Wall clock time and date at job start Sat Apr 11 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.99781 * 2 1 4 4 C 1.54336 * 109.99326 * 238.95941 * 2 1 3 5 5 C 1.55155 * 103.01773 * 218.66346 * 4 2 1 6 6 H 1.09009 * 111.03080 * 153.39695 * 5 4 2 7 7 N 1.46490 * 111.00922 * 277.23146 * 5 4 2 8 8 C 1.36937 * 120.00245 * 198.65213 * 7 5 4 9 9 H 1.07995 * 119.99919 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99700 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00606 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99783 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46804 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47065 * 119.99970 * 12 10 8 15 15 H 1.48496 * 109.47227 * 239.99997 * 12 10 8 16 16 C 1.54906 * 101.58185 * 35.31153 * 5 4 2 17 17 N 1.47020 * 109.87996 * 121.09402 * 2 1 3 18 18 C 1.34778 * 125.64732 * 298.39334 * 17 2 1 19 19 O 1.21515 * 120.00296 * 3.22955 * 18 17 2 20 20 C 1.48159 * 119.99865 * 183.22504 * 18 17 2 21 21 C 1.39936 * 120.89567 * 334.94390 * 20 18 17 22 22 C 1.38054 * 119.14192 * 179.97438 * 21 20 18 23 23 N 1.31850 * 120.97977 * 359.97438 * 22 21 20 24 24 C 1.32231 * 121.97001 * 0.02562 * 23 22 21 25 25 N 1.39835 * 119.62523 * 180.02562 * 24 23 22 26 26 C 1.35842 * 126.09875 * 0.02562 * 25 24 23 27 27 C 1.35286 * 107.61051 * 180.02562 * 26 25 24 28 28 C 1.39945 * 107.97242 * 359.97438 * 27 26 25 29 29 N 1.30822 * 108.36961 * 0.02562 * 28 27 26 30 30 C 1.38918 * 120.75310 * 0.27397 * 24 23 22 31 31 H 1.08996 * 109.47344 * 300.36263 * 1 2 3 32 32 H 1.08999 * 109.47055 * 60.35921 * 1 2 3 33 33 H 1.09005 * 109.47054 * 180.35590 * 1 2 3 34 34 H 1.08996 * 110.84686 * 100.20117 * 4 2 1 35 35 H 1.09001 * 110.66471 * 337.04667 * 4 2 1 36 36 H 0.97005 * 119.99889 * 18.65137 * 7 5 4 37 37 H 0.96996 * 120.00462 * 179.97438 * 11 10 8 38 38 H 1.09002 * 110.36511 * 204.14434 * 16 5 4 39 39 H 1.09001 * 110.37389 * 81.82474 * 16 5 4 40 40 H 1.07999 * 120.43053 * 359.97120 * 21 20 18 41 41 H 1.08001 * 119.51463 * 179.97438 * 22 21 20 42 42 H 1.08002 * 126.19707 * 0.02562 * 26 25 24 43 43 H 1.08004 * 126.01210 * 180.02562 * 27 26 25 44 44 H 1.07998 * 125.81865 * 180.02562 * 28 27 26 45 45 H 1.08003 * 120.52918 * 179.73418 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2427 5 6 3.2864 -1.5183 -0.6913 6 1 3.4814 -2.4156 -1.2788 7 7 4.4699 -0.6562 -0.6462 8 6 5.7188 -1.2115 -0.5630 9 1 5.8313 -2.2851 -0.5311 10 6 6.8402 -0.3945 -0.5197 11 7 6.7032 0.9139 -0.5592 12 14 8.5440 -1.1521 -0.4070 13 1 8.4267 -2.6322 -0.3793 14 1 9.3473 -0.7416 -1.5866 15 1 9.2124 -0.6847 0.8339 16 6 2.8099 -1.8824 0.7370 17 7 2.0299 -0.7140 1.1839 18 6 1.8073 -0.3619 2.4657 19 8 1.0937 0.5883 2.7196 20 6 2.4325 -1.1335 3.5652 21 6 2.8035 -2.4706 3.3841 22 6 3.3839 -3.1552 4.4331 23 7 3.5915 -2.5675 5.5950 24 6 3.2572 -1.3066 5.8114 25 7 3.5003 -0.7321 7.0629 26 6 4.0677 -1.3507 8.1310 27 6 4.1229 -0.4534 9.1420 28 6 3.5750 0.7494 8.6821 29 7 3.2022 0.5841 7.4391 30 6 2.6626 -0.5476 4.8113 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5082 -0.8932 33 1 -0.3633 -1.0277 0.0064 34 1 2.3598 -0.0451 -2.0191 35 1 1.3067 -1.4406 -1.6224 36 1 4.3689 0.3082 -0.6753 37 1 7.4867 1.4848 -0.5286 38 1 3.6655 -2.0411 1.3934 39 1 2.1801 -2.7717 0.7117 40 1 2.6380 -2.9606 2.4361 41 1 3.6723 -4.1875 4.3001 42 1 4.4122 -2.3737 8.1667 43 1 4.5206 -0.6335 10.1298 44 1 3.4767 1.6592 9.2557 45 1 2.3871 0.4807 4.9934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989442517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:48 Heat of formation + Delta-G solvation = 123.238574 kcal Electronic energy + Delta-G solvation = -29487.497019 eV Core-core repulsion = 25508.221451 eV Total energy + Delta-G solvation = -3979.275568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68558 -40.61299 -39.38413 -37.44052 -34.13925 -33.97527 -32.87911 -31.50707 -31.32168 -30.39009 -29.47759 -28.55402 -25.90094 -25.03753 -24.09284 -23.80814 -22.44327 -21.19829 -20.92685 -20.19501 -19.35376 -18.16526 -17.35431 -17.06627 -16.27837 -16.04299 -15.77615 -15.59779 -15.20555 -14.72317 -14.59455 -14.19996 -14.12335 -13.74408 -13.64720 -13.53953 -13.44316 -13.06253 -12.93145 -12.90435 -12.31681 -12.12621 -11.97290 -11.77102 -11.25279 -11.04831 -10.97255 -10.82699 -10.77587 -10.51093 -10.40043 -10.17232 -10.07183 -9.98174 -9.80905 -9.61469 -9.33363 -9.10578 -8.44511 -8.35995 -7.12161 -5.89717 -3.20856 0.45664 0.76661 1.88827 1.96859 2.61574 2.90424 3.11021 3.35096 3.40013 3.43532 3.73925 4.10765 4.30503 4.45553 4.46894 4.72835 4.77508 4.85870 4.92755 5.03083 5.10080 5.22492 5.29429 5.39448 5.45602 5.50257 5.56070 5.57800 5.63787 5.68756 5.75354 5.77622 5.86384 5.93477 6.05897 6.11434 6.21061 6.31149 6.34100 6.36782 6.47111 6.59252 6.66919 6.91536 7.21946 7.57030 7.71024 7.71765 8.26886 8.27274 9.39313 9.93618 10.27590 11.32111 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008852 B = 0.003835 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.266543 B = 7299.925859 C = 9207.400386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.169 3.831 6 H 0.074 0.926 7 N -0.712 5.712 8 C -0.251 4.251 9 H 0.074 0.926 10 C -0.006 4.006 11 N -0.926 5.926 12 Si 0.905 3.095 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.291 1.291 16 C 0.054 3.946 17 N -0.585 5.585 18 C 0.573 3.427 19 O -0.536 6.536 20 C -0.049 4.049 21 C -0.162 4.162 22 C 0.130 3.870 23 N -0.496 5.496 24 C 0.362 3.638 25 N -0.323 5.323 26 C 0.080 3.920 27 C -0.269 4.269 28 C 0.061 3.939 29 N -0.280 5.280 30 C -0.108 4.108 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.162 0.838 41 H 0.174 0.826 42 H 0.182 0.818 43 H 0.156 0.844 44 H 0.193 0.807 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.126 -8.033 10.974 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.095 0.905 4 C -0.176 4.176 5 C 0.056 3.944 6 H 0.091 0.909 7 N -0.351 5.351 8 C -0.381 4.381 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.573 5.573 12 Si 0.736 3.264 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.218 1.218 16 C -0.072 4.072 17 N -0.317 5.317 18 C 0.361 3.639 19 O -0.414 6.414 20 C -0.060 4.060 21 C -0.182 4.182 22 C -0.027 4.027 23 N -0.210 5.210 24 C 0.135 3.865 25 N -0.101 5.101 26 C -0.062 4.062 27 C -0.297 4.297 28 C -0.128 4.128 29 N -0.099 5.099 30 C -0.131 4.131 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.180 0.820 41 H 0.191 0.809 42 H 0.200 0.800 43 H 0.173 0.827 44 H 0.210 0.790 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.496 -7.548 10.726 16.798 hybrid contribution 1.187 0.022 0.307 1.226 sum -9.309 -7.526 11.033 16.279 Atomic orbital electron populations 1.22148 0.95095 1.01894 1.02730 1.21551 0.93747 0.96840 0.84256 0.90492 1.23053 0.98150 1.00085 0.96325 1.21354 0.87066 0.94615 0.91373 0.90866 1.42351 1.00219 1.05272 1.87295 1.19234 0.83300 0.91809 1.43802 0.90853 1.24770 0.97992 0.95307 1.02237 1.69665 1.28993 1.02154 1.56470 0.86162 0.84690 0.78232 0.77321 1.20381 1.21701 1.21847 1.23851 0.94737 0.86791 1.01774 1.48243 1.50926 1.28374 1.04156 1.17606 0.81188 0.83721 0.81429 1.90756 1.38637 1.28750 1.83275 1.20186 0.97595 0.94416 0.93826 1.22999 0.98808 0.94498 1.01926 1.22484 0.94320 0.99910 0.86020 1.66669 1.19615 1.08967 1.25724 1.17458 0.96376 0.89260 0.83443 1.45762 1.46893 1.09290 1.08185 1.22919 0.96818 1.00116 0.86361 1.21645 1.12884 0.93687 1.01484 1.24168 0.96836 0.99573 0.92193 1.77561 1.23578 0.93438 1.15304 1.21609 0.98344 1.02347 0.90821 0.91383 0.91804 0.92771 0.89574 0.90527 0.77977 0.93340 0.89177 0.92005 0.82032 0.80908 0.80043 0.82667 0.79036 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.11 37.16 0.34 -1.79 16 2 C 0.14 2.14 3.47 -66.95 -0.23 1.91 16 3 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 4 C -0.14 -1.94 6.05 -24.89 -0.15 -2.09 16 5 C 0.17 2.85 3.69 -65.79 -0.24 2.60 16 6 H 0.07 1.17 8.13 -51.92 -0.42 0.75 16 7 N -0.71 -16.22 5.27 -51.36 -0.27 -16.49 16 8 C -0.25 -6.41 9.98 -15.06 -0.15 -6.56 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 11 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 12 Si 0.91 21.58 29.55 -169.99 -5.02 16.55 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 C 0.05 0.82 4.72 -2.53 -0.01 0.80 16 17 N -0.59 -9.61 3.06 -164.00 -0.50 -10.11 16 18 C 0.57 10.27 7.52 -12.19 -0.09 10.18 16 19 O -0.54 -10.92 15.62 5.35 0.08 -10.83 16 20 C -0.05 -0.79 5.75 -104.68 -0.60 -1.39 16 21 C -0.16 -2.10 8.06 -39.01 -0.31 -2.42 16 22 C 0.13 1.55 11.17 -17.61 -0.20 1.35 16 23 N -0.50 -6.96 9.83 -12.34 -0.12 -7.08 16 24 C 0.36 5.67 7.55 -154.43 -1.17 4.50 16 25 N -0.32 -4.83 3.81 -12.12 -0.05 -4.88 16 26 C 0.08 0.95 11.10 -16.83 -0.19 0.76 16 27 C -0.27 -2.71 10.80 -39.99 -0.43 -3.14 16 28 C 0.06 0.68 12.02 -17.34 -0.21 0.47 16 29 N -0.28 -4.18 11.83 30.64 0.36 -3.82 16 30 C -0.11 -1.81 9.27 -38.82 -0.36 -2.17 16 31 H 0.07 1.04 6.78 -51.93 -0.35 0.69 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 0.87 7.85 -51.93 -0.41 0.47 16 36 H 0.39 9.74 7.82 -40.82 -0.32 9.42 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.09 1.50 6.06 -51.93 -0.31 1.18 16 39 H 0.06 0.72 7.37 -51.93 -0.38 0.33 16 40 H 0.16 1.78 4.51 -52.49 -0.24 1.54 16 41 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.18 1.75 8.05 -52.49 -0.42 1.32 16 43 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.19 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.16 2.78 7.55 -52.48 -0.40 2.39 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -33.59 376.11 -8.99 -42.58 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.76 Total: 12.12 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -4.10 Total: 2.76 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: 0.15 Total: -68.85 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.59 -8.99 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989442517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.820 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds