Wall clock time and date at job start Sat Apr 11 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.99474 * 2 1 4 4 C 1.54324 * 109.88456 * 238.90804 * 2 1 3 5 5 C 1.55153 * 102.93903 * 262.77751 * 4 2 1 6 6 H 1.09000 * 111.00963 * 82.57193 * 5 4 2 7 7 N 1.46502 * 111.00142 * 206.38394 * 5 4 2 8 8 C 1.36939 * 120.00196 * 205.00010 * 7 5 4 9 9 H 1.08000 * 119.99787 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00404 * 180.02562 * 8 7 5 11 11 N 1.31619 * 119.99660 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00224 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46977 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47200 * 119.99847 * 12 10 8 15 15 H 1.48501 * 109.46871 * 239.99783 * 12 10 8 16 16 C 1.55132 * 101.48587 * 324.32748 * 5 4 2 17 17 N 1.47017 * 109.88362 * 121.09518 * 2 1 3 18 18 C 1.34774 * 125.65152 * 300.44196 * 17 2 1 19 19 O 1.21551 * 120.00077 * 5.73588 * 18 17 2 20 20 C 1.47861 * 120.00272 * 185.73433 * 18 17 2 21 21 C 1.39619 * 120.10929 * 24.50899 * 20 18 17 22 22 C 1.37980 * 119.98481 * 180.02562 * 21 20 18 23 23 C 1.38260 * 120.21578 * 0.02562 * 22 21 20 24 24 C 1.38921 * 120.22918 * 359.95790 * 23 22 21 25 25 N 1.40224 * 119.99435 * 180.02562 * 24 23 22 26 26 C 1.34723 * 126.84179 * 0.02562 * 25 24 23 27 27 N 1.30850 * 108.03409 * 179.97438 * 26 25 24 28 28 C 1.33261 * 109.84208 * 359.97438 * 27 26 25 29 29 N 1.30758 * 108.99689 * 359.75693 * 28 27 26 30 30 C 1.38592 * 120.00691 * 0.04023 * 24 23 22 31 31 H 1.08997 * 109.46796 * 300.35731 * 1 2 3 32 32 H 1.09004 * 109.46706 * 60.35394 * 1 2 3 33 33 H 1.08995 * 109.46666 * 180.35371 * 1 2 3 34 34 H 1.09004 * 110.71827 * 21.13373 * 4 2 1 35 35 H 1.08995 * 110.72035 * 144.40907 * 4 2 1 36 36 H 0.97000 * 120.00448 * 24.99495 * 7 5 4 37 37 H 0.96997 * 120.00071 * 180.02562 * 11 10 8 38 38 H 1.08995 * 110.49363 * 278.45502 * 16 5 4 39 39 H 1.09005 * 110.33574 * 156.06407 * 16 5 4 40 40 H 1.07997 * 120.00767 * 0.02562 * 21 20 18 41 41 H 1.07999 * 119.88777 * 180.02562 * 22 21 20 42 42 H 1.07998 * 119.88489 * 179.97438 * 23 22 21 43 43 H 1.07998 * 125.98363 * 359.95652 * 26 25 24 44 44 H 1.08000 * 125.50207 * 180.02562 * 28 27 26 45 45 H 1.08004 * 120.10151 * 180.25143 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2428 5 6 2.3519 -2.1694 -0.6925 6 1 1.4452 -2.7736 -0.6605 7 7 3.3931 -2.8314 -1.4823 8 6 3.4559 -4.1988 -1.5234 9 1 2.7376 -4.7891 -0.9739 10 6 4.4428 -4.8261 -2.2713 11 7 5.3179 -4.1067 -2.9414 12 14 4.5289 -6.6913 -2.3268 13 1 3.4399 -7.2620 -1.4940 14 1 4.3733 -7.1525 -3.7298 15 1 5.8422 -7.1420 -1.8004 16 6 2.8614 -1.8465 0.7368 17 7 2.0301 -0.7140 1.1839 18 6 1.7754 -0.3845 2.4657 19 8 0.9950 0.5122 2.7191 20 6 2.4454 -1.1138 3.5636 21 6 3.6665 -1.7520 3.3378 22 6 4.2892 -2.4323 4.3642 23 6 3.7077 -2.4851 5.6174 24 6 2.4931 -1.8530 5.8521 25 7 1.9080 -1.9093 7.1252 26 6 2.3999 -2.5327 8.2135 27 7 1.5590 -2.3507 9.1993 28 6 0.5250 -1.6206 8.7829 29 7 0.6957 -1.3213 7.5215 30 6 1.8595 -1.1670 4.8280 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5084 -0.8932 33 1 -0.3632 -1.0276 0.0063 34 1 1.2918 -0.7890 -2.0201 35 1 2.9657 -0.2830 -1.6182 36 1 4.0380 -2.3013 -1.9762 37 1 6.0073 -4.5450 -3.4643 38 1 3.9124 -1.5588 0.7113 39 1 2.7179 -2.7049 1.3931 40 1 4.1235 -1.7132 2.3601 41 1 5.2339 -2.9251 4.1879 42 1 4.1995 -3.0194 6.4168 43 1 3.3260 -3.0861 8.2634 44 1 -0.3160 -1.3204 9.3904 45 1 0.9171 -0.6716 5.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989430266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:19 Heat of formation + Delta-G solvation = 99.996595 kcal Electronic energy + Delta-G solvation = -28965.642920 eV Core-core repulsion = 24985.359504 eV Total energy + Delta-G solvation = -3980.283416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.38493 -41.71459 -39.97572 -38.70454 -35.99670 -35.43571 -33.41813 -33.10836 -32.56346 -31.91054 -30.38977 -30.00092 -26.95881 -26.07226 -25.33670 -25.09213 -23.53535 -22.50175 -22.30241 -21.57975 -20.56117 -19.29661 -19.25479 -17.93028 -17.31083 -17.04921 -16.92050 -16.90679 -16.45737 -16.24457 -15.76690 -15.52263 -15.20051 -15.02835 -14.92842 -14.68302 -14.54853 -14.32605 -14.12079 -13.91379 -13.42178 -13.27236 -13.10282 -13.00384 -12.82102 -12.73793 -12.56801 -12.23434 -12.13483 -12.02082 -11.89756 -11.70411 -11.45614 -11.23402 -11.13320 -11.02951 -10.87041 -10.24111 -9.74495 -9.54600 -9.02375 -7.92596 -5.22217 -0.49472 -0.17666 0.86195 1.07604 1.51658 1.54123 1.62180 1.65487 1.82771 1.86305 2.58600 2.64367 3.14517 3.32775 3.38497 3.44004 3.66536 3.72709 3.81525 3.89973 3.95435 3.99379 4.03393 4.09431 4.27091 4.31892 4.41800 4.46404 4.51798 4.66822 4.70975 4.75756 4.86257 4.88533 4.98974 5.09711 5.13990 5.20112 5.22723 5.25882 5.27700 5.33658 5.42920 5.52454 5.57684 5.91451 6.28354 6.40237 6.89836 6.97899 7.37052 8.06890 8.32070 9.30061 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011454 B = 0.002919 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.947473 B = 9590.646098 C =11405.273002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 H 0.077 0.923 4 C -0.126 4.126 5 C 0.166 3.834 6 H 0.063 0.937 7 N -0.719 5.719 8 C -0.240 4.240 9 H 0.077 0.923 10 C -0.065 4.065 11 N -0.964 5.964 12 Si 0.965 3.035 13 H -0.267 1.267 14 H -0.299 1.299 15 H -0.293 1.293 16 C 0.082 3.918 17 N -0.600 5.600 18 C 0.567 3.433 19 O -0.574 6.574 20 C -0.122 4.122 21 C -0.098 4.098 22 C -0.088 4.088 23 C -0.091 4.091 24 C 0.127 3.873 25 N -0.339 5.339 26 C 0.270 3.730 27 N -0.561 5.561 28 C 0.206 3.794 29 N -0.358 5.358 30 C -0.075 4.075 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.379 0.621 37 H 0.251 0.749 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.150 0.850 41 H 0.178 0.822 42 H 0.183 0.817 43 H 0.271 0.729 44 H 0.250 0.750 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 4.008 18.209 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.095 0.905 4 C -0.165 4.165 5 C 0.055 3.945 6 H 0.081 0.919 7 N -0.358 5.358 8 C -0.372 4.372 9 H 0.095 0.905 10 C -0.258 4.258 11 N -0.614 5.614 12 Si 0.795 3.205 13 H -0.191 1.191 14 H -0.227 1.227 15 H -0.220 1.220 16 C -0.043 4.043 17 N -0.332 5.332 18 C 0.357 3.643 19 O -0.456 6.456 20 C -0.126 4.126 21 C -0.116 4.116 22 C -0.106 4.106 23 C -0.111 4.111 24 C 0.035 3.965 25 N -0.123 5.123 26 C -0.023 4.023 27 N -0.287 5.287 28 C -0.096 4.096 29 N -0.183 5.183 30 C -0.096 4.096 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.212 0.788 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.167 0.833 41 H 0.196 0.804 42 H 0.200 0.800 43 H 0.286 0.714 44 H 0.266 0.734 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.498 4.612 18.334 19.226 hybrid contribution 0.248 -0.579 -0.595 0.866 sum -3.249 4.033 17.739 18.479 Atomic orbital electron populations 1.22093 0.94231 1.02120 1.02885 1.21632 0.95113 0.95987 0.83794 0.90469 1.22952 1.02294 0.95080 0.96136 1.21478 0.91463 0.92424 0.89086 0.91917 1.42407 1.34156 1.03300 1.55977 1.19604 1.10228 0.83861 1.23464 0.90470 1.25439 0.98374 1.01575 1.00431 1.69794 1.19902 1.35380 1.36320 0.85203 0.77373 0.81122 0.76810 1.19149 1.22677 1.21975 1.23559 0.94614 0.87558 0.98602 1.48477 1.49700 1.30550 1.04465 1.18210 0.81101 0.82921 0.82041 1.90723 1.37433 1.33529 1.83884 1.19644 0.97590 1.02305 0.93056 1.22217 0.93287 0.94240 1.01889 1.21427 1.01160 0.97444 0.90583 1.21476 0.91606 0.98125 0.99909 1.17559 0.95016 1.02343 0.81618 1.47774 1.16341 1.38978 1.09210 1.27184 1.00637 0.94154 0.80368 1.70682 1.05014 1.22138 1.30903 1.26820 0.98686 0.93891 0.90172 1.78198 1.00536 1.22844 1.16758 1.20729 1.00132 0.97827 0.90954 0.92973 0.89603 0.92929 0.88894 0.90254 0.78823 0.93993 0.90422 0.90460 0.83277 0.80430 0.79955 0.71412 0.73392 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 9.05 71.98 0.65 -3.47 16 2 C 0.14 3.82 3.53 45.34 0.16 3.98 16 3 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.13 -3.55 6.14 31.78 0.20 -3.36 16 5 C 0.17 5.66 3.73 46.46 0.17 5.84 16 6 H 0.06 2.23 8.09 -2.39 -0.02 2.21 16 7 N -0.72 -31.40 5.24 -316.01 -1.66 -33.06 16 8 C -0.24 -11.83 9.96 84.03 0.84 -10.99 16 9 H 0.08 3.68 7.83 -2.91 -0.02 3.66 16 10 C -0.07 -3.41 5.50 84.86 0.47 -2.94 16 11 N -0.96 -54.16 13.06 21.65 0.28 -53.87 16 12 Si 0.96 42.50 29.55 68.60 2.03 44.53 16 13 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 14 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 15 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 16 C 0.08 2.45 4.69 86.93 0.41 2.86 16 17 N -0.60 -17.89 3.08 -790.97 -2.43 -20.32 16 18 C 0.57 18.40 7.47 86.79 0.65 19.05 16 19 O -0.57 -22.03 15.31 -3.88 -0.06 -22.09 16 20 C -0.12 -3.36 5.67 -20.10 -0.11 -3.47 16 21 C -0.10 -2.12 8.07 22.54 0.18 -1.94 16 22 C -0.09 -1.29 10.02 22.21 0.22 -1.07 16 23 C -0.09 -1.19 9.47 22.44 0.21 -0.98 16 24 C 0.13 2.67 6.69 38.05 0.25 2.93 16 25 N -0.34 -7.18 3.82 -191.36 -0.73 -7.91 16 26 C 0.27 4.05 11.98 180.26 2.16 6.21 16 27 N -0.56 -10.76 11.19 -203.73 -2.28 -13.04 16 28 C 0.21 4.03 13.03 180.75 2.35 6.39 16 29 N -0.36 -8.99 12.05 -61.21 -0.74 -9.73 16 30 C -0.08 -2.06 9.22 22.65 0.21 -1.86 16 31 H 0.05 1.59 6.58 -2.39 -0.02 1.57 16 32 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 2.43 7.83 -2.39 -0.02 2.41 16 35 H 0.08 2.24 8.00 -2.39 -0.02 2.22 16 36 H 0.38 17.85 7.76 -92.71 -0.72 17.13 16 37 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 38 H 0.08 2.31 6.84 -2.39 -0.02 2.29 16 39 H 0.08 2.29 6.81 -2.38 -0.02 2.27 16 40 H 0.15 3.31 4.58 -2.91 -0.01 3.30 16 41 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.18 0.63 6.79 -2.91 -0.02 0.61 16 43 H 0.27 0.85 7.09 -2.91 -0.02 0.83 16 44 H 0.25 2.85 8.06 -2.91 -0.02 2.83 16 45 H 0.12 3.88 7.52 -2.91 -0.02 3.86 16 Total: -1.00 -72.37 373.41 3.75 -68.62 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.32 Total: 29.69 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 9.02 Total: 17.17 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -7.56 Total: -137.92 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.06 Total: -22.09 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -72.37 3.75 -68.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989430266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.616 kcal (2) G-P(sol) polarization free energy of solvation -72.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds