -19.10 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -67.15 3.73 -63.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989429505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.092 kcal (2) G-P(sol) polarization free energy of solvation -67.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds