Wall clock time and date at job start Sat Apr 11 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.99714 * 2 1 4 4 C 1.54328 * 109.78120 * 121.16557 * 2 1 3 5 5 C 1.55161 * 103.01761 * 97.49707 * 4 2 1 6 6 H 1.08994 * 111.00353 * 277.23196 * 5 4 2 7 7 N 1.46503 * 111.00207 * 153.38122 * 5 4 2 8 8 C 1.36937 * 119.99910 * 161.34950 * 7 5 4 9 9 H 1.08001 * 120.00080 * 359.97438 * 8 7 5 10 10 C 1.38818 * 119.99868 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99705 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00048 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46962 * 90.00293 * 12 10 8 14 14 H 1.48496 * 109.47275 * 210.00410 * 12 10 8 15 15 H 1.48497 * 109.47390 * 330.00914 * 12 10 8 16 16 C 1.54902 * 101.58130 * 35.31232 * 5 4 2 17 17 N 1.47025 * 109.88327 * 238.90772 * 2 1 3 18 18 C 1.34774 * 125.64643 * 59.56216 * 17 2 1 19 19 O 1.21520 * 120.00486 * 3.38271 * 18 17 2 20 20 C 1.48162 * 119.99951 * 183.39439 * 18 17 2 21 21 C 1.39942 * 120.88843 * 334.72847 * 20 18 17 22 22 C 1.38062 * 119.13359 * 179.97438 * 21 20 18 23 23 N 1.31837 * 120.98530 * 359.97438 * 22 21 20 24 24 C 1.32244 * 121.96922 * 0.02562 * 23 22 21 25 25 N 1.39830 * 119.62170 * 179.97438 * 24 23 22 26 26 C 1.35845 * 126.10570 * 359.71088 * 25 24 23 27 27 C 1.35279 * 107.61653 * 179.87461 * 26 25 24 28 28 C 1.39955 * 107.96705 * 0.38620 * 27 26 25 29 29 N 1.30826 * 108.36903 * 359.75697 * 28 27 26 30 30 C 1.38909 * 120.75123 * 359.97438 * 24 23 22 31 31 H 1.08999 * 109.47119 * 179.63645 * 1 2 3 32 32 H 1.09000 * 109.47351 * 299.64156 * 1 2 3 33 33 H 1.08999 * 109.47259 * 59.64032 * 1 2 3 34 34 H 1.08999 * 110.85084 * 339.03165 * 4 2 1 35 35 H 1.09000 * 110.51765 * 215.80562 * 4 2 1 36 36 H 0.97004 * 119.99990 * 341.35458 * 7 5 4 37 37 H 0.96995 * 120.00168 * 179.97438 * 11 10 8 38 38 H 1.09010 * 110.36379 * 204.15113 * 16 5 4 39 39 H 1.08996 * 110.46316 * 81.87544 * 16 5 4 40 40 H 1.07993 * 120.43524 * 359.95201 * 21 20 18 41 41 H 1.07999 * 119.50672 * 179.71934 * 22 21 20 42 42 H 1.08003 * 126.18748 * 359.97438 * 26 25 24 43 43 H 1.07995 * 126.02026 * 180.11077 * 27 26 25 44 44 H 1.08004 * 125.81509 * 179.77788 * 28 27 26 45 45 H 1.07996 * 120.53062 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0523 -0.7515 1.2426 5 6 2.3562 -2.1697 0.6913 6 1 1.4522 -2.7778 0.6577 7 7 3.4001 -2.8275 1.4811 8 6 3.5513 -4.1871 1.4188 9 1 2.9008 -4.7745 0.7877 10 6 4.5401 -4.8105 2.1675 11 7 4.6858 -6.1172 2.1073 12 14 5.6648 -3.7947 3.2595 13 1 5.0642 -3.6738 4.6123 14 1 6.9880 -4.4608 3.3631 15 1 5.8363 -2.4420 2.6715 16 6 2.8614 -1.8464 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.7754 -0.3843 -2.4657 19 8 1.1289 0.6128 -2.7198 20 6 2.2835 -1.2377 -3.5651 21 6 3.4135 -2.0434 -3.3857 22 6 3.8553 -2.8249 -4.4346 23 7 3.2289 -2.8210 -5.5946 24 6 2.1577 -2.0759 -5.8095 25 7 1.5319 -2.1094 -7.0595 26 6 1.9203 -2.8507 -8.1295 27 6 1.0526 -2.6012 -9.1370 28 6 0.1104 -1.6748 -8.6759 29 7 0.3959 -1.3799 -7.4336 30 6 1.6471 -1.2605 -4.8075 31 1 -0.3633 -1.0276 -0.0065 32 1 -0.3634 0.5082 0.8932 33 1 -0.3634 0.5194 -0.8867 34 1 1.2886 -0.7952 2.0191 35 1 2.9606 -0.2815 1.6196 36 1 3.9841 -2.3000 2.0482 37 1 5.3769 -6.5528 2.6301 38 1 2.7178 -2.7048 -1.3934 39 1 3.9126 -1.5593 -0.7134 40 1 3.9335 -2.0535 -2.4392 41 1 4.7295 -3.4455 -4.3041 42 1 2.7674 -3.5195 -8.1683 43 1 1.0842 -3.0366 -10.1248 44 1 -0.7124 -1.2721 -9.2480 45 1 0.7723 -0.6531 -4.9870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989442515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:40 Heat of formation + Delta-G solvation = 127.014908 kcal Electronic energy + Delta-G solvation = -29052.046861 eV Core-core repulsion = 25072.935048 eV Total energy + Delta-G solvation = -3979.111814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80233 -40.77782 -39.54280 -37.64062 -34.48577 -34.14070 -33.01538 -31.74306 -31.48599 -30.50668 -29.57844 -28.97786 -25.96388 -25.24517 -24.22313 -23.72353 -22.36453 -21.26570 -21.03647 -20.48034 -19.51593 -18.35075 -17.84223 -17.20596 -16.26742 -15.98481 -15.91042 -15.70158 -15.60876 -14.97296 -14.68960 -14.35437 -14.17316 -13.85792 -13.73316 -13.70289 -13.48178 -13.18378 -13.02439 -12.89761 -12.74197 -12.36263 -12.05558 -11.98848 -11.64035 -11.20730 -11.09606 -10.97542 -10.75857 -10.66139 -10.48856 -10.34150 -10.20314 -10.10339 -9.79614 -9.74354 -9.43983 -9.14769 -8.64587 -8.50872 -7.51267 -5.94295 -3.33611 0.33114 0.62267 1.77764 1.84830 2.50735 2.71709 2.86919 3.24475 3.27925 3.34827 3.58748 3.97690 4.17906 4.31815 4.42949 4.61990 4.68240 4.71499 4.79556 4.87128 4.97002 5.02131 5.15974 5.21494 5.36387 5.40019 5.41284 5.46816 5.52576 5.60285 5.64516 5.66170 5.75034 5.80527 5.86318 5.93549 6.05209 6.09878 6.20156 6.25981 6.30040 6.40879 6.58788 6.80064 7.11120 7.47181 7.61070 7.78673 8.04178 8.23848 8.99913 9.71907 9.89324 11.22989 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.002897 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.599012 B = 9663.377332 C =11253.995273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.075 0.925 4 C -0.141 4.141 5 C 0.179 3.821 6 H 0.075 0.925 7 N -0.735 5.735 8 C -0.257 4.257 9 H 0.092 0.908 10 C 0.012 3.988 11 N -0.926 5.926 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.060 3.940 17 N -0.599 5.599 18 C 0.573 3.427 19 O -0.533 6.533 20 C -0.057 4.057 21 C -0.161 4.161 22 C 0.135 3.865 23 N -0.494 5.494 24 C 0.360 3.640 25 N -0.325 5.325 26 C 0.081 3.919 27 C -0.268 4.268 28 C 0.062 3.938 29 N -0.283 5.283 30 C -0.111 4.111 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.365 0.635 37 H 0.262 0.738 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.167 0.833 41 H 0.178 0.822 42 H 0.183 0.817 43 H 0.156 0.844 44 H 0.193 0.807 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 9.679 -15.620 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.093 0.907 4 C -0.179 4.179 5 C 0.067 3.933 6 H 0.093 0.907 7 N -0.377 5.377 8 C -0.387 4.387 9 H 0.110 0.890 10 C -0.185 4.185 11 N -0.573 5.573 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.065 4.065 17 N -0.332 5.332 18 C 0.361 3.639 19 O -0.411 6.411 20 C -0.068 4.068 21 C -0.182 4.182 22 C -0.023 4.023 23 N -0.208 5.208 24 C 0.133 3.867 25 N -0.102 5.102 26 C -0.061 4.061 27 C -0.296 4.296 28 C -0.127 4.127 29 N -0.101 5.101 30 C -0.134 4.134 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.199 0.801 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.184 0.816 41 H 0.195 0.805 42 H 0.200 0.800 43 H 0.174 0.826 44 H 0.210 0.790 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.432 10.103 -15.408 19.209 hybrid contribution 0.973 0.439 0.612 1.230 sum -4.460 10.542 -14.796 18.707 Atomic orbital electron populations 1.22149 0.94626 1.02620 1.02717 1.21548 0.94732 0.96013 0.84001 0.90663 1.23050 1.01946 0.96768 0.96165 1.21264 0.92631 0.91245 0.88170 0.90710 1.42671 1.37675 1.05370 1.51989 1.19042 1.14767 0.81136 1.23730 0.88973 1.24688 0.98849 0.95351 0.99588 1.69692 1.35691 1.07507 1.44364 0.86585 0.81036 0.79665 0.81374 1.20913 1.21599 1.20227 1.23883 0.94686 0.87737 1.00194 1.48469 1.49649 1.30793 1.04273 1.17677 0.80225 0.84675 0.81368 1.90770 1.40475 1.26578 1.83273 1.20176 0.95925 0.96788 0.93950 1.23135 0.96911 0.95788 1.02368 1.22598 0.97834 0.96064 0.85768 1.66721 1.07328 1.20972 1.25732 1.17487 0.91105 0.94595 0.83463 1.45767 1.22178 1.34100 1.08203 1.22947 1.00350 0.96477 0.86317 1.21661 0.99446 1.06952 1.01584 1.24176 0.99649 0.96652 0.92196 1.77533 0.99983 1.17160 1.15468 1.21578 1.01938 0.99050 0.90809 0.92153 0.91584 0.91431 0.89561 0.90580 0.80131 0.92789 0.89855 0.90541 0.81600 0.80532 0.79955 0.82611 0.79020 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.06 37.16 0.34 -1.68 16 2 C 0.14 1.83 3.49 -66.95 -0.23 1.60 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.14 -1.85 6.11 -24.89 -0.15 -2.01 16 5 C 0.18 2.92 3.69 -65.78 -0.24 2.68 16 6 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 7 N -0.74 -15.04 5.08 -51.35 -0.26 -15.30 16 8 C -0.26 -6.48 10.47 -15.06 -0.16 -6.64 16 9 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 10 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 11 N -0.93 -27.14 13.97 55.49 0.78 -26.36 16 12 Si 0.88 20.25 27.74 -169.99 -4.71 15.54 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 15 H -0.28 -5.84 6.52 56.52 0.37 -5.48 16 16 C 0.06 0.88 4.73 -2.53 -0.01 0.87 16 17 N -0.60 -8.55 3.08 -164.00 -0.51 -9.05 16 18 C 0.57 8.84 7.45 -12.19 -0.09 8.75 16 19 O -0.53 -9.48 15.72 5.35 0.08 -9.40 16 20 C -0.06 -0.80 5.75 -104.67 -0.60 -1.40 16 21 C -0.16 -1.98 8.06 -39.01 -0.31 -2.29 16 22 C 0.13 1.54 11.17 -17.61 -0.20 1.35 16 23 N -0.49 -6.38 9.83 -12.34 -0.12 -6.50 16 24 C 0.36 5.02 7.55 -154.42 -1.17 3.85 16 25 N -0.32 -4.29 3.81 -12.12 -0.05 -4.34 16 26 C 0.08 0.85 11.10 -16.83 -0.19 0.67 16 27 C -0.27 -2.34 10.80 -39.99 -0.43 -2.78 16 28 C 0.06 0.59 12.02 -17.34 -0.21 0.38 16 29 N -0.28 -3.69 11.83 30.64 0.36 -3.32 16 30 C -0.11 -1.59 9.27 -38.82 -0.36 -1.95 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.94 6.85 -51.93 -0.36 0.58 16 34 H 0.09 1.04 7.83 -51.93 -0.41 0.64 16 35 H 0.08 0.97 8.00 -51.93 -0.42 0.56 16 36 H 0.37 7.35 5.57 -40.82 -0.23 7.12 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.08 1.23 6.05 -51.92 -0.31 0.92 16 39 H 0.08 1.10 7.36 -51.93 -0.38 0.72 16 40 H 0.17 1.93 4.52 -52.49 -0.24 1.69 16 41 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.18 1.56 8.05 -52.48 -0.42 1.14 16 43 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.19 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.16 2.35 7.56 -52.49 -0.40 1.96 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -32.27 372.90 -8.63 -40.90 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.71 Total: 10.60 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -4.11 Total: 1.62 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: 0.20 Total: -64.88 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.71 Total: 15.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.27 -8.63 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989442515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.913 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds