Wall clock time and date at job start Sat Apr 11 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.99714 * 2 1 4 4 C 1.54328 * 109.78120 * 121.16557 * 2 1 3 5 5 C 1.55161 * 103.01761 * 97.49707 * 4 2 1 6 6 H 1.08994 * 111.00353 * 277.23196 * 5 4 2 7 7 N 1.46503 * 111.00207 * 153.38122 * 5 4 2 8 8 C 1.36937 * 119.99910 * 161.34950 * 7 5 4 9 9 H 1.08001 * 120.00080 * 359.97438 * 8 7 5 10 10 C 1.38818 * 119.99868 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99705 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00048 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46962 * 90.00293 * 12 10 8 14 14 H 1.48496 * 109.47275 * 210.00410 * 12 10 8 15 15 H 1.48497 * 109.47390 * 330.00914 * 12 10 8 16 16 C 1.54902 * 101.58130 * 35.31232 * 5 4 2 17 17 N 1.47025 * 109.88327 * 238.90772 * 2 1 3 18 18 C 1.34774 * 125.64643 * 59.56216 * 17 2 1 19 19 O 1.21520 * 120.00486 * 3.38271 * 18 17 2 20 20 C 1.48162 * 119.99951 * 183.39439 * 18 17 2 21 21 C 1.39942 * 120.88843 * 334.72847 * 20 18 17 22 22 C 1.38062 * 119.13359 * 179.97438 * 21 20 18 23 23 N 1.31837 * 120.98530 * 359.97438 * 22 21 20 24 24 C 1.32244 * 121.96922 * 0.02562 * 23 22 21 25 25 N 1.39830 * 119.62170 * 179.97438 * 24 23 22 26 26 C 1.35845 * 126.10570 * 359.71088 * 25 24 23 27 27 C 1.35279 * 107.61653 * 179.87461 * 26 25 24 28 28 C 1.39955 * 107.96705 * 0.38620 * 27 26 25 29 29 N 1.30826 * 108.36903 * 359.75697 * 28 27 26 30 30 C 1.38909 * 120.75123 * 359.97438 * 24 23 22 31 31 H 1.08999 * 109.47119 * 179.63645 * 1 2 3 32 32 H 1.09000 * 109.47351 * 299.64156 * 1 2 3 33 33 H 1.08999 * 109.47259 * 59.64032 * 1 2 3 34 34 H 1.08999 * 110.85084 * 339.03165 * 4 2 1 35 35 H 1.09000 * 110.51765 * 215.80562 * 4 2 1 36 36 H 0.97004 * 119.99990 * 341.35458 * 7 5 4 37 37 H 0.96995 * 120.00168 * 179.97438 * 11 10 8 38 38 H 1.09010 * 110.36379 * 204.15113 * 16 5 4 39 39 H 1.08996 * 110.46316 * 81.87544 * 16 5 4 40 40 H 1.07993 * 120.43524 * 359.95201 * 21 20 18 41 41 H 1.07999 * 119.50672 * 179.71934 * 22 21 20 42 42 H 1.08003 * 126.18748 * 359.97438 * 26 25 24 43 43 H 1.07995 * 126.02026 * 180.11077 * 27 26 25 44 44 H 1.08004 * 125.81509 * 179.77788 * 28 27 26 45 45 H 1.07996 * 120.53062 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0523 -0.7515 1.2426 5 6 2.3562 -2.1697 0.6913 6 1 1.4522 -2.7778 0.6577 7 7 3.4001 -2.8275 1.4811 8 6 3.5513 -4.1871 1.4188 9 1 2.9008 -4.7745 0.7877 10 6 4.5401 -4.8105 2.1675 11 7 4.6858 -6.1172 2.1073 12 14 5.6648 -3.7947 3.2595 13 1 5.0642 -3.6738 4.6123 14 1 6.9880 -4.4608 3.3631 15 1 5.8363 -2.4420 2.6715 16 6 2.8614 -1.8464 -0.7369 17 7 2.0300 -0.7140 -1.1840 18 6 1.7754 -0.3843 -2.4657 19 8 1.1289 0.6128 -2.7198 20 6 2.2835 -1.2377 -3.5651 21 6 3.4135 -2.0434 -3.3857 22 6 3.8553 -2.8249 -4.4346 23 7 3.2289 -2.8210 -5.5946 24 6 2.1577 -2.0759 -5.8095 25 7 1.5319 -2.1094 -7.0595 26 6 1.9203 -2.8507 -8.1295 27 6 1.0526 -2.6012 -9.1370 28 6 0.1104 -1.6748 -8.6759 29 7 0.3959 -1.3799 -7.4336 30 6 1.6471 -1.2605 -4.8075 31 1 -0.3633 -1.0276 -0.0065 32 1 -0.3634 0.5082 0.8932 33 1 -0.3634 0.5194 -0.8867 34 1 1.2886 -0.7952 2.0191 35 1 2.9606 -0.2815 1.6196 36 1 3.9841 -2.3000 2.0482 37 1 5.3769 -6.5528 2.6301 38 1 2.7178 -2.7048 -1.3934 39 1 3.9126 -1.5593 -0.7134 40 1 3.9335 -2.0535 -2.4392 41 1 4.7295 -3.4455 -4.3041 42 1 2.7674 -3.5195 -8.1683 43 1 1.0842 -3.0366 -10.1248 44 1 -0.7124 -1.2721 -9.2480 45 1 0.7723 -0.6531 -4.9870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989442515.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:40 Heat of formation + Delta-G solvation = 107.076263 kcal Electronic energy + Delta-G solvation = -29052.911466 eV Core-core repulsion = 25072.935048 eV Total energy + Delta-G solvation = -3979.976418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.67882 -41.84456 -40.60505 -38.92204 -36.12860 -35.12913 -34.01798 -33.49552 -32.61172 -31.35542 -30.54900 -30.40080 -27.08255 -26.38730 -25.37088 -25.14867 -23.50678 -22.27295 -22.04283 -21.60967 -20.61200 -19.69037 -19.31393 -18.30009 -17.38584 -17.22072 -16.94854 -16.80013 -16.61871 -16.25624 -15.86247 -15.56192 -15.33931 -15.24851 -14.75503 -14.65463 -14.60688 -14.48338 -14.30176 -14.06982 -13.72565 -13.46767 -13.37284 -13.12446 -13.07788 -12.84561 -12.34848 -12.03625 -11.97641 -11.88072 -11.79833 -11.63032 -11.50037 -11.46949 -11.18365 -11.05253 -10.78540 -10.28442 -9.85943 -9.40836 -9.32647 -7.98262 -5.34552 -0.66565 -0.39663 0.91520 0.98685 1.44583 1.47488 1.53790 1.56484 1.72733 1.80534 2.52875 2.56495 2.93759 3.21075 3.30612 3.37121 3.52275 3.65193 3.72834 3.76005 3.85894 3.98771 4.02861 4.07077 4.28237 4.32982 4.41022 4.42696 4.49907 4.58738 4.64517 4.68533 4.70342 4.78077 4.84151 4.97575 5.01383 5.08288 5.18206 5.19652 5.28017 5.40026 5.55927 5.81059 5.94539 6.23525 6.25652 6.27547 6.70266 6.83939 7.10314 7.82878 8.02672 9.22326 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.002897 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.599012 B = 9663.377332 C =11253.995273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.085 0.915 4 C -0.126 4.126 5 C 0.170 3.830 6 H 0.062 0.938 7 N -0.735 5.735 8 C -0.231 4.231 9 H 0.061 0.939 10 C -0.057 4.057 11 N -0.981 5.981 12 Si 0.950 3.050 13 H -0.283 1.283 14 H -0.302 1.302 15 H -0.243 1.243 16 C 0.070 3.930 17 N -0.595 5.595 18 C 0.572 3.428 19 O -0.562 6.562 20 C -0.066 4.066 21 C -0.160 4.160 22 C 0.141 3.859 23 N -0.498 5.498 24 C 0.355 3.645 25 N -0.344 5.344 26 C 0.062 3.938 27 C -0.255 4.255 28 C 0.068 3.932 29 N -0.329 5.329 30 C -0.127 4.127 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.371 0.629 37 H 0.257 0.743 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.175 0.825 41 H 0.210 0.790 42 H 0.198 0.802 43 H 0.191 0.809 44 H 0.229 0.771 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 11.039 -16.138 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.103 0.897 4 C -0.165 4.165 5 C 0.060 3.940 6 H 0.080 0.920 7 N -0.378 5.378 8 C -0.362 4.362 9 H 0.079 0.921 10 C -0.249 4.249 11 N -0.631 5.631 12 Si 0.777 3.223 13 H -0.209 1.209 14 H -0.230 1.230 15 H -0.167 1.167 16 C -0.055 4.055 17 N -0.327 5.327 18 C 0.361 3.639 19 O -0.442 6.442 20 C -0.078 4.078 21 C -0.180 4.180 22 C -0.016 4.016 23 N -0.212 5.212 24 C 0.128 3.872 25 N -0.123 5.123 26 C -0.078 4.078 27 C -0.283 4.283 28 C -0.120 4.120 29 N -0.148 5.148 30 C -0.150 4.150 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.206 0.794 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.192 0.808 41 H 0.227 0.773 42 H 0.215 0.785 43 H 0.208 0.792 44 H 0.245 0.755 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.886 11.522 -15.959 20.281 hybrid contribution 0.652 -0.006 0.610 0.893 sum -4.234 11.516 -15.349 19.650 Atomic orbital electron populations 1.22108 0.94146 1.02232 1.03083 1.21704 0.95157 0.96361 0.83349 0.89721 1.22992 1.03094 0.94035 0.96338 1.21383 0.91064 0.92711 0.88889 0.92016 1.42560 1.38762 1.03637 1.52822 1.18965 1.12824 0.83052 1.21373 0.92127 1.25449 1.01171 0.96307 1.01946 1.69874 1.37047 1.09738 1.46397 0.85497 0.78011 0.79445 0.79302 1.20935 1.22965 1.16716 1.23663 0.95128 0.87870 0.98822 1.48466 1.49321 1.30529 1.04389 1.17866 0.79790 0.84436 0.81849 1.90749 1.41849 1.27889 1.83686 1.20144 0.96780 0.97345 0.93499 1.23204 0.96294 0.95538 1.02990 1.23177 0.98089 0.95414 0.84937 1.66851 1.07150 1.20893 1.26282 1.17644 0.91252 0.94324 0.83934 1.45901 1.22748 1.35194 1.08459 1.23443 1.01397 0.96732 0.86192 1.22115 0.98007 1.05782 1.02398 1.24916 1.00099 0.95765 0.91256 1.77520 1.00950 1.18841 1.17484 1.21463 1.02086 0.99943 0.91512 0.92854 0.89059 0.93244 0.87983 0.89207 0.79442 0.93398 0.90227 0.89472 0.80820 0.77319 0.78535 0.79225 0.75517 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 9.06 71.98 0.65 -3.04 16 2 C 0.14 3.31 3.49 45.34 0.16 3.47 16 3 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.13 -2.95 6.11 31.79 0.19 -2.76 16 5 C 0.17 5.27 3.69 46.38 0.17 5.44 16 6 H 0.06 2.10 8.13 -2.39 -0.02 2.08 16 7 N -0.74 -28.65 5.08 -316.37 -1.61 -30.26 16 8 C -0.23 -11.61 10.47 84.03 0.88 -10.73 16 9 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 10 C -0.06 -3.04 5.50 84.86 0.47 -2.58 16 11 N -0.98 -58.75 13.97 21.65 0.30 -58.45 16 12 Si 0.95 41.06 27.74 68.60 1.90 42.96 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 15 H -0.24 -9.05 6.52 99.48 0.65 -8.40 16 16 C 0.07 1.95 4.73 86.85 0.41 2.36 16 17 N -0.60 -16.39 3.08 -791.07 -2.44 -18.83 16 18 C 0.57 17.74 7.45 86.88 0.65 18.39 16 19 O -0.56 -20.38 15.72 -3.78 -0.06 -20.44 16 20 C -0.07 -1.90 5.75 -19.90 -0.11 -2.01 16 21 C -0.16 -3.80 8.06 22.64 0.18 -3.62 16 22 C 0.14 3.06 11.17 84.65 0.95 4.01 16 23 N -0.50 -12.59 9.83 -192.95 -1.90 -14.49 16 24 C 0.36 10.07 7.55 132.77 1.00 11.07 16 25 N -0.34 -9.17 3.81 -192.27 -0.73 -9.90 16 26 C 0.06 1.26 11.10 83.39 0.93 2.18 16 27 C -0.26 -3.91 10.80 22.00 0.24 -3.67 16 28 C 0.07 1.19 12.02 85.26 1.02 2.21 16 29 N -0.33 -8.65 11.83 -56.97 -0.67 -9.32 16 30 C -0.13 -3.80 9.27 22.76 0.21 -3.59 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 1.35 6.85 -2.39 -0.02 1.34 16 34 H 0.10 2.11 7.83 -2.39 -0.02 2.10 16 35 H 0.09 1.92 8.00 -2.39 -0.02 1.90 16 36 H 0.37 13.71 5.57 -92.71 -0.52 13.19 16 37 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.08 2.30 6.05 -2.38 -0.01 2.29 16 39 H 0.09 2.30 7.36 -2.39 -0.02 2.28 16 40 H 0.17 3.79 4.52 -2.91 -0.01 3.78 16 41 H 0.21 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.20 3.13 8.05 -2.91 -0.02 3.11 16 43 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.23 1.98 8.06 -2.91 -0.02 1.95 16 45 H 0.14 4.58 7.56 -2.91 -0.02 4.56 16 Total: -1.00 -72.34 372.90 3.25 -69.09 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.46 Total: 32.52 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 7.99 Total: 17.12 kcal Atomic # 7 Polarization: -134.20 SS G_CDS: -7.04 Total: -141.25 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.06 Total: -20.44 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.90 Total: 42.96 kcal Total: -72.34 3.25 -69.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989442515.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.165 kcal (2) G-P(sol) polarization free energy of solvation -72.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds