Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.41667 * 2 1 4 4 C 1.54913 * 110.36547 * 237.70485 * 2 1 3 5 5 C 1.55399 * 101.66824 * 204.23760 * 4 2 1 6 6 H 1.09003 * 110.69779 * 277.05405 * 5 4 2 7 7 N 1.46501 * 110.85569 * 153.69675 * 5 4 2 8 8 C 1.36943 * 119.99829 * 160.08539 * 7 5 4 9 9 H 1.08001 * 119.99671 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99812 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99801 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99952 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47066 * 89.99766 * 12 10 8 14 14 H 1.48489 * 109.47198 * 210.00268 * 12 10 8 15 15 H 1.48506 * 109.47069 * 330.00284 * 12 10 8 16 16 C 1.54335 * 102.82795 * 35.33725 * 5 4 2 17 17 N 1.47030 * 107.39720 * 337.97920 * 16 5 4 18 18 C 1.34773 * 125.64210 * 178.90171 * 17 16 5 19 19 O 1.21547 * 119.99844 * 174.62648 * 18 17 16 20 20 C 1.47859 * 120.00180 * 354.61851 * 18 17 16 21 21 C 1.39623 * 120.10895 * 188.01768 * 20 18 17 22 22 C 1.37982 * 119.98267 * 179.97438 * 21 20 18 23 23 C 1.38269 * 120.21903 * 0.02562 * 22 21 20 24 24 C 1.38916 * 120.22350 * 0.02562 * 23 22 21 25 25 N 1.40221 * 119.98949 * 179.97438 * 24 23 22 26 26 C 1.34725 * 126.84719 * 4.70496 * 25 24 23 27 27 N 1.30849 * 108.03290 * 179.87440 * 26 25 24 28 28 C 1.33257 * 109.84394 * 0.40401 * 27 26 25 29 29 N 1.30739 * 109.00204 * 359.75330 * 28 27 26 30 30 C 1.38593 * 120.01075 * 359.69908 * 24 23 22 31 31 H 1.08993 * 109.47237 * 299.16119 * 1 2 3 32 32 H 1.09004 * 109.47051 * 59.16111 * 1 2 3 33 33 H 1.09002 * 109.47133 * 179.15524 * 1 2 3 34 34 H 1.09008 * 111.00517 * 322.22648 * 4 2 1 35 35 H 1.09002 * 111.00662 * 86.07772 * 4 2 1 36 36 H 0.96998 * 120.00216 * 340.08985 * 7 5 4 37 37 H 0.97006 * 119.99478 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.88169 * 218.48519 * 16 5 4 39 39 H 1.08994 * 109.88079 * 97.47032 * 16 5 4 40 40 H 1.07996 * 120.01159 * 359.95641 * 21 20 18 41 41 H 1.08001 * 119.88802 * 179.97438 * 22 21 20 42 42 H 1.07995 * 119.88369 * 179.97438 * 23 22 21 43 43 H 1.07998 * 125.97638 * 0.02562 * 26 25 24 44 44 H 1.08002 * 125.49562 * 179.74893 * 28 27 26 45 45 H 1.08004 * 120.10662 * 180.27402 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7759 -1.2276 5 6 3.4795 -1.2034 -0.7347 6 1 4.1976 -0.3952 -0.8737 7 7 3.9254 -2.4188 -1.4204 8 6 5.2569 -2.7373 -1.4528 9 1 5.9781 -2.0926 -0.9724 10 6 5.6796 -3.8886 -2.1030 11 7 4.8006 -4.6738 -2.6888 12 14 7.4957 -4.3234 -2.1466 13 1 7.8320 -5.1633 -0.9691 14 1 7.7952 -5.0743 -3.3921 15 1 8.3039 -3.0779 -2.1131 16 6 3.2493 -1.4769 0.7667 17 7 2.0430 -0.7384 1.1682 18 6 1.4972 -0.7363 2.4005 19 8 0.5531 -0.0113 2.6457 20 6 2.0469 -1.6162 3.4541 21 6 1.3853 -1.7421 4.6771 22 6 1.9003 -2.5643 5.6583 23 6 3.0713 -3.2649 5.4352 24 6 3.7374 -3.1453 4.2221 25 7 4.9249 -3.8576 4.0013 26 6 5.4926 -4.7576 4.8276 27 7 6.5857 -5.1972 4.2582 28 6 6.7535 -4.5991 3.0792 29 7 5.7628 -3.7703 2.8774 30 6 3.2255 -2.3265 3.2279 31 1 -0.3633 0.5007 0.8973 32 1 -0.3633 0.5268 -0.8824 33 1 -0.3633 -1.0276 -0.0152 34 1 1.4510 -1.6481 -1.4409 35 1 2.1398 -0.1264 -2.1002 36 1 3.2776 -2.9979 -1.8516 37 1 5.0960 -5.4781 -3.1435 38 1 4.1064 -1.1281 1.3427 39 1 3.1023 -2.5444 0.9308 40 1 0.4708 -1.1959 4.8553 41 1 1.3874 -2.6602 6.6039 42 1 3.4697 -3.9065 6.2071 43 1 5.1109 -5.0644 5.7901 44 1 7.5755 -4.7714 2.4001 45 1 3.7397 -2.2359 2.2825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989430265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = 118.308518 kcal Electronic energy + Delta-G solvation = -30069.613909 eV Core-core repulsion = 26090.124558 eV Total energy + Delta-G solvation = -3979.489351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.35381 -41.78488 -39.90192 -38.72666 -36.01170 -35.20854 -33.97253 -33.25447 -32.46575 -31.36330 -30.56560 -30.14429 -27.17318 -26.05125 -25.40860 -24.80288 -23.61325 -22.51277 -22.18914 -21.72102 -20.70786 -19.24614 -18.89181 -17.97754 -17.59941 -17.14326 -16.95244 -16.88783 -16.50552 -16.10882 -15.75098 -15.47227 -15.42789 -15.12366 -15.01747 -14.72110 -14.48768 -14.27607 -13.97478 -13.55447 -13.35620 -13.31195 -13.10852 -12.93771 -12.84868 -12.78933 -12.67563 -12.25878 -12.13772 -11.90761 -11.83666 -11.72614 -11.57152 -11.19814 -11.02814 -10.99273 -10.75182 -10.18812 -9.79622 -9.46854 -9.07427 -7.94406 -5.24160 -0.46841 -0.15313 0.90472 1.16690 1.48345 1.48827 1.57059 1.70316 1.84204 1.86632 2.56427 2.70418 3.12142 3.31426 3.35593 3.44343 3.70174 3.74126 3.78426 3.82505 3.95885 4.04017 4.09925 4.12270 4.20524 4.27589 4.42134 4.45798 4.47776 4.61118 4.67667 4.75195 4.78881 4.93325 5.03710 5.07735 5.12331 5.17239 5.25246 5.26275 5.27044 5.33092 5.47300 5.53915 5.56448 5.98724 6.25382 6.38278 6.92914 6.98866 7.34208 8.02931 8.27666 9.28483 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007420 B = 0.005729 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3772.896750 B = 4886.521469 C = 8343.014261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.090 0.910 4 C -0.124 4.124 5 C 0.164 3.836 6 H 0.071 0.929 7 N -0.721 5.721 8 C -0.234 4.234 9 H 0.075 0.925 10 C -0.065 4.065 11 N -0.967 5.967 12 Si 0.962 3.038 13 H -0.284 1.284 14 H -0.299 1.299 15 H -0.269 1.269 16 C 0.089 3.911 17 N -0.604 5.604 18 C 0.567 3.433 19 O -0.560 6.560 20 C -0.131 4.131 21 C -0.068 4.068 22 C -0.087 4.087 23 C -0.094 4.094 24 C 0.121 3.879 25 N -0.339 5.339 26 C 0.267 3.733 27 N -0.559 5.559 28 C 0.198 3.802 29 N -0.341 5.341 30 C -0.140 4.140 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.376 0.624 37 H 0.249 0.751 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.149 0.851 41 H 0.188 0.812 42 H 0.182 0.818 43 H 0.276 0.724 44 H 0.230 0.770 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.045 4.956 18.749 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.033 3.967 3 H 0.108 0.892 4 C -0.162 4.162 5 C 0.053 3.947 6 H 0.089 0.911 7 N -0.360 5.360 8 C -0.365 4.365 9 H 0.093 0.907 10 C -0.258 4.258 11 N -0.618 5.618 12 Si 0.791 3.209 13 H -0.210 1.210 14 H -0.226 1.226 15 H -0.194 1.194 16 C -0.037 4.037 17 N -0.336 5.336 18 C 0.358 3.642 19 O -0.442 6.442 20 C -0.134 4.134 21 C -0.087 4.087 22 C -0.105 4.105 23 C -0.114 4.114 24 C 0.029 3.971 25 N -0.124 5.124 26 C -0.027 4.027 27 N -0.285 5.285 28 C -0.104 4.104 29 N -0.166 5.166 30 C -0.160 4.160 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.208 0.792 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.167 0.833 41 H 0.206 0.794 42 H 0.199 0.801 43 H 0.291 0.709 44 H 0.246 0.754 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.191 5.549 18.390 20.182 hybrid contribution 0.949 -0.860 -0.751 1.485 sum -5.242 4.689 17.639 18.989 Atomic orbital electron populations 1.22053 0.93195 1.02043 1.03892 1.22041 0.95627 0.95737 0.83291 0.89200 1.23111 0.95251 1.00436 0.97430 1.21460 0.95122 0.89474 0.88654 0.91127 1.42463 1.05144 1.24846 1.63505 1.19503 0.85019 1.04679 1.27334 0.90697 1.25423 1.01207 0.97944 1.01179 1.69807 1.34132 1.15796 1.42049 0.85314 0.80907 0.78071 0.76619 1.21048 1.22609 1.19403 1.23270 0.85685 0.95372 0.99382 1.48576 1.27953 1.47705 1.09388 1.18178 0.82398 0.82235 0.81352 1.90661 1.29521 1.42964 1.81029 1.19830 0.96804 1.00387 0.96427 1.21620 0.99564 0.96852 0.90709 1.21444 0.94477 0.94146 1.00433 1.21547 0.95460 1.00414 0.93998 1.17796 0.85663 0.96916 0.96759 1.47881 1.18272 1.31805 1.14395 1.27189 0.89231 0.87519 0.98795 1.70618 1.19331 1.29329 1.09209 1.26495 0.97795 0.91573 0.94526 1.78347 1.05527 1.25912 1.06789 1.22672 0.96379 0.95460 1.01454 0.91023 0.89462 0.93834 0.91387 0.87892 0.79176 0.94172 0.91830 0.92419 0.83349 0.79434 0.80107 0.70901 0.75410 0.82340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 8.77 71.98 0.63 -3.45 16 2 C 0.14 3.87 3.75 45.47 0.17 4.04 16 3 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.12 -3.79 6.12 32.07 0.20 -3.59 16 5 C 0.16 6.16 3.60 46.27 0.17 6.33 16 6 H 0.07 2.62 8.12 -2.39 -0.02 2.60 16 7 N -0.72 -34.74 5.18 -316.90 -1.64 -36.38 16 8 C -0.23 -12.49 9.98 84.03 0.84 -11.65 16 9 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 10 C -0.07 -3.64 5.50 84.86 0.47 -3.18 16 11 N -0.97 -58.15 13.06 21.65 0.28 -57.87 16 12 Si 0.96 45.29 29.55 68.60 2.03 47.32 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 C 0.09 3.20 4.62 86.73 0.40 3.60 16 17 N -0.60 -19.65 3.24 -803.08 -2.60 -22.25 16 18 C 0.57 18.54 7.53 86.79 0.65 19.19 16 19 O -0.56 -19.51 14.19 -3.86 -0.05 -19.56 16 20 C -0.13 -3.73 5.87 -20.10 -0.12 -3.84 16 21 C -0.07 -1.40 9.59 22.54 0.22 -1.19 16 22 C -0.09 -1.12 10.02 22.22 0.22 -0.90 16 23 C -0.09 -1.34 9.47 22.44 0.21 -1.13 16 24 C 0.12 3.02 6.68 38.05 0.25 3.27 16 25 N -0.34 -9.40 3.82 -191.37 -0.73 -10.14 16 26 C 0.27 5.64 11.97 180.26 2.16 7.80 16 27 N -0.56 -15.50 11.19 -203.74 -2.28 -17.78 16 28 C 0.20 6.32 13.03 180.75 2.35 8.67 16 29 N -0.34 -12.16 12.06 -61.22 -0.74 -12.90 16 30 C -0.14 -4.26 8.23 22.65 0.19 -4.08 16 31 H 0.07 2.10 5.93 -2.39 -0.01 2.08 16 32 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 2.24 7.92 -2.38 -0.02 2.22 16 35 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.38 19.65 7.72 -92.71 -0.72 18.94 16 37 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 38 H 0.06 2.34 6.82 -2.39 -0.02 2.33 16 39 H 0.06 2.41 6.52 -2.39 -0.02 2.39 16 40 H 0.15 2.82 7.67 -2.91 -0.02 2.80 16 41 H 0.19 0.72 8.06 -2.91 -0.02 0.69 16 42 H 0.18 0.84 6.81 -2.91 -0.02 0.82 16 43 H 0.28 2.03 7.12 -2.91 -0.02 2.01 16 44 H 0.23 6.40 8.06 -2.91 -0.02 6.38 16 45 H 0.16 5.72 2.46 -7.40 -0.02 5.70 16 Total: -1.00 -75.67 370.28 3.59 -72.07 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: 0.32 Total: 37.57 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 9.01 Total: 19.90 kcal Atomic # 7 Polarization: -149.60 SS G_CDS: -7.71 Total: -157.31 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.05 Total: -19.56 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -75.67 3.59 -72.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989430265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.381 kcal (2) G-P(sol) polarization free energy of solvation -75.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds