Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.87302 * 2 1 4 4 C 1.54320 * 109.88217 * 121.18071 * 2 1 3 5 5 C 1.55156 * 102.94554 * 141.60909 * 4 2 1 6 6 H 1.09004 * 111.03724 * 82.57891 * 5 4 2 7 7 N 1.46494 * 111.00702 * 206.42357 * 5 4 2 8 8 C 1.36942 * 120.00256 * 198.64819 * 7 5 4 9 9 H 1.08001 * 119.99322 * 0.02562 * 8 7 5 10 10 C 1.38811 * 120.00117 * 179.97438 * 8 7 5 11 11 N 1.31620 * 119.99794 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99900 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.46754 * 269.99416 * 12 10 8 14 14 H 1.48500 * 109.47602 * 29.99308 * 12 10 8 15 15 H 1.48501 * 109.47153 * 149.99869 * 12 10 8 16 16 C 1.54918 * 101.57958 * 324.49908 * 5 4 2 17 17 N 1.47020 * 109.88162 * 238.98591 * 2 1 3 18 18 C 1.34784 * 125.64822 * 61.68071 * 17 2 1 19 19 O 1.21554 * 120.00043 * 173.69530 * 18 17 2 20 20 C 1.47855 * 119.99720 * 353.69186 * 18 17 2 21 21 C 1.39615 * 120.11578 * 16.77781 * 20 18 17 22 22 C 1.37971 * 119.98959 * 179.97438 * 21 20 18 23 23 C 1.38267 * 120.21807 * 359.97438 * 22 21 20 24 24 C 1.38917 * 120.22358 * 359.97438 * 23 22 21 25 25 N 1.40230 * 119.99229 * 180.02562 * 24 23 22 26 26 C 1.34717 * 126.84051 * 4.70478 * 25 24 23 27 27 N 1.30849 * 108.03326 * 179.84009 * 26 25 24 28 28 C 1.33265 * 109.83828 * 0.43871 * 27 26 25 29 29 N 1.30743 * 109.00141 * 359.72963 * 28 27 26 30 30 C 1.38591 * 120.01131 * 359.78534 * 24 23 22 31 31 H 1.08998 * 109.47056 * 197.28447 * 1 2 3 32 32 H 1.09000 * 109.47397 * 317.28409 * 1 2 3 33 33 H 1.09005 * 109.47516 * 77.28517 * 1 2 3 34 34 H 1.08997 * 110.72279 * 23.24490 * 4 2 1 35 35 H 1.09004 * 110.71826 * 259.97255 * 4 2 1 36 36 H 0.97001 * 120.00022 * 18.65163 * 7 5 4 37 37 H 0.96994 * 119.99794 * 180.02562 * 11 10 8 38 38 H 1.09000 * 110.36301 * 155.85058 * 16 5 4 39 39 H 1.09003 * 110.36285 * 278.05882 * 16 5 4 40 40 H 1.08001 * 120.00305 * 359.95033 * 21 20 18 41 41 H 1.08008 * 119.89481 * 180.02562 * 22 21 20 42 42 H 1.08003 * 119.88752 * 180.02562 * 23 22 21 43 43 H 1.08002 * 125.98711 * 359.96384 * 26 25 24 44 44 H 1.08009 * 125.49727 * 179.74562 * 28 27 26 45 45 H 1.08000 * 120.10823 * 180.23834 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7514 1.2416 5 6 3.2875 -1.5153 0.6902 6 1 4.1658 -0.8704 0.6590 7 7 3.5531 -2.7217 1.4776 8 6 4.7817 -3.3233 1.4156 9 1 5.5550 -2.9080 0.7863 10 6 5.0335 -4.4662 2.1621 11 7 6.2142 -5.0446 2.1020 12 14 3.6960 -5.1839 3.2509 13 1 3.7835 -4.5807 4.6051 14 1 2.3656 -4.8870 2.6618 15 1 3.8758 -6.6546 3.3516 16 6 2.8144 -1.8784 -0.7396 17 7 2.0300 -0.7124 -1.1849 18 6 1.8085 -0.3577 -2.4663 19 8 2.3655 -0.9543 -3.3670 20 6 0.8879 0.7570 -2.7762 21 6 0.5218 1.6615 -1.7776 22 6 -0.3369 2.7011 -2.0698 23 6 -0.8372 2.8516 -3.3500 24 6 -0.4780 1.9575 -4.3507 25 7 -0.9878 2.1150 -5.6475 26 6 -1.7586 3.1251 -6.0952 27 7 -2.0194 2.9063 -7.3587 28 6 -1.4444 1.7692 -7.7488 29 7 -0.8016 1.2480 -6.7366 30 6 0.3879 0.9128 -4.0687 31 1 -0.3633 -0.9812 0.3053 32 1 -0.3634 0.7550 0.6971 33 1 -0.3634 0.2262 -1.0025 34 1 1.3051 -1.4483 1.6161 35 1 2.3529 -0.0489 2.0200 36 1 2.8586 -3.0945 2.0430 37 1 6.3900 -5.8434 2.6234 38 1 3.6716 -2.0319 -1.3952 39 1 2.1901 -2.7716 -0.7171 40 1 0.9106 1.5472 -0.7765 41 1 -0.6188 3.4001 -1.2962 42 1 -1.5087 3.6675 -3.5729 43 1 -2.0998 3.9689 -5.5138 44 1 -1.5002 1.3464 -8.7412 45 1 0.6712 0.2190 -4.8465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989430263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = 152.942081 kcal Electronic energy + Delta-G solvation = -28918.458292 eV Core-core repulsion = 24940.470765 eV Total energy + Delta-G solvation = -3977.987527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.72205 -41.05682 -39.00918 -37.66809 -35.25605 -34.26085 -32.25920 -31.80755 -31.61360 -31.28283 -30.18958 -28.61653 -26.15094 -24.68109 -24.44181 -23.38395 -22.52980 -21.66805 -21.57865 -20.54152 -19.71316 -18.57540 -17.75033 -17.23005 -16.49872 -16.25771 -16.17995 -15.72162 -15.41361 -14.83130 -14.82597 -14.61304 -14.45663 -14.12233 -13.86035 -13.67971 -13.38074 -13.19980 -12.85616 -12.69580 -12.60575 -12.44337 -12.17190 -12.01081 -11.71724 -11.47273 -11.28259 -10.96732 -10.90161 -10.75319 -10.53094 -10.50465 -10.30709 -10.14296 -9.95584 -9.68852 -9.51280 -9.10418 -8.72589 -8.54256 -7.44387 -5.86945 -3.25930 0.16667 0.57256 1.50770 1.72890 2.47741 2.66943 2.91358 3.29686 3.31456 3.38896 3.45598 3.78428 3.93542 4.17750 4.32635 4.38423 4.47665 4.49290 4.55563 4.60483 4.73615 4.83742 4.98328 5.04345 5.17154 5.32129 5.35140 5.41092 5.41270 5.53247 5.60952 5.69781 5.79296 5.81641 5.83159 5.89941 5.93899 5.96494 6.03052 6.08364 6.17350 6.36387 6.46233 6.53886 6.67610 7.55675 7.56000 7.86678 8.14620 8.31208 9.07233 9.78822 9.95863 11.30591 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024987 B = 0.002266 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.292929 B =12351.228380 C =13003.825268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.120 3.880 3 H 0.087 0.913 4 C -0.139 4.139 5 C 0.177 3.823 6 H 0.075 0.925 7 N -0.735 5.735 8 C -0.255 4.255 9 H 0.093 0.907 10 C 0.010 3.990 11 N -0.927 5.927 12 Si 0.885 3.115 13 H -0.283 1.283 14 H -0.277 1.277 15 H -0.290 1.290 16 C 0.082 3.918 17 N -0.602 5.602 18 C 0.568 3.432 19 O -0.531 6.531 20 C -0.109 4.109 21 C -0.105 4.105 22 C -0.111 4.111 23 C -0.108 4.108 24 C 0.129 3.871 25 N -0.327 5.327 26 C 0.258 3.742 27 N -0.538 5.538 28 C 0.204 3.796 29 N -0.308 5.308 30 C -0.051 4.051 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.364 0.636 37 H 0.261 0.739 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.169 0.831 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.223 0.777 44 H 0.224 0.776 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.389 20.890 -8.473 29.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.016 3.984 3 H 0.105 0.895 4 C -0.178 4.178 5 C 0.066 3.934 6 H 0.092 0.908 7 N -0.376 5.376 8 C -0.384 4.384 9 H 0.111 0.889 10 C -0.187 4.187 11 N -0.574 5.574 12 Si 0.715 3.285 13 H -0.209 1.209 14 H -0.203 1.203 15 H -0.216 1.216 16 C -0.042 4.042 17 N -0.336 5.336 18 C 0.356 3.644 19 O -0.408 6.408 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.130 4.130 23 C -0.129 4.129 24 C 0.037 3.963 25 N -0.111 5.111 26 C -0.037 4.037 27 N -0.264 5.264 28 C -0.098 4.098 29 N -0.133 5.133 30 C -0.072 4.072 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.198 0.802 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.186 0.814 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.239 0.761 44 H 0.240 0.760 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.605 20.003 -9.328 28.866 hybrid contribution -1.032 -0.545 0.825 1.429 sum -19.636 19.457 -8.503 28.922 Atomic orbital electron populations 1.22911 0.94866 1.03405 1.03193 1.21971 0.94220 0.96148 0.86055 0.89534 1.23079 0.99214 0.99800 0.95663 1.21280 0.94809 0.88880 0.88462 0.90753 1.42638 1.13725 1.29169 1.52116 1.19067 0.88918 1.06877 1.23546 0.88933 1.24699 0.96448 0.97762 0.99788 1.69699 1.21009 1.22148 1.44528 0.86556 0.81924 0.78855 0.81172 1.20929 1.20302 1.21613 1.23409 0.95186 0.86823 0.98828 1.48454 1.51950 1.29122 1.04038 1.17758 0.81646 0.83217 0.81745 1.90817 1.49997 1.54987 1.45010 1.19865 1.00158 0.97584 0.93726 1.22855 0.95615 0.92471 1.01343 1.20954 0.97948 0.98376 0.95726 1.20986 1.01007 0.98572 0.92374 1.17364 0.99356 0.98754 0.80841 1.47734 1.37383 1.17630 1.08343 1.26183 0.91826 0.93871 0.91843 1.70634 1.27103 1.18421 1.10256 1.26217 0.93302 0.90668 0.99605 1.78258 1.25091 1.15644 0.94354 1.20993 0.93411 0.96072 0.96700 0.91554 0.90900 0.90573 0.90239 0.89651 0.80210 0.92853 0.90236 0.91280 0.81397 0.83969 0.84738 0.76113 0.76001 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 7.79 37.16 0.29 -1.26 16 2 C 0.12 1.25 2.75 -66.96 -0.18 1.07 16 3 H 0.09 0.71 6.18 -51.93 -0.32 0.39 16 4 C -0.14 -1.69 6.10 -24.90 -0.15 -1.85 16 5 C 0.18 3.05 3.69 -65.78 -0.24 2.81 16 6 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 7 N -0.73 -15.98 5.08 -51.35 -0.26 -16.24 16 8 C -0.25 -6.83 10.47 -15.06 -0.16 -6.99 16 9 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 10 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 11 N -0.93 -28.38 13.97 55.49 0.78 -27.60 16 12 Si 0.88 21.12 27.74 -169.99 -4.71 16.40 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 C 0.08 1.44 6.63 -2.53 -0.02 1.42 16 17 N -0.60 -8.68 3.06 -164.12 -0.50 -9.18 16 18 C 0.57 8.85 7.62 -12.32 -0.09 8.76 16 19 O -0.53 -10.49 16.69 5.32 0.09 -10.40 16 20 C -0.11 -1.30 5.06 -104.99 -0.53 -1.83 16 21 C -0.10 -0.85 6.23 -39.17 -0.24 -1.10 16 22 C -0.11 -0.64 10.02 -39.67 -0.40 -1.04 16 23 C -0.11 -0.67 9.47 -39.32 -0.37 -1.04 16 24 C 0.13 1.25 6.68 -83.63 -0.56 0.69 16 25 N -0.33 -3.32 3.82 -11.84 -0.05 -3.36 16 26 C 0.26 2.01 11.97 -90.38 -1.08 0.93 16 27 N -0.54 -5.21 11.19 -15.75 -0.18 -5.39 16 28 C 0.20 1.95 13.03 -91.77 -1.20 0.76 16 29 N -0.31 -3.66 12.06 29.30 0.35 -3.31 16 30 C -0.05 -0.62 9.22 -38.99 -0.36 -0.98 16 31 H 0.07 0.63 7.70 -51.93 -0.40 0.23 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.67 4.27 -51.93 -0.22 0.45 16 34 H 0.08 0.97 7.43 -51.93 -0.39 0.58 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.36 7.70 5.57 -40.82 -0.23 7.47 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.08 1.58 7.98 -51.93 -0.41 1.16 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.17 1.17 2.59 -52.49 -0.14 1.03 16 41 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 42 H 0.13 0.37 6.81 -52.48 -0.36 0.01 16 43 H 0.22 0.62 7.12 -52.49 -0.37 0.25 16 44 H 0.22 1.27 8.06 -52.48 -0.42 0.85 16 45 H 0.15 2.16 7.43 -52.49 -0.39 1.77 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -36.17 364.69 -9.74 -45.91 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.35 Total: 7.14 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -5.39 Total: 0.53 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: 0.14 Total: -65.08 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.40 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.17 -9.74 -45.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989430263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.852 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds