Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.41667 * 2 1 4 4 C 1.54913 * 110.36547 * 237.70485 * 2 1 3 5 5 C 1.55399 * 101.66824 * 204.23760 * 4 2 1 6 6 H 1.09003 * 110.69779 * 277.05405 * 5 4 2 7 7 N 1.46501 * 110.85569 * 153.69675 * 5 4 2 8 8 C 1.36943 * 119.99829 * 160.08539 * 7 5 4 9 9 H 1.08001 * 119.99671 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99812 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99801 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99952 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47066 * 89.99766 * 12 10 8 14 14 H 1.48489 * 109.47198 * 210.00268 * 12 10 8 15 15 H 1.48506 * 109.47069 * 330.00284 * 12 10 8 16 16 C 1.54335 * 102.82795 * 35.33725 * 5 4 2 17 17 N 1.47030 * 107.39720 * 337.97920 * 16 5 4 18 18 C 1.34773 * 125.64210 * 178.90171 * 17 16 5 19 19 O 1.21547 * 119.99844 * 174.62648 * 18 17 16 20 20 C 1.47859 * 120.00180 * 354.61851 * 18 17 16 21 21 C 1.39623 * 120.10895 * 188.01768 * 20 18 17 22 22 C 1.37982 * 119.98267 * 179.97438 * 21 20 18 23 23 C 1.38269 * 120.21903 * 0.02562 * 22 21 20 24 24 C 1.38916 * 120.22350 * 0.02562 * 23 22 21 25 25 N 1.40221 * 119.98949 * 179.97438 * 24 23 22 26 26 C 1.34725 * 126.84719 * 4.70496 * 25 24 23 27 27 N 1.30849 * 108.03290 * 179.87440 * 26 25 24 28 28 C 1.33257 * 109.84394 * 0.40401 * 27 26 25 29 29 N 1.30739 * 109.00204 * 359.75330 * 28 27 26 30 30 C 1.38593 * 120.01075 * 359.69908 * 24 23 22 31 31 H 1.08993 * 109.47237 * 299.16119 * 1 2 3 32 32 H 1.09004 * 109.47051 * 59.16111 * 1 2 3 33 33 H 1.09002 * 109.47133 * 179.15524 * 1 2 3 34 34 H 1.09008 * 111.00517 * 322.22648 * 4 2 1 35 35 H 1.09002 * 111.00662 * 86.07772 * 4 2 1 36 36 H 0.96998 * 120.00216 * 340.08985 * 7 5 4 37 37 H 0.97006 * 119.99478 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.88169 * 218.48519 * 16 5 4 39 39 H 1.08994 * 109.88079 * 97.47032 * 16 5 4 40 40 H 1.07996 * 120.01159 * 359.95641 * 21 20 18 41 41 H 1.08001 * 119.88802 * 179.97438 * 22 21 20 42 42 H 1.07995 * 119.88369 * 179.97438 * 23 22 21 43 43 H 1.07998 * 125.97638 * 0.02562 * 26 25 24 44 44 H 1.08002 * 125.49562 * 179.74893 * 28 27 26 45 45 H 1.08004 * 120.10662 * 180.27402 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7759 -1.2276 5 6 3.4795 -1.2034 -0.7347 6 1 4.1976 -0.3952 -0.8737 7 7 3.9254 -2.4188 -1.4204 8 6 5.2569 -2.7373 -1.4528 9 1 5.9781 -2.0926 -0.9724 10 6 5.6796 -3.8886 -2.1030 11 7 4.8006 -4.6738 -2.6888 12 14 7.4957 -4.3234 -2.1466 13 1 7.8320 -5.1633 -0.9691 14 1 7.7952 -5.0743 -3.3921 15 1 8.3039 -3.0779 -2.1131 16 6 3.2493 -1.4769 0.7667 17 7 2.0430 -0.7384 1.1682 18 6 1.4972 -0.7363 2.4005 19 8 0.5531 -0.0113 2.6457 20 6 2.0469 -1.6162 3.4541 21 6 1.3853 -1.7421 4.6771 22 6 1.9003 -2.5643 5.6583 23 6 3.0713 -3.2649 5.4352 24 6 3.7374 -3.1453 4.2221 25 7 4.9249 -3.8576 4.0013 26 6 5.4926 -4.7576 4.8276 27 7 6.5857 -5.1972 4.2582 28 6 6.7535 -4.5991 3.0792 29 7 5.7628 -3.7703 2.8774 30 6 3.2255 -2.3265 3.2279 31 1 -0.3633 0.5007 0.8973 32 1 -0.3633 0.5268 -0.8824 33 1 -0.3633 -1.0276 -0.0152 34 1 1.4510 -1.6481 -1.4409 35 1 2.1398 -0.1264 -2.1002 36 1 3.2776 -2.9979 -1.8516 37 1 5.0960 -5.4781 -3.1435 38 1 4.1064 -1.1281 1.3427 39 1 3.1023 -2.5444 0.9308 40 1 0.4708 -1.1959 4.8553 41 1 1.3874 -2.6602 6.6039 42 1 3.4697 -3.9065 6.2071 43 1 5.1109 -5.0644 5.7901 44 1 7.5755 -4.7714 2.4001 45 1 3.7397 -2.2359 2.2825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989430265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = 136.906542 kcal Electronic energy + Delta-G solvation = -30068.807438 eV Core-core repulsion = 26090.124558 eV Total energy + Delta-G solvation = -3978.682880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.31385 -40.58970 -38.86104 -37.38012 -34.28068 -34.15539 -32.87131 -31.46244 -31.35804 -30.31581 -29.58136 -28.48447 -25.91245 -24.69592 -24.01728 -23.56452 -22.51734 -21.35876 -21.05475 -20.35883 -19.56343 -17.85779 -17.29072 -16.79858 -16.40227 -16.14331 -15.85431 -15.72918 -15.01761 -14.80885 -14.64030 -14.13006 -14.04174 -13.84188 -13.68885 -13.43651 -13.25491 -12.99979 -12.72449 -12.38454 -12.23617 -11.98294 -11.91178 -11.81378 -11.62176 -11.23809 -10.94284 -10.90835 -10.71158 -10.46391 -10.36963 -10.10665 -10.06226 -9.86689 -9.76675 -9.63977 -9.28010 -8.98671 -8.60783 -8.38260 -7.11487 -5.85298 -3.16306 0.44921 0.81908 1.86548 2.12527 2.82872 2.93351 3.06514 3.38327 3.44371 3.46096 3.69354 4.12763 4.20911 4.46108 4.53231 4.70631 4.71576 4.85103 4.96471 5.00749 5.10131 5.17796 5.19814 5.31367 5.42963 5.52072 5.59626 5.62653 5.77030 5.79139 5.90180 5.98399 6.02265 6.04127 6.10502 6.15240 6.24854 6.33105 6.36297 6.39353 6.42324 6.44526 6.62592 6.78022 6.89004 7.63363 7.68323 7.98700 8.23962 8.31474 9.44048 9.95666 10.30604 11.36683 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007420 B = 0.005729 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3772.896750 B = 4886.521469 C = 8343.014261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 H 0.076 0.924 4 C -0.137 4.137 5 C 0.172 3.828 6 H 0.068 0.932 7 N -0.710 5.710 8 C -0.244 4.244 9 H 0.073 0.927 10 C -0.006 4.006 11 N -0.930 5.930 12 Si 0.905 3.095 13 H -0.288 1.288 14 H -0.292 1.292 15 H -0.281 1.281 16 C 0.061 3.939 17 N -0.600 5.600 18 C 0.572 3.428 19 O -0.544 6.544 20 C -0.107 4.107 21 C -0.067 4.067 22 C -0.106 4.106 23 C -0.115 4.115 24 C 0.143 3.857 25 N -0.333 5.333 26 C 0.252 3.748 27 N -0.537 5.537 28 C 0.208 3.792 29 N -0.287 5.287 30 C -0.117 4.117 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.219 0.781 44 H 0.223 0.777 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 4.647 15.521 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 H 0.094 0.906 4 C -0.176 4.176 5 C 0.060 3.940 6 H 0.086 0.914 7 N -0.350 5.350 8 C -0.375 4.375 9 H 0.091 0.909 10 C -0.202 4.202 11 N -0.577 5.577 12 Si 0.736 3.264 13 H -0.215 1.215 14 H -0.218 1.218 15 H -0.206 1.206 16 C -0.064 4.064 17 N -0.333 5.333 18 C 0.361 3.639 19 O -0.424 6.424 20 C -0.110 4.110 21 C -0.087 4.087 22 C -0.125 4.125 23 C -0.137 4.137 24 C 0.051 3.949 25 N -0.118 5.118 26 C -0.044 4.044 27 N -0.263 5.263 28 C -0.095 4.095 29 N -0.111 5.111 30 C -0.136 4.136 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.222 0.778 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.152 0.848 43 H 0.236 0.764 44 H 0.239 0.761 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -5.518 5.182 15.127 16.915 hybrid contribution 0.836 -0.824 0.098 1.178 sum -4.682 4.357 15.225 16.514 Atomic orbital electron populations 1.22144 0.94212 1.02565 1.03249 1.21900 0.94851 0.95449 0.84354 0.90625 1.23202 0.97704 1.00386 0.96262 1.21253 0.93278 0.91259 0.88238 0.91450 1.42371 1.06202 1.23532 1.62912 1.19208 0.83759 1.05277 1.29248 0.90939 1.24728 0.97612 0.97499 1.00367 1.69659 1.32540 1.15297 1.40239 0.86225 0.84939 0.78121 0.77121 1.21486 1.21836 1.20629 1.23804 0.85135 0.96762 1.00711 1.48535 1.28338 1.47701 1.08722 1.17784 0.82704 0.82269 0.81103 1.90684 1.28826 1.42128 1.80712 1.19872 0.96130 0.99493 0.95552 1.21356 0.99551 0.96486 0.91303 1.20909 0.95244 0.96593 0.99727 1.20995 0.96383 1.01269 0.95020 1.17460 0.85454 0.96525 0.95507 1.47843 1.18089 1.31087 1.14746 1.26107 0.90641 0.89635 0.97998 1.70613 1.17781 1.28513 1.09392 1.26243 0.97789 0.91677 0.93743 1.78431 1.04188 1.24257 1.04260 1.22956 0.95637 0.93516 1.01504 0.89901 0.92022 0.92723 0.90407 0.89891 0.77843 0.93408 0.91329 0.89810 0.84072 0.84209 0.84843 0.76434 0.76087 0.79502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 8.77 37.16 0.33 -1.91 16 2 C 0.14 1.99 3.75 -66.42 -0.25 1.74 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.10 6.12 -24.45 -0.15 -2.24 16 5 C 0.17 3.15 3.60 -65.96 -0.24 2.92 16 6 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 7 N -0.71 -16.50 5.18 -51.52 -0.27 -16.77 16 8 C -0.24 -6.34 9.98 -15.06 -0.15 -6.49 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 11 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 12 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C 0.06 1.05 4.62 -3.05 -0.01 1.04 16 17 N -0.60 -9.54 3.24 -167.80 -0.54 -10.09 16 18 C 0.57 9.23 7.53 -12.32 -0.09 9.13 16 19 O -0.54 -9.49 14.19 5.32 0.08 -9.42 16 20 C -0.11 -1.53 5.87 -104.99 -0.62 -2.15 16 21 C -0.07 -0.77 9.59 -39.16 -0.38 -1.15 16 22 C -0.11 -0.94 10.02 -39.66 -0.40 -1.34 16 23 C -0.12 -1.09 9.47 -39.32 -0.37 -1.47 16 24 C 0.14 1.90 6.68 -83.64 -0.56 1.34 16 25 N -0.33 -4.78 3.82 -11.84 -0.05 -4.83 16 26 C 0.25 3.00 11.97 -90.37 -1.08 1.92 16 27 N -0.54 -7.75 11.19 -15.75 -0.18 -7.93 16 28 C 0.21 3.25 13.03 -91.78 -1.20 2.05 16 29 N -0.29 -4.97 12.06 29.30 0.35 -4.62 16 30 C -0.12 -1.75 8.23 -39.00 -0.32 -2.07 16 31 H 0.08 1.24 5.93 -51.93 -0.31 0.93 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.26 7.92 -51.92 -0.41 0.85 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.39 9.68 7.72 -40.82 -0.32 9.37 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.07 1.18 6.82 -51.93 -0.35 0.82 16 39 H 0.08 1.62 6.52 -51.93 -0.34 1.28 16 40 H 0.14 1.51 7.67 -52.49 -0.40 1.11 16 41 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.13 0.79 6.81 -52.49 -0.36 0.43 16 43 H 0.22 1.42 7.12 -52.49 -0.37 1.05 16 44 H 0.22 2.97 8.06 -52.49 -0.42 2.54 16 45 H 0.19 3.16 2.46 -57.27 -0.14 3.02 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -32.55 370.28 -10.41 -42.96 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -5.51 Total: 13.79 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -5.58 Total: 1.08 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: 0.05 Total: -70.48 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.55 -10.41 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989430265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.864 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds